Guide to the Human Genome
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Name: LOC100290553 Sequence: fasta or formatted (210aa) NCBI GI: 239751071
Description:

PREDICTED: hypothetical protein XP_002347706

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         21           2
 C cysteine            2.9          6           2
 D aspartate           2.4          5           2
 E glutamate           5.7         12           2
 F phenylalanine       1.4          3           1
 G glycine            11.4         24           3
 H histidine           2.4          5           1
 I isoleucine          0.5          1           1
 K lysine              2.4          5           1
 L leucine            10.0         21           3
 M methionine          4.3          9           2
 N asparagine          1.0          2           1
 P proline            11.9         25           2
 Q glutamine           5.7         12           1
 R arginine            6.2         13           2
 S serine             12.9         27           2
 T threonine           2.9          6           1
 V valine              2.9          6           1
 W tryptophan          2.4          5           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347706 
LOC100293867          1.000   PREDICTED: hypothetical protein 
LOC100131426          1.000   PREDICTED: hypothetical protein 
LOC100287282          1.000   PREDICTED: hypothetical protein XP_002344162 
LOC100131426          0.998   PREDICTED: hypothetical protein 
LOC100131426          0.998   PREDICTED: hypothetical protein isoform 2 
LOC100131426          0.998   PREDICTED: hypothetical protein isoform 1 
SYN1                  0.041   synapsin I isoform Ia 
SYN1                  0.041   synapsin I isoform Ib 
PRB2                  0.041   proline-rich protein BstNI subfamily 2 
SLC16A2               0.039   solute carrier family 16, member 2 
COL1A1                0.036   alpha 1 type I collagen preproprotein 
C17orf65              0.036   hypothetical protein LOC339201 
COL3A1                0.036   collagen type III alpha 1 preproprotein 
COL5A2                0.036   alpha 2 type V collagen preproprotein 
SYN2                  0.034   synapsin II isoform IIa 
ARID1A                0.031   AT rich interactive domain 1A isoform a 
ARID1A                0.031   AT rich interactive domain 1A isoform b 
COL2A1                0.029   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.029   collagen, type II, alpha 1 isoform 2 precursor [Hom...
CHRM1                 0.029   cholinergic receptor, muscarinic 1 
EPN3                  0.029   epsin 3 
LOC729986             0.027   PREDICTED: hypothetical protein 
LOC729986             0.027   PREDICTED: hypothetical protein 
LOC100130360          0.027   PREDICTED: hypothetical protein 
LOC100288243          0.027   PREDICTED: hypothetical protein 
LOC729986             0.027   PREDICTED: hypothetical protein 
LOC100288243          0.027   PREDICTED: hypothetical protein XP_002342233 
LOC729986             0.027   PREDICTED: hypothetical protein 
MYLK2                 0.027   skeletal myosin light chain kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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