Guide to the Human Genome
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Search of human proteins with 169165184

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169165184 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
         (210 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169165598 PREDICTED: hypothetical protein [Homo sapiens]           441   e-124
gi|239742122 PREDICTED: hypothetical protein isoform 2 [Homo sap...   441   e-124
gi|169165184 PREDICTED: hypothetical protein isoform 1 [Homo sap...   441   e-124
gi|239756579 PREDICTED: hypothetical protein [Homo sapiens]           439   e-123
gi|239751071 PREDICTED: hypothetical protein XP_002347706 [Homo ...   439   e-123
gi|169165985 PREDICTED: hypothetical protein [Homo sapiens]           439   e-123
gi|239745558 PREDICTED: hypothetical protein XP_002344162 [Homo ...   439   e-123
gi|19924099 synapsin I isoform Ia [Homo sapiens]                       42   4e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens]                       42   4e-04
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]     42   5e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      40   0.001
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      40   0.001
gi|5730045 solute carrier family 16, member 2 [Homo sapiens]           40   0.002
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]       39   0.002
gi|58218966 hypothetical protein LOC339201 [Homo sapiens]              39   0.003
gi|19924103 synapsin II isoform IIa [Homo sapiens]                     39   0.004
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]     37   0.009
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]     37   0.009
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    37   0.016
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    37   0.016
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]            37   0.016
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre...    37   0.016
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                37   0.016
gi|156616290 collagen type VI alpha 6 [Homo sapiens]                   36   0.021
gi|169171580 PREDICTED: hypothetical protein [Homo sapiens]            36   0.021
gi|113419324 PREDICTED: hypothetical protein [Homo sapiens]            36   0.021
gi|239747677 PREDICTED: hypothetical protein [Homo sapiens]            36   0.021
gi|113418864 PREDICTED: hypothetical protein [Homo sapiens]            36   0.021
gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo ...    36   0.021
gi|239509076 PREDICTED: hypothetical protein [Homo sapiens]            36   0.021

>gi|169165598 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 210

 Score =  441 bits (1133), Expect = e-124
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
           MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA
Sbjct: 1   MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60

Query: 61  HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
           HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY
Sbjct: 61  HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120

Query: 121 PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
           PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC
Sbjct: 121 PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180

Query: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
           RMMSSVATLRKASSTLLESLADVSMAHRMS
Sbjct: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210


>gi|239742122 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 210

 Score =  441 bits (1133), Expect = e-124
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
           MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA
Sbjct: 1   MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60

Query: 61  HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
           HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY
Sbjct: 61  HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120

Query: 121 PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
           PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC
Sbjct: 121 PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180

Query: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
           RMMSSVATLRKASSTLLESLADVSMAHRMS
Sbjct: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210


>gi|169165184 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 210

 Score =  441 bits (1133), Expect = e-124
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
           MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA
Sbjct: 1   MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60

Query: 61  HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
           HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY
Sbjct: 61  HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120

Query: 121 PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
           PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC
Sbjct: 121 PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180

Query: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
           RMMSSVATLRKASSTLLESLADVSMAHRMS
Sbjct: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210


>gi|239756579 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 210

 Score =  439 bits (1128), Expect = e-123
 Identities = 209/210 (99%), Positives = 210/210 (100%)

Query: 1   MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
           MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA
Sbjct: 1   MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60

Query: 61  HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
           HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY
Sbjct: 61  HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120

Query: 121 PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
           PGGLALEGWAWQAGESKEVG+PQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC
Sbjct: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180

Query: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
           RMMSSVATLRKASSTLLESLADVSMAHRMS
Sbjct: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210


>gi|239751071 PREDICTED: hypothetical protein XP_002347706 [Homo
           sapiens]
          Length = 210

 Score =  439 bits (1128), Expect = e-123
 Identities = 209/210 (99%), Positives = 210/210 (100%)

Query: 1   MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
           MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA
Sbjct: 1   MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60

Query: 61  HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
           HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY
Sbjct: 61  HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120

Query: 121 PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
           PGGLALEGWAWQAGESKEVG+PQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC
Sbjct: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180

Query: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
           RMMSSVATLRKASSTLLESLADVSMAHRMS
Sbjct: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210


>gi|169165985 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 210

 Score =  439 bits (1128), Expect = e-123
 Identities = 209/210 (99%), Positives = 210/210 (100%)

Query: 1   MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
           MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA
Sbjct: 1   MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60

Query: 61  HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
           HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY
Sbjct: 61  HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120

Query: 121 PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
           PGGLALEGWAWQAGESKEVG+PQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC
Sbjct: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180

Query: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
           RMMSSVATLRKASSTLLESLADVSMAHRMS
Sbjct: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210


>gi|239745558 PREDICTED: hypothetical protein XP_002344162 [Homo
           sapiens]
          Length = 210

 Score =  439 bits (1128), Expect = e-123
 Identities = 209/210 (99%), Positives = 210/210 (100%)

Query: 1   MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60
           MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA
Sbjct: 1   MALALLLCAEPQDDREEPRALDTSLESSNLLPQVKQTHERKRSEPAGMGQGGLLAPPTVA 60

Query: 61  HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120
           HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY
Sbjct: 61  HTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY 120

Query: 121 PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180
           PGGLALEGWAWQAGESKEVG+PQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC
Sbjct: 121 PGGLALEGWAWQAGESKEVGSPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPC 180

Query: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210
           RMMSSVATLRKASSTLLESLADVSMAHRMS
Sbjct: 181 RMMSSVATLRKASSTLLESLADVSMAHRMS 210


>gi|19924099 synapsin I isoform Ia [Homo sapiens]
          Length = 705

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 46/150 (30%), Positives = 53/150 (35%), Gaps = 25/150 (16%)

Query: 32  PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGG----PAAGWQGGPPG 87
           P   Q H      PAG      L  PT A             G G    P AG  G PP 
Sbjct: 486 PPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPA 545

Query: 88  Y--PASPS-SRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEG-------------WAW 131
              PASPS  R+A  PQ   +   S  +P   S   PGG   +G              A 
Sbjct: 546 ARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQAS 605

Query: 132 QAGESKEVG-----NPQSAGPAPGQHPQPQ 156
           QAG     G      P+ +GP P   P+PQ
Sbjct: 606 QAGPVPRTGPPTTQQPRPSGPGPAGRPKPQ 635


>gi|19924097 synapsin I isoform Ib [Homo sapiens]
          Length = 669

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 46/150 (30%), Positives = 53/150 (35%), Gaps = 25/150 (16%)

Query: 32  PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGG----PAAGWQGGPPG 87
           P   Q H      PAG      L  PT A             G G    P AG  G PP 
Sbjct: 486 PPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPA 545

Query: 88  Y--PASPS-SRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEG-------------WAW 131
              PASPS  R+A  PQ   +   S  +P   S   PGG   +G              A 
Sbjct: 546 ARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQAS 605

Query: 132 QAGESKEVG-----NPQSAGPAPGQHPQPQ 156
           QAG     G      P+ +GP P   P+PQ
Sbjct: 606 QAGPVPRTGPPTTQQPRPSGPGPAGRPKPQ 635


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
          Length = 416

 Score = 41.6 bits (96), Expect = 5e-04
 Identities = 39/128 (30%), Positives = 47/128 (36%), Gaps = 11/128 (8%)

Query: 32  PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPAS 91
           PQ     +  RS P G  QG    PP   +     P    +  G P  G  G  P  P  
Sbjct: 226 PQGDNKSQSARSPP-GKPQG---PPPQGGNQPQGPPPPPGKPQGPPPQG--GNKPQGPPP 279

Query: 92  PSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPAPGQ 151
           P   +   PQ G + +SSR+ PG      P G   +G     G     G PQ   P  G 
Sbjct: 280 PGKPQGPPPQGGSKSRSSRSPPG-----KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 334

Query: 152 HPQPQPSP 159
            PQ  P P
Sbjct: 335 KPQGPPPP 342



 Score = 40.4 bits (93), Expect = 0.001
 Identities = 36/128 (28%), Positives = 44/128 (34%), Gaps = 10/128 (7%)

Query: 32  PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPAS 91
           P       R    P G  QG    PP   +     P    +  G P  G  G  P  P  
Sbjct: 163 PPQGDNKSRSSRSPPGKPQG---PPPQGGNQPQGPPPPPGKPQGPPPQG--GNKPQGPPP 217

Query: 92  PSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPAPGQ 151
           P   +   PQ  ++ QS+R+ PG      P G   +G     G     G PQ   P  G 
Sbjct: 218 PGKPQGPPPQGDNKSQSARSPPG-----KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 272

Query: 152 HPQPQPSP 159
            PQ  P P
Sbjct: 273 KPQGPPPP 280



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 36/128 (28%), Positives = 45/128 (35%), Gaps = 10/128 (7%)

Query: 32  PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPAS 91
           P  +    R    P G  QG    PP   +     P    +  G P  G  G  P  P  
Sbjct: 101 PPPQGDKSRSPRSPPGKPQG---PPPQGGNQPQGPPPPPGKPQGPPPQG--GNKPQGPPP 155

Query: 92  PSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPAPGQ 151
           P   +   PQ  ++ +SSR+ PG      P G   +G     G     G PQ   P  G 
Sbjct: 156 PGKPQGPPPQGDNKSRSSRSPPG-----KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 210

Query: 152 HPQPQPSP 159
            PQ  P P
Sbjct: 211 KPQGPPPP 218



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 35/120 (29%), Positives = 43/120 (35%), Gaps = 9/120 (7%)

Query: 40  RKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASI 99
           R    P G  QG    PP   +     P    +  G P  G  G  P  P  P   +   
Sbjct: 295 RSSRSPPGKPQG---PPPQGGNQPQGPPPPPGKPQGPPPQG--GNKPQGPPPPGKPQGPP 349

Query: 100 PQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSP 159
           PQ G + +S+R+ PG    +  G    EG   Q       GNPQ     P   PQ  P P
Sbjct: 350 PQGGSKSRSARSPPG----KPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRP 405



 Score = 34.7 bits (78), Expect = 0.060
 Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 85  PPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQS 144
           PPG P  P       P  G + +S R+ PG      P G   +G     G     G PQ 
Sbjct: 94  PPGKPQGP-------PPQGDKSRSPRSPPG-----KPQGPPPQGGNQPQGPPPPPGKPQG 141

Query: 145 AGPAPGQHPQPQPSP 159
             P  G  PQ  P P
Sbjct: 142 PPPQGGNKPQGPPPP 156



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 15/77 (19%)

Query: 83  GGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNP 142
           G P G P          PQ G++ Q   + PG      P G   +G     G     G P
Sbjct: 34  GNPQGAP----------PQGGNKPQGPPSPPG-----KPQGPPPQGGNQPQGPPPPPGKP 78

Query: 143 QSAGPAPGQHPQPQPSP 159
           Q   P  G  PQ  P P
Sbjct: 79  QGPPPQGGNKPQGPPPP 95


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 34/120 (28%), Positives = 46/120 (38%), Gaps = 8/120 (6%)

Query: 42  RSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGP-PGYPASPSSRRASIP 100
           R EP   G  G   PP        +P  + E G   A G  G P P  PA P     ++ 
Sbjct: 802 RGEPGPPGPAGFAGPPGADG----QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVG 857

Query: 101 QPGHR-MQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSP 159
            PG +  + S   PG     +PG     G    +G +   G P  AG   G+ P+ +  P
Sbjct: 858 APGAKGARGSAGPPGATG--FPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGP 915



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 45/144 (31%), Positives = 54/144 (37%), Gaps = 22/144 (15%)

Query: 29  NLLPQVKQTHERKR----SEPAGMGQGG---LLAPPTVAHTGGFR--PVLECEDGGGPAA 79
           N  PQ+   ++ K     S P  MG  G   L  PP      GF+  P    E G     
Sbjct: 158 NFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPM 217

Query: 80  GWQG--GPPGY---------PASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGL-ALE 127
           G +G  GPPG          P  P  R    PQ    +  +   PG    R   GL   +
Sbjct: 218 GPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAK 277

Query: 128 GWAWQAGESKEVGNPQSAGPAPGQ 151
           G A  AG   E G+P   G APGQ
Sbjct: 278 GDAGPAGPKGEPGSPGENG-APGQ 300



 Score = 34.7 bits (78), Expect = 0.060
 Identities = 40/132 (30%), Positives = 49/132 (37%), Gaps = 16/132 (12%)

Query: 42  RSEPAGMGQGGLLAPPTVAHTGGFRPVLECE----DGGGPAAGWQGGPPGYPASPSSR-R 96
           R E    G+ G+  PP  A   G       +    D G P A    G PG    P  R  
Sbjct: 676 RGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGA 735

Query: 97  ASIPQP-GHR----MQSSRASPGCCSCR-YPGGLALEGWAWQAGESKEVGNPQSAGP--- 147
           A +P P G R     + +  SPG    R   G +   G A   G+  E G    AGP   
Sbjct: 736 AGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGA 795

Query: 148 --APGQHPQPQP 157
             APG   +P P
Sbjct: 796 RGAPGDRGEPGP 807



 Score = 32.3 bits (72), Expect = 0.30
 Identities = 34/111 (30%), Positives = 41/111 (36%), Gaps = 11/111 (9%)

Query: 39  ERKRSEPAG-MGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRA 97
           ER    PAG  G  G    P  A   G + +      G P    + GPPG PA    R  
Sbjct: 510 ERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP--GSPGPDGKTGPPG-PAGQDGRPG 566

Query: 98  SIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPA 148
               PG R Q+           +PG     G   +AGE    G P + GPA
Sbjct: 567 PPGPPGARGQAGVMG-------FPGPKGAAGEPGKAGERGVPGPPGAVGPA 610



 Score = 32.3 bits (72), Expect = 0.30
 Identities = 31/108 (28%), Positives = 38/108 (35%), Gaps = 3/108 (2%)

Query: 42  RSEPAGMGQGGLLAPPTVAHTGGFR-PVLECEDGGGPAAGWQGGPPGYPASPSSRRASIP 100
           + EP   G  G   PP  A   G   P+      G   A    GPPG    P +    + 
Sbjct: 826 KGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAA-GRVG 884

Query: 101 QPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPA 148
            PG    +    P   + +  GG    G    AG   EVG P   GPA
Sbjct: 885 PPGPSGNAGPPGPPGPAGK-EGGKGPRGETGPAGRPGEVGPPGPPGPA 931



 Score = 32.0 bits (71), Expect = 0.39
 Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 75  GGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCR-YPGGLALEGWAWQA 133
           G P    Q G PG P  P +R  +        + +   PG    R  PG     G A + 
Sbjct: 554 GPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKD 613

Query: 134 GESKEVGNPQSAGPAPGQHPQ-PQPSP 159
           GE+   G P  AGPA  +  Q P  SP
Sbjct: 614 GEAGAQGPPGPAGPAGERGEQGPAGSP 640



 Score = 31.6 bits (70), Expect = 0.51
 Identities = 29/92 (31%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 79   AGWQG--GPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCR-YPGGLALEGWAWQAGE 135
            +G QG  GPPG P       AS P        S  +PG       PG +   G   + G+
Sbjct: 1114 SGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGD 1173

Query: 136  SKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWM 167
            +  VG P   GP PG    P P      FS++
Sbjct: 1174 AGPVGPPGPPGP-PG---PPGPPSAGFDFSFL 1201



 Score = 31.2 bits (69), Expect = 0.67
 Identities = 32/108 (29%), Positives = 40/108 (37%), Gaps = 25/108 (23%)

Query: 41   KRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIP 100
            +R  P  MG  GL  PP              E G   A G +G P G   SP ++     
Sbjct: 993  ERGPPGPMGPPGLAGPPG-------------ESGREGAPGAEGSP-GRDGSPGAK----- 1033

Query: 101  QPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPA 148
              G R ++  A P       PG     G    AG+S + G    AGPA
Sbjct: 1034 --GDRGETGPAGPPGA----PGAPGAPGPVGPAGKSGDRGETGPAGPA 1075



 Score = 28.9 bits (63), Expect = 3.3
 Identities = 32/113 (28%), Positives = 37/113 (32%), Gaps = 20/113 (17%)

Query: 41  KRSEPAGMGQGGLLAPPTVAHTG-----GFRPVLECEDGGGPAAGWQGGPPGYPASPSSR 95
           +R  P   G  GL  P T    G     GF  +   +   GPA     GP G P SP   
Sbjct: 243 ERGPPGPQGARGL--PGTAGLPGMKGHRGFSGLDGAKGDAGPA-----GPKGEPGSPGEN 295

Query: 96  RASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPA 148
            A        +   R  PG      PG     G     G +   G P   GPA
Sbjct: 296 GAPGQMGPRGLPGERGRPGA-----PGPAGARG---NDGATGAAGPPGPTGPA 340



 Score = 28.9 bits (63), Expect = 3.3
 Identities = 37/115 (32%), Positives = 43/115 (37%), Gaps = 17/115 (14%)

Query: 45  PAGMGQGGLLAPPTVAHTGGFRPV-LECEDGGGPAAGWQG-----GPPGYPASPSSRRAS 98
           P  MG  GL  P      G   P      DG   AAG  G     GPPG+P +  ++  +
Sbjct: 298 PGQMGPRGL--PGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEA 355

Query: 99  IPQPGHRMQSSRASPGCCSCR-YPGGLALEGWAWQAGESKEVGNP--QSAGPAPG 150
            P      Q  R S G    R  PG     G A  AG     G P  + A  APG
Sbjct: 356 GP------QGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPG 404


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 35/117 (29%), Positives = 43/117 (36%), Gaps = 13/117 (11%)

Query: 49  GQGGLLAPPTVAHTGGFRPVLECEDGG-----GPAAGWQGGPPGYPASPSSRRASIPQPG 103
           G+ G   PP  A   G  P    E GG      P    +GGPPG    P     + P   
Sbjct: 798 GERGETGPPGPAGFPG-APGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGP 856

Query: 104 HRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGP--APGQHPQPQPS 158
             ++  R SPG      PG     G     G     GNP   GP  +PG+   P P+
Sbjct: 857 QGVKGERGSPG-----GPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPA 908



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 33/121 (27%), Positives = 39/121 (32%), Gaps = 8/121 (6%)

Query: 45   PAGMGQ----GGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIP 100
            P G G     G   AP    H G   PV      G        GP G P    SR A  P
Sbjct: 1028 PGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGP 1087

Query: 101  QPGHRMQSSRASPGCCSCR----YPGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQ 156
            Q     +      G    +    +PG     G    AG+   +G+P  AGP     P   
Sbjct: 1088 QGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGP 1147

Query: 157  P 157
            P
Sbjct: 1148 P 1148



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 36/126 (28%), Positives = 44/126 (34%), Gaps = 14/126 (11%)

Query: 42  RSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQ 101
           + EP G G  G+  P      G   P+      G P    +GG PG P     R +    
Sbjct: 743 KGEPGGPGADGV--PGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGS---- 796

Query: 102 PGHRMQSSRASPGCCSCR-----YPGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQ 156
           PG R ++    P            PGG    G     GE  E G P  AGP  G  P   
Sbjct: 797 PGERGETGPPGPAGFPGAPGQNGEPGGKGERG---APGEKGEGGPPGVAGPPGGSGPAGP 853

Query: 157 PSPMSL 162
           P P  +
Sbjct: 854 PGPQGV 859



 Score = 35.8 bits (81), Expect = 0.027
 Identities = 40/133 (30%), Positives = 51/133 (38%), Gaps = 20/133 (15%)

Query: 41  KRSEPAGMGQGGLLAPPTVAHT-GGFRPV-------LECEDG--GGPAAGWQGGPPGYPA 90
           +R  P   G+GG   PP VA   GG  P        ++ E G  GGP A    G  G P 
Sbjct: 826 ERGAPGEKGEGG---PPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPG 882

Query: 91  SPSSRRASIPQPGHRMQSSRASPGCC-SCRYPGGLALEGWAWQAGESKEVGNPQSAGPAP 149
            P S     P            PG   +   PG   + G    AG+  E G+P + GP P
Sbjct: 883 PPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGP-P 941

Query: 150 GQHPQPQPSPMSL 162
           G      P P+ +
Sbjct: 942 G-----APGPLGI 949



 Score = 35.0 bits (79), Expect = 0.046
 Identities = 33/112 (29%), Positives = 38/112 (33%), Gaps = 11/112 (9%)

Query: 44   EPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPG 103
            +P   G  G   PP      G   +       GP      GP G P  P   +    +PG
Sbjct: 928  QPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPG--MPGPRGSPG-PQGVKGESGKPG 984

Query: 104  HRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQP 155
                S    P       PG   L G A  AGE    GNP S G  PG+   P
Sbjct: 985  ANGLSGERGP-------PGPQGLPGLAGTAGEPGRDGNPGSDG-LPGRDGSP 1028



 Score = 31.6 bits (70), Expect = 0.51
 Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 13/121 (10%)

Query: 45  PAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQG--GPPGYPASPSSRRASIPQP 102
           P G G  G+   P     GG  P  + + G   + G  G  GPPG P+ P  +   +  P
Sbjct: 530 PGGPGMRGMPGSP-----GG--PGSDGKPGPPGSQGESGRPGPPG-PSGPRGQPGVMGFP 581

Query: 103 GHRMQSSRASPGCCSCRY-PGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSPMS 161
           G +   +  +PG    R  PGG   +G   + GE+   G P   GP   +     P P  
Sbjct: 582 GPK--GNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQG 639

Query: 162 L 162
           L
Sbjct: 640 L 640



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 29/83 (34%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 76  GPAAGWQG--GPPGYPASP--SSRRASIPQPGHRMQSSRASPGCCSCRYP----GGLALE 127
           G  AG+ G  GPPG P  P  S    S   PG+  Q     PG      P    G +   
Sbjct: 167 GGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGY--QGPPGEPGQAGPSGPPGPPGAIGPS 224

Query: 128 GWAWQAGESKEVGNPQSAG-PAP 149
           G A + GES   G P   G P P
Sbjct: 225 GPAGKDGESGRPGRPGERGLPGP 247



 Score = 29.3 bits (64), Expect = 2.5
 Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 9/92 (9%)

Query: 73  DGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRY-----PGGLALE 127
           D G P    + G PG P  P S     P P    +S    P   S +Y       G+A+ 
Sbjct: 110 DPGPPGIPGRNGDPGIPGQPGS--PGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVG 167

Query: 128 GWAWQAGESKEVGNPQSAGPAPGQHPQPQPSP 159
           G A   G +   G P    P    HP    SP
Sbjct: 168 GLAGYPGPAGPPGPP--GPPGTSGHPGSPGSP 197



 Score = 28.5 bits (62), Expect = 4.3
 Identities = 25/106 (23%), Positives = 33/106 (31%), Gaps = 25/106 (23%)

Query: 41  KRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIP 100
           +R EP   G  G   PP      G            P    + GP G P +P        
Sbjct: 367 QRGEPGPQGHAGAQGPPGPPGING-----------SPGGKGEMGPAGIPGAPG------- 408

Query: 101 QPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAG 146
                +  +R  PG       G   L G A + G++   G P   G
Sbjct: 409 -----LMGARGPPGPAGAN--GAPGLRGGAGEPGKNGAKGEPGPRG 447



 Score = 28.5 bits (62), Expect = 4.3
 Identities = 33/122 (27%), Positives = 40/122 (32%), Gaps = 14/122 (11%)

Query: 41  KRSEPAGMGQGGLLAPPTVAHTGGFRPVL-----ECEDGGGPAAGWQGGP--PGYPASPS 93
           K   P   G+ G   PP  +   G   V+     +  DG     G +GGP  PG    P 
Sbjct: 550 KPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPG 609

Query: 94  SRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGP-----A 148
               + PQ            G      PG   L+G     G   E G P   GP     A
Sbjct: 610 KNGETGPQGPPGPTGPGGDKG--DTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGA 667

Query: 149 PG 150
           PG
Sbjct: 668 PG 669



 Score = 28.1 bits (61), Expect = 5.6
 Identities = 35/129 (27%), Positives = 40/129 (31%), Gaps = 13/129 (10%)

Query: 32  PQVKQTHERKRSEPAGMGQGG------LLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGP 85
           P   Q  + +R  P G G  G      L  PP     G   P       G P      GP
Sbjct: 853 PPGPQGVKGERGSPGGPGAAGFPGARGLPGPP--GSNGNPGPP---GPSGSPGKDGPPGP 907

Query: 86  PGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSA 145
            G   +P S   S P+        + SPG      PG     G A   G     G P   
Sbjct: 908 AGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQG--PPGAPGPLGIAGITGARGLAGPPGMP 965

Query: 146 GPAPGQHPQ 154
           GP     PQ
Sbjct: 966 GPRGSPGPQ 974



 Score = 27.7 bits (60), Expect = 7.4
 Identities = 28/106 (26%), Positives = 35/106 (33%), Gaps = 19/106 (17%)

Query: 41  KRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIP 100
           K  EP   G  G  AP      G         D G P    + GPPG   +P  R  + P
Sbjct: 655 KPGEPGPKGDAG--APGAPGGKG---------DAGAPG---ERGPPGLAGAPGLRGGAGP 700

Query: 101 QPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAG 146
                 + +   PG      PG     G     GE   +G+P   G
Sbjct: 701 PGPEGGKGAAGPPG-----PPGAAGTPGLQGMPGERGGLGSPGPKG 741


>gi|5730045 solute carrier family 16, member 2 [Homo sapiens]
          Length = 613

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 16/103 (15%)

Query: 72  EDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAW 131
           E GGG +      PP   +S SSR    PQ G    SS + P   + +       +G  W
Sbjct: 32  EPGGGGSGSGSSSPPS-SSSCSSRNKYQPQSGSSGPSSHSPPAAMALQSQASEEAKG-PW 89

Query: 132 QAGESKE---VGNPQSAG-----------PAPGQHPQPQPSPM 160
           Q  + ++   VG+P+              P P   PQP+P P+
Sbjct: 90  QEADQEQQEPVGSPEPESEPEPEPEPEPVPVPPPEPQPEPQPL 132


>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
          Length = 1499

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 36/122 (29%), Positives = 42/122 (34%), Gaps = 13/122 (10%)

Query: 44   EPAGMGQGGLLAPP----TVAHTGGFRPVLECEDGGGPAAGWQGGPPGYP--ASPSSRRA 97
            EP   G  GL   P     V   G   P     D G P    Q GP G P  A  + +R 
Sbjct: 934  EPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRG 993

Query: 98   SIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQP 157
             +  PG R    R  PG      PG     G     G + + G P   GP     P  +P
Sbjct: 994  IVGMPGQR--GERGMPGL-----PGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEP 1046

Query: 158  SP 159
             P
Sbjct: 1047 GP 1048



 Score = 32.3 bits (72), Expect = 0.30
 Identities = 31/119 (26%), Positives = 41/119 (34%), Gaps = 23/119 (19%)

Query: 49  GQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGY--PASPSSRRASIPQPGHRM 106
           G+ G + P  +  + GF         G P    + GP G   P  P  +R     PG   
Sbjct: 363 GKPGPMGPLGIPGSSGFP--------GNPGMKGEAGPTGARGPEGPQGQRGETGPPG--- 411

Query: 107 QSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGN---PQSAGPAPGQHPQPQPSPMSL 162
                SPG      PG +  +G     G +   G    P SAGP     PQ    P  +
Sbjct: 412 --PVGSPGL-----PGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGI 463



 Score = 31.2 bits (69), Expect = 0.67
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 13/96 (13%)

Query: 75  GGPAAGWQGGPPGYPASP---------SSRRASIPQP---GHRMQSSRASPGCCSCRYPG 122
           G P      GPPG+P+ P         S++ A + +    G ++     S G    R P 
Sbjct: 165 GVPGQPGAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVGPVGPRGPQ 224

Query: 123 GL-ALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQP 157
           GL   +G A   G   E G+P   GP   + P+  P
Sbjct: 225 GLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPP 260



 Score = 27.3 bits (59), Expect = 9.6
 Identities = 35/135 (25%), Positives = 47/135 (34%), Gaps = 27/135 (20%)

Query: 41  KRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQG-----GPPGYPASPSS- 94
           ++ EP   G  GL+ PP      G R     E+G   A G+ G     G PG    P   
Sbjct: 814 EKGEP---GPRGLVGPPGSRGNPGSRG----ENGPTGAVGFAGPQGPDGQPGVKGEPGEP 866

Query: 95  -RRASIPQPGHRMQSSRASP-----------GCCSCRYPGGLALEGWAWQAGESKEVGNP 142
            ++     PG +  +    P           G  +   PG     G A + G     G P
Sbjct: 867 GQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAP 926

Query: 143 QSAGP--APGQHPQP 155
             AGP   PG+   P
Sbjct: 927 GPAGPLGEPGKEGPP 941


>gi|58218966 hypothetical protein LOC339201 [Homo sapiens]
          Length = 193

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 38/124 (30%), Positives = 47/124 (37%), Gaps = 15/124 (12%)

Query: 43  SEPAGMGQGGLLAP--PTVAHTGGFRPVLECEDGGGPAAG--WQGGPPGYPASPSSRRAS 98
           S P    QG L AP  P V   G   P       G PAA   W  GPP +      R A+
Sbjct: 2   SGPPSAPQGALAAPRSPAVRRKGLQAP--SWGSPGRPAAHSPWACGPPHWGPQRGPRNAA 59

Query: 99  IPQPGHRMQ-SSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQP 157
             +PG R +   R +  C +C  P G  L        +    G PQ         P+PQ 
Sbjct: 60  AARPGPRSRWHKRCAAACGACARPPGHQL--------QPPGAGAPQPGVACSYLGPRPQR 111

Query: 158 SPMS 161
           +P S
Sbjct: 112 TPCS 115


>gi|19924103 synapsin II isoform IIa [Homo sapiens]
          Length = 582

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 50/186 (26%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 17  EPRALDTSLESSNLLPQVKQTHERKRSEP--AGMGQGGLLAPPTVAHTGGFRPVLECEDG 74
           E R L T L  S +   + +T       P      Q G L  P  + T   RP  +    
Sbjct: 401 EDRQLITELVISKMNQLLSRTPALSPQRPLTTQQPQSGTLKDPDSSKTPPQRPPPQ---- 456

Query: 75  GGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSC-RYPGGLALEGWAWQA 133
           GGP       PPG    P   R   P P     SS +S    S  + PGG    G A  +
Sbjct: 457 GGPGQPQGMQPPGKVLPP---RRLPPGPSLPPSSSSSSSSSSSAPQRPGGPTTHGDAPSS 513

Query: 134 GESKEVGNPQSAGPAPGQHPQPQPSPMSLL---FSWMWSGLFSLNKGPPCRMMSSVATLR 190
             S     P  A P     P PQ +    L   FS+  S  F  +         ++ +LR
Sbjct: 514 SSSLAEAQPPLAAPPQKPQPHPQLNKSQSLTNAFSFSESSFFRSSANEDEAKAETIRSLR 573

Query: 191 KASSTL 196
           K+ ++L
Sbjct: 574 KSFASL 579


>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
          Length = 2285

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 40/147 (27%), Positives = 53/147 (36%), Gaps = 28/147 (19%)

Query: 46  AGMGQGGLLAPPTVAHTGGF---RPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQP 102
           AG G GG  A P + ++ G    RP L       P  G  G   G  A P S  A++P P
Sbjct: 88  AGSG-GGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPP 146

Query: 103 G----------------------HRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVG 140
                                  H+    + SPG  + +  GG  LE +A     S + G
Sbjct: 147 AYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGPQQNSHDHG 206

Query: 141 --NPQSAGPAPGQHPQPQPSPMSLLFS 165
             N Q     P +   P P+P   L S
Sbjct: 207 FPNHQYNSYYPNRSAYPPPAPAYALSS 233


>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
          Length = 2068

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 40/147 (27%), Positives = 53/147 (36%), Gaps = 28/147 (19%)

Query: 46  AGMGQGGLLAPPTVAHTGGF---RPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQP 102
           AG G GG  A P + ++ G    RP L       P  G  G   G  A P S  A++P P
Sbjct: 88  AGSG-GGPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPP 146

Query: 103 G----------------------HRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVG 140
                                  H+    + SPG  + +  GG  LE +A     S + G
Sbjct: 147 AYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGPQQNSHDHG 206

Query: 141 --NPQSAGPAPGQHPQPQPSPMSLLFS 165
             N Q     P +   P P+P   L S
Sbjct: 207 FPNHQYNSYYPNRSAYPPPAPAYALSS 233


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 44  EPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPG 103
           EP   G  GL   P     G   P  +    G P    + GPPG P     +   +  PG
Sbjct: 553 EPGLPGARGLTGRP-----GDAGPQGKVGPSGAPGEDGRPGPPG-PQGARGQPGVMGFPG 606

Query: 104 HRMQSSRASPGCCSCR-YPGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSP 159
            +   +   PG    +  PG   L G   + GE+   G P  AGPA  +  Q  P P
Sbjct: 607 PK--GANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP 661



 Score = 32.0 bits (71), Expect = 0.39
 Identities = 32/113 (28%), Positives = 39/113 (34%), Gaps = 22/113 (19%)

Query: 47  GMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRM 106
           G G  G + PP  A   G       E G       + GPPG   S  +R A    PG R 
Sbjct: 784 GRGLTGPIGPPGPAGANG-------EKG-------EVGPPGPAGSAGARGA----PGERG 825

Query: 107 QSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSP 159
           ++    P      + G    +G     GE  E G    AG    Q P   P P
Sbjct: 826 ETGPPGPA----GFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGP 874



 Score = 31.6 bits (70), Expect = 0.51
 Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 19/112 (16%)

Query: 41   KRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIP 100
            ++ EP   G  G   PP      G R ++     G P    + G PG P  PS       
Sbjct: 955  EKGEPGDDGPSGAEGPPGPQGLAGQRGIV-----GLPGQRGERGFPGLPG-PSG------ 1002

Query: 101  QPGHRMQSSRASPGCCSCRYPGG-LALEGWAWQAGESKEVGNPQSAGPAPGQ 151
            +PG      + +PG    R P G +   G    AGE    G+P + GP PG+
Sbjct: 1003 EPG-----KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP-PGR 1048



 Score = 30.8 bits (68), Expect = 0.87
 Identities = 38/139 (27%), Positives = 48/139 (34%), Gaps = 37/139 (26%)

Query: 39  ERKRSEPAGM-------GQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPAS 91
           ER R+ PAG        GQ G   PP         PV       GPA G     PG+P +
Sbjct: 331 ERGRTGPAGAAGARGNDGQPGPAGPPG--------PV-------GPAGG-----PGFPGA 370

Query: 92  PSSRRASIP---QPGHRMQSSRASPGCCSCRYPGGLA-------LEGWAWQAGESKEVGN 141
           P ++  + P   +     Q  R  PG      P G +       + G    AG     G 
Sbjct: 371 PGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGA 430

Query: 142 PQSAGPAPGQHPQPQPSPM 160
           P   GP     PQ    P+
Sbjct: 431 PGFPGPRGPPGPQGATGPL 449



 Score = 30.8 bits (68), Expect = 0.87
 Identities = 33/125 (26%), Positives = 39/125 (31%), Gaps = 12/125 (9%)

Query: 42  RSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGG----------PAAGWQGGPPGYPAS 91
           R  P   G+ G   PP  A   G R         G          P  G + G  G P  
Sbjct: 629 RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGE 688

Query: 92  PSSRRASIPQPGHRMQSSRASPGCCSCRYPGGL-ALEGWAWQAGESKEVGNPQSAGPAPG 150
             +     P+        R SPG    + P GL    G     G S   G P + GP PG
Sbjct: 689 AGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGP-PG 747

Query: 151 QHPQP 155
               P
Sbjct: 748 LQGMP 752



 Score = 30.8 bits (68), Expect = 0.87
 Identities = 37/134 (27%), Positives = 47/134 (35%), Gaps = 22/134 (16%)

Query: 45  PAGM-GQGGLLAPPTVAHTGGFRPVL-ECEDGGGPAAGWQGGPPGYPASPSSR------- 95
           PAG  G+ G + PP  A + G R    E  + G P      GPPG    P ++       
Sbjct: 796 PAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAG 855

Query: 96  -RASIPQPGHRMQSSRASP-------GCCSCRY----PGGLALEGWAWQAGESKEVGNPQ 143
            +     PG +  S    P       G    R     PG     G A + G     GNP 
Sbjct: 856 QKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPG 915

Query: 144 SAGPAPGQHPQPQP 157
             GP PG   +  P
Sbjct: 916 PPGP-PGPSGKDGP 928



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 75  GGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAG 134
           G P A  + GPPG   +P       P      + +R   G      PG     G    AG
Sbjct: 897 GFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGP-----PGRAGEPGLQGPAG 951

Query: 135 ESKEVGNPQSAGPAPGQHPQPQPSPMSL 162
              E G P   GP+  + P   P P  L
Sbjct: 952 PPGEKGEPGDDGPSGAEGP---PGPQGL 976


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 44  EPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPG 103
           EP   G  GL   P     G   P  +    G P    + GPPG P     +   +  PG
Sbjct: 484 EPGLPGARGLTGRP-----GDAGPQGKVGPSGAPGEDGRPGPPG-PQGARGQPGVMGFPG 537

Query: 104 HRMQSSRASPGCCSCR-YPGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSP 159
            +   +   PG    +  PG   L G   + GE+   G P  AGPA  +  Q  P P
Sbjct: 538 PK--GANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGP 592



 Score = 32.0 bits (71), Expect = 0.39
 Identities = 32/113 (28%), Positives = 39/113 (34%), Gaps = 22/113 (19%)

Query: 47  GMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRM 106
           G G  G + PP  A   G       E G       + GPPG   S  +R A    PG R 
Sbjct: 715 GRGLTGPIGPPGPAGANG-------EKG-------EVGPPGPAGSAGARGA----PGERG 756

Query: 107 QSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPAPGQHPQPQPSP 159
           ++    P      + G    +G     GE  E G    AG    Q P   P P
Sbjct: 757 ETGPPGPA----GFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGP 805



 Score = 31.6 bits (70), Expect = 0.51
 Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 19/112 (16%)

Query: 41  KRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRRASIP 100
           ++ EP   G  G   PP      G R ++     G P    + G PG P  PS       
Sbjct: 886 EKGEPGDDGPSGAEGPPGPQGLAGQRGIV-----GLPGQRGERGFPGLPG-PSG------ 933

Query: 101 QPGHRMQSSRASPGCCSCRYPGG-LALEGWAWQAGESKEVGNPQSAGPAPGQ 151
           +PG      + +PG    R P G +   G    AGE    G+P + GP PG+
Sbjct: 934 EPG-----KQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGP-PGR 979



 Score = 30.8 bits (68), Expect = 0.87
 Identities = 38/139 (27%), Positives = 48/139 (34%), Gaps = 37/139 (26%)

Query: 39  ERKRSEPAGM-------GQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPAS 91
           ER R+ PAG        GQ G   PP         PV       GPA G     PG+P +
Sbjct: 262 ERGRTGPAGAAGARGNDGQPGPAGPPG--------PV-------GPAGG-----PGFPGA 301

Query: 92  PSSRRASIP---QPGHRMQSSRASPGCCSCRYPGGLA-------LEGWAWQAGESKEVGN 141
           P ++  + P   +     Q  R  PG      P G +       + G    AG     G 
Sbjct: 302 PGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGA 361

Query: 142 PQSAGPAPGQHPQPQPSPM 160
           P   GP     PQ    P+
Sbjct: 362 PGFPGPRGPPGPQGATGPL 380



 Score = 30.8 bits (68), Expect = 0.87
 Identities = 33/125 (26%), Positives = 39/125 (31%), Gaps = 12/125 (9%)

Query: 42  RSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGG----------PAAGWQGGPPGYPAS 91
           R  P   G+ G   PP  A   G R         G          P  G + G  G P  
Sbjct: 560 RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGE 619

Query: 92  PSSRRASIPQPGHRMQSSRASPGCCSCRYPGGL-ALEGWAWQAGESKEVGNPQSAGPAPG 150
             +     P+        R SPG    + P GL    G     G S   G P + GP PG
Sbjct: 620 AGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGP-PG 678

Query: 151 QHPQP 155
               P
Sbjct: 679 LQGMP 683



 Score = 30.8 bits (68), Expect = 0.87
 Identities = 37/134 (27%), Positives = 47/134 (35%), Gaps = 22/134 (16%)

Query: 45  PAGM-GQGGLLAPPTVAHTGGFRPVL-ECEDGGGPAAGWQGGPPGYPASPSSR------- 95
           PAG  G+ G + PP  A + G R    E  + G P      GPPG    P ++       
Sbjct: 727 PAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAG 786

Query: 96  -RASIPQPGHRMQSSRASP-------GCCSCRY----PGGLALEGWAWQAGESKEVGNPQ 143
            +     PG +  S    P       G    R     PG     G A + G     GNP 
Sbjct: 787 QKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPG 846

Query: 144 SAGPAPGQHPQPQP 157
             GP PG   +  P
Sbjct: 847 PPGP-PGPSGKDGP 859



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 75  GGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAG 134
           G P A  + GPPG   +P       P      + +R   G      PG     G    AG
Sbjct: 828 GFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGP-----PGRAGEPGLQGPAG 882

Query: 135 ESKEVGNPQSAGPAPGQHPQPQPSPMSL 162
              E G P   GP+  + P   P P  L
Sbjct: 883 PPGEKGEPGDDGPSGAEGP---PGPQGL 907


>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 350

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)

Query: 88  YPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGP 147
           YP +        P PG R ++ ++ PGC S  +P      G   +AG  +  G+P+   P
Sbjct: 141 YPRAVPEATPLRPPPGTRPRA-KSRPGCRSSPFPARSRTPG---EAGPPR--GDPRPRAP 194

Query: 148 APGQHPQPQPS 158
            PG HP+  P+
Sbjct: 195 RPGDHPRRSPA 205


>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
           preproprotein [Homo sapiens]
          Length = 331

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 36/128 (28%), Positives = 44/128 (34%), Gaps = 9/128 (7%)

Query: 32  PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPAS 91
           P  +    R    P G  QG    PP   +     P    +  G P  G  G  P  P  
Sbjct: 202 PPPQGDKSRSSQSPPGKPQG---PPPQGGNQPQGPPPPPGKPQGPPPQG--GNKPQGPPP 256

Query: 92  PSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGPAPGQ 151
           P   +    Q G + QS+R+ PG    +  G    EG   Q       GNPQ     P  
Sbjct: 257 PGKPQGPPAQGGSKSQSARSPPG----KPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAG 312

Query: 152 HPQPQPSP 159
            PQ  P P
Sbjct: 313 QPQGPPRP 320



 Score = 35.8 bits (81), Expect = 0.027
 Identities = 37/134 (27%), Positives = 46/134 (34%), Gaps = 23/134 (17%)

Query: 32  PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPAS 91
           P  +    R    P G  QG    PP     GG +P      G  P  G   GPP    +
Sbjct: 80  PPPQGDKSRSPRSPPGKPQG----PPP---QGGNQP-----QGPPPPPGKPQGPPPQGGN 127

Query: 92  ------PSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSA 145
                 P  +    P  G + +S R+ PG      P G   +G     G     G PQ  
Sbjct: 128 RPQGPPPPGKPQGPPPQGDKSRSPRSPPG-----KPQGPPPQGGNQPQGPPPPPGKPQGP 182

Query: 146 GPAPGQHPQPQPSP 159
            P  G+ PQ  P P
Sbjct: 183 PPQGGKKPQGPPPP 196



 Score = 35.8 bits (81), Expect = 0.027
 Identities = 39/135 (28%), Positives = 47/135 (34%), Gaps = 25/135 (18%)

Query: 32  PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQGGPPGY--- 88
           P  +    R    P G  QG    PP     GG +P      G  P  G   GPP     
Sbjct: 141 PPPQGDKSRSPRSPPGKPQG----PPP---QGGNQP-----QGPPPPPGKPQGPPPQGGK 188

Query: 89  ----PASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQS 144
               P  P   +   PQ G + +SS++ PG      P G   +G     G     G PQ 
Sbjct: 189 KPQGPPPPGKPQGPPPQ-GDKSRSSQSPPG-----KPQGPPPQGGNQPQGPPPPPGKPQG 242

Query: 145 AGPAPGQHPQPQPSP 159
             P  G  PQ  P P
Sbjct: 243 PPPQGGNKPQGPPPP 257



 Score = 35.0 bits (79), Expect = 0.046
 Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 85  PPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQS 144
           PPG P  P       P  G + +S R+ PG      P G   +G     G     G PQ 
Sbjct: 73  PPGKPQGP-------PPQGDKSRSPRSPPG-----KPQGPPPQGGNQPQGPPPPPGKPQG 120

Query: 145 AGPAPGQHPQPQPSP 159
             P  G  PQ  P P
Sbjct: 121 PPPQGGNRPQGPPPP 135


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 45/132 (34%), Positives = 50/132 (37%), Gaps = 16/132 (12%)

Query: 41   KRSEPAGMGQGGLLAP-PTVAHTGGFRPVLECEDGGGPAAGWQGGPPGYPASPSSRR--- 96
            K  EP   G  GL  P  T A  G  R    C  GG    G +G P G P SP SR    
Sbjct: 985  KDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAP-GIPGSPGSRGDPG 1043

Query: 97   ---ASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAGP--APGQ 151
               A  P P       + SPG  S   PG    +G    AG     GNP   GP   PG 
Sbjct: 1044 IGVAGPPGPS-GPPGDKGSPG--SRGLPGFPGPQG---PAGRDGAPGNPGERGPPGKPGL 1097

Query: 152  HPQPQPSPMSLL 163
                 P  ++LL
Sbjct: 1098 SSLLSPGDINLL 1109



 Score = 28.9 bits (63), Expect = 3.3
 Identities = 34/131 (25%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 35   KQTHERKRSEPAGMGQGGLLAPPTVAHTGGFR-------PVLECEDGGGPAAGWQGGPPG 87
            K   E    +    G  GL  PP +A   G +        V +  D G P      GPPG
Sbjct: 1139 KPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPG 1198

Query: 88   YPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGL-ALEGWAWQAGESKEVGNPQSAG 146
             P  P +   +       +Q S    G    + P GL  + G   + G   + G P   G
Sbjct: 1199 NPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPG 1258

Query: 147  PAPGQHPQPQP 157
             A G+   P P
Sbjct: 1259 KA-GEPGLPGP 1268


>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
          Length = 2263

 Score = 36.2 bits (82), Expect = 0.021
 Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 21/120 (17%)

Query: 32   PQVKQTHERKRSEPAGMGQGGLLAPPTVAHTGGFRPVLECEDGGGPAAGWQG--GPPGYP 89
            PQ  +     + E  G+G  G   PP                G G  AG QG  G  G  
Sbjct: 1583 PQGPRGEAGVKGEKGGVGSKGPQGPP----------------GPGGEAGNQGRLGSQGNK 1626

Query: 90   ASPSS--RRASIPQPGHR-MQSSRASPGCCSCRYPGGLALEGWAWQAGESKEVGNPQSAG 146
              P     + ++  PG R +Q +  SPG  S    G    EG+  ++G   E+G+P   G
Sbjct: 1627 GEPGDLGEKGAVGFPGPRGLQGNDGSPGYGSVGRKGAKGQEGFPGESGPKGEIGDPGGPG 1686


>gi|169171580 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 197

 Score = 36.2 bits (82), Expect = 0.021
 Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 72  EDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAW 131
           E   G  AG +G       +P +R   +    H+ +   A+PG  S R PG  A+     
Sbjct: 55  ESRDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGA-AVPSCFP 113

Query: 132 QAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPCRMMSSVATLRK 191
            A   +++G P   GP+P Q   P  SP         SG        P R   S+A  R+
Sbjct: 114 TAAAHRDLGEP-GRGPSPSQASGPSRSPRVPPAHPELSG---SRPRSPRRPRGSIAAARE 169

Query: 192 ASSTLLESLA 201
           A   LL+  A
Sbjct: 170 ALRELLKPCA 179


>gi|113419324 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 197

 Score = 36.2 bits (82), Expect = 0.021
 Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 72  EDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAW 131
           E   G  AG +G       +P +R   +    H+ +   A+PG  S R PG  A+     
Sbjct: 55  ESRDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGA-AVPSCFP 113

Query: 132 QAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPCRMMSSVATLRK 191
            A   +++G P   GP+P Q   P  SP         SG        P R   S+A  R+
Sbjct: 114 TAAAHRDLGEP-GRGPSPSQASGPSRSPRVPPAHPELSG---SRPRSPRRPRGSIAAARE 169

Query: 192 ASSTLLESLA 201
           A   LL+  A
Sbjct: 170 ALRELLKPCA 179


>gi|239747677 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 262

 Score = 36.2 bits (82), Expect = 0.021
 Identities = 40/104 (38%), Positives = 46/104 (44%), Gaps = 16/104 (15%)

Query: 77  PAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSC-RYPGGLA-LEGWAWQAG 134
           P AG    PPG    PS RRA I QP  R QSS  SP  C C   PG  A        AG
Sbjct: 120 PRAGPAPPPPG---PPSLRRAPINQP-RRCQSSGGSPRRCHCSSVPGAPAPASQLPRPAG 175

Query: 135 ESKEVGNPQSAGPAPGQHP-----QPQPSPMSLLFSWMWSGLFS 173
           E  +V  P SA   PG+       +P  SP     +  W+G+ S
Sbjct: 176 EVNKVKYP-SAARGPGRSTLGVGCEPAASPA----AGGWAGVTS 214


>gi|113418864 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 197

 Score = 36.2 bits (82), Expect = 0.021
 Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 72  EDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAW 131
           E   G  AG +G       +P +R   +    H+ +   A+PG  S R PG  A+     
Sbjct: 55  ESRDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGA-AVPSCFP 113

Query: 132 QAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPCRMMSSVATLRK 191
            A   +++G P   GP+P Q   P  SP         SG        P R   S+A  R+
Sbjct: 114 TAAAHRDLGEP-GRGPSPSQASGPSRSPRVPPAHPELSG---SRPRSPRRPRGSIAAARE 169

Query: 192 ASSTLLESLA 201
           A   LL+  A
Sbjct: 170 ALRELLKPCA 179


>gi|239741546 PREDICTED: hypothetical protein XP_002342233 [Homo
           sapiens]
          Length = 262

 Score = 36.2 bits (82), Expect = 0.021
 Identities = 40/104 (38%), Positives = 46/104 (44%), Gaps = 16/104 (15%)

Query: 77  PAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSC-RYPGGLA-LEGWAWQAG 134
           P AG    PPG    PS RRA I QP  R QSS  SP  C C   PG  A        AG
Sbjct: 120 PRAGPAPPPPG---PPSLRRAPINQP-RRCQSSGGSPRRCHCSSVPGAPAPASQLPRPAG 175

Query: 135 ESKEVGNPQSAGPAPGQHP-----QPQPSPMSLLFSWMWSGLFS 173
           E  +V  P SA   PG+       +P  SP     +  W+G+ S
Sbjct: 176 EVNKVKYP-SAARGPGRSTLGVGCEPAASPA----AGGWAGVTS 214


>gi|239509076 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 197

 Score = 36.2 bits (82), Expect = 0.021
 Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 72  EDGGGPAAGWQGGPPGYPASPSSRRASIPQPGHRMQSSRASPGCCSCRYPGGLALEGWAW 131
           E   G  AG +G       +P +R   +    H+ +   A+PG  S R PG  A+     
Sbjct: 55  ESRDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGA-AVPSCFP 113

Query: 132 QAGESKEVGNPQSAGPAPGQHPQPQPSPMSLLFSWMWSGLFSLNKGPPCRMMSSVATLRK 191
            A   +++G P   GP+P Q   P  SP         SG        P R   S+A  R+
Sbjct: 114 TAAAHRDLGEP-GRGPSPSQASGPSRSPRVPPAHPELSG---SRPRSPRRPRGSIAAARE 169

Query: 192 ASSTLLESLA 201
           A   LL+  A
Sbjct: 170 ALRELLKPCA 179


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.130    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,638,708
Number of Sequences: 37866
Number of extensions: 793693
Number of successful extensions: 4927
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 419
Number of HSP's that attempted gapping in prelim test: 3895
Number of HSP's gapped (non-prelim): 1311
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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