Guide to the Human Genome
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Search of human proteins with 169164740

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169164740 PREDICTED: similar to hCG1646178 [Homo sapiens]
         (177 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169164317 PREDICTED: similar to hCG1646178 [Homo sapiens]          359   e-100
gi|169164740 PREDICTED: similar to hCG1646178 [Homo sapiens]          359   e-100
gi|239741779 PREDICTED: hypothetical protein XP_002342290 [Homo ...   359   e-100
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]       72   2e-13
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]       72   2e-13
gi|83700225 hydrogen/potassium-exchanging ATPase 12A [Homo sapiens]    52   2e-07
gi|237681109 Na+/K+ -ATPase alpha 1 subunit isoform c [Homo sapi...    40   8e-04
gi|237681111 Na+/K+ -ATPase alpha 1 subunit isoform d [Homo sapi...    40   8e-04
gi|21361181 Na+/K+ -ATPase alpha 1 subunit isoform a [Homo sapiens]    40   8e-04
gi|4502271 Na+/K+ -ATPase alpha 2 subunit proprotein [Homo sapiens]    39   0.002
gi|22748667 Na+/K+ -ATPase alpha 3 subunit [Homo sapiens]              39   0.002
gi|222352161 ATPase, class V, type 10D [Homo sapiens]                  39   0.003
gi|55956910 meningioma  1 [Homo sapiens]                               37   0.012
gi|153946397 Na+/K+ -ATPase alpha 4 subunit isoform 1 [Homo sapi...    37   0.012
gi|10863899 numb homolog (Drosophila)-like [Homo sapiens]              33   0.099
gi|73476377 LBXCOR1 homolog [Homo sapiens]                             33   0.13 
gi|21361151 transducin-like enhancer protein 2 isoform 1 [Homo s...    33   0.13 
gi|21264353 SWI/SNF related, matrix associated, actin dependent ...    33   0.13 
gi|51477704 SWI/SNF related, matrix associated, actin dependent ...    33   0.13 
gi|51477702 SWI/SNF related, matrix associated, actin dependent ...    33   0.13 
gi|6912230 adenosine deaminase, tRNA-specific 1 [Homo sapiens]         33   0.13 
gi|221219048 transducin-like enhancer protein 2 isoform 2 [Homo ...    33   0.17 
gi|239751461 PREDICTED: hypothetical protein XP_002347871 [Homo ...    32   0.22 
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]          32   0.22 
gi|7657218 bromodomain-containing protein 4 isoform short [Homo ...    32   0.29 
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ...    32   0.29 
gi|150170670 piccolo isoform 2 [Homo sapiens]                          32   0.29 
gi|150378539 piccolo isoform 1 [Homo sapiens]                          32   0.29 
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]       32   0.38 
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]       32   0.38 

>gi|169164317 PREDICTED: similar to hCG1646178 [Homo sapiens]
          Length = 177

 Score =  359 bits (922), Expect = e-100
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET 60
           MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET
Sbjct: 1   MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET 60

Query: 61  RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR 120
           RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR
Sbjct: 61  RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR 120

Query: 121 SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES 177
           SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES
Sbjct: 121 SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES 177


>gi|169164740 PREDICTED: similar to hCG1646178 [Homo sapiens]
          Length = 177

 Score =  359 bits (922), Expect = e-100
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET 60
           MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET
Sbjct: 1   MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET 60

Query: 61  RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR 120
           RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR
Sbjct: 61  RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR 120

Query: 121 SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES 177
           SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES
Sbjct: 121 SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES 177


>gi|239741779 PREDICTED: hypothetical protein XP_002342290 [Homo
           sapiens]
          Length = 177

 Score =  359 bits (922), Expect = e-100
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET 60
           MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET
Sbjct: 1   MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET 60

Query: 61  RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR 120
           RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR
Sbjct: 61  RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR 120

Query: 121 SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES 177
           SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES
Sbjct: 121 SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES 177


>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
          Length = 788

 Score = 72.4 bits (176), Expect = 2e-13
 Identities = 43/78 (55%), Positives = 50/78 (64%)

Query: 98  DPREPRHQKGCGKTSLLDALTVRSQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTT 157
           D  E R +      SLLD LT  S+RCPL+TL K EIALEK K+D+ VPTP  P  P T 
Sbjct: 554 DKNEDRKKDLSKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTK 613

Query: 158 QQHLRWPLLEAGLARICS 175
           QQ+L  PLL+A LA I S
Sbjct: 614 QQYLCQPLLDAVLANIRS 631



 Score = 30.0 bits (66), Expect = 1.1
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 39  QEQQQQALQAQCQYSSHQCNETRLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRD 98
           Q+QQQQALQAQ         +          QP  + A+P Q +     Q    PP+ + 
Sbjct: 257 QQQQQQALQAQPPIQQPPMQQP---------QPPPSQALPQQLQQMHHTQHHQPPPQPQQ 307

Query: 99  PREPRHQKG-CGKTSLLDALTVRSQRCPLETLW-KPEIALEKRKHDLEVPTPRVPLAPLT 156
           P   ++Q       S    L  ++Q  P + L+ +P +   +    ++ P    P+ P  
Sbjct: 308 PPVAQNQPSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQP----PVQPQV 363

Query: 157 TQQ 159
            QQ
Sbjct: 364 QQQ 366


>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
          Length = 748

 Score = 72.4 bits (176), Expect = 2e-13
 Identities = 43/78 (55%), Positives = 50/78 (64%)

Query: 98  DPREPRHQKGCGKTSLLDALTVRSQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTT 157
           D  E R +      SLLD LT  S+RCPL+TL K EIALEK K+D+ VPTP  P  P T 
Sbjct: 514 DKNEDRKKDLSKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTK 573

Query: 158 QQHLRWPLLEAGLARICS 175
           QQ+L  PLL+A LA I S
Sbjct: 574 QQYLCQPLLDAVLANIRS 591



 Score = 30.0 bits (66), Expect = 1.1
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 39  QEQQQQALQAQCQYSSHQCNETRLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRD 98
           Q+QQQQALQAQ         +          QP  + A+P Q +     Q    PP+ + 
Sbjct: 257 QQQQQQALQAQPPIQQPPMQQP---------QPPPSQALPQQLQQMHHTQHHQPPPQPQQ 307

Query: 99  PREPRHQKG-CGKTSLLDALTVRSQRCPLETLW-KPEIALEKRKHDLEVPTPRVPLAPLT 156
           P   ++Q       S    L  ++Q  P + L+ +P +   +    ++ P    P+ P  
Sbjct: 308 PPVAQNQPSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQP----PVQPQV 363

Query: 157 TQQ 159
            QQ
Sbjct: 364 QQQ 366


>gi|83700225 hydrogen/potassium-exchanging ATPase 12A [Homo sapiens]
          Length = 1039

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 24/37 (64%), Positives = 31/37 (83%)

Query: 1   MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPK 37
           +A+S    FFI+AVSL+Y +LDS+IFL GIIVANVP+
Sbjct: 313 VAVSIGILFFIIAVSLKYQVLDSIIFLIGIIVANVPE 349


>gi|237681109 Na+/K+ -ATPase alpha 1 subunit isoform c [Homo
           sapiens]
          Length = 1023

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query: 1   MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPK 37
           +A+     FFI+++ L+Y  L++VIFL GIIVANVP+
Sbjct: 298 VAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPE 334


>gi|237681111 Na+/K+ -ATPase alpha 1 subunit isoform d [Homo
           sapiens]
          Length = 992

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query: 1   MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPK 37
           +A+     FFI+++ L+Y  L++VIFL GIIVANVP+
Sbjct: 267 VAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPE 303


>gi|21361181 Na+/K+ -ATPase alpha 1 subunit isoform a [Homo sapiens]
          Length = 1023

 Score = 40.4 bits (93), Expect = 8e-04
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query: 1   MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPK 37
           +A+     FFI+++ L+Y  L++VIFL GIIVANVP+
Sbjct: 298 VAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPE 334


>gi|4502271 Na+/K+ -ATPase alpha 2 subunit proprotein [Homo sapiens]
          Length = 1020

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 18/37 (48%), Positives = 27/37 (72%)

Query: 1   MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPK 37
           +A+     FF++++ L Y  L++VIFL GIIVANVP+
Sbjct: 296 VAVFLGVSFFVLSLILGYSWLEAVIFLIGIIVANVPE 332


>gi|22748667 Na+/K+ -ATPase alpha 3 subunit [Homo sapiens]
          Length = 1013

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 1   MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPK 37
           +A+     FFI+++ L Y  L++VIFL GIIVANVP+
Sbjct: 288 VAVFLGVSFFILSLILGYTWLEAVIFLIGIIVANVPE 324


>gi|222352161 ATPase, class V, type 10D [Homo sapiens]
          Length = 1426

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 22/60 (36%), Positives = 28/60 (46%)

Query: 36  PKLQEQQQQALQAQCQYSSHQCNETRLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPE 95
           P  +E  Q     QC  SS  C ET   H  +GL  G+A ++PGQ  A      A +P E
Sbjct: 671 PVEEEVSQVCESPQCSSSSACCTETEKQHGDAGLLNGKAESLPGQPLACNLCYEAESPDE 730


>gi|55956910 meningioma  1 [Homo sapiens]
          Length = 1320

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 13/96 (13%)

Query: 33  ANVPKLQEQQQQALQAQCQYSSHQCNETRLTHE---PSGLQPGRAAAVPGQAKAAAQVQG 89
           A  P+ Q QQQQ  Q Q Q   H     R +     P GL+P   +  P         Q 
Sbjct: 290 AQPPQQQPQQQQ--QPQQQQQQHGVFFERFSGARKMPVGLEPSVGSRHP----LMQPPQQ 343

Query: 90  APAPPEQRDPREPRHQKGCGKTSLLDALTVRSQRCP 125
           AP PP+Q+ P++P  Q+      LL    VR   CP
Sbjct: 344 APPPPQQQPPQQPPQQQPPPPPGLL----VRQNSCP 375


>gi|153946397 Na+/K+ -ATPase alpha 4 subunit isoform 1 [Homo
           sapiens]
          Length = 1029

 Score = 36.6 bits (83), Expect = 0.012
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 1   MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPK 37
           +A+     FF +++ L Y  L+++IFL GIIVANVP+
Sbjct: 306 VAVFLGVTFFALSLLLGYGWLEAIIFLIGIIVANVPE 342


>gi|10863899 numb homolog (Drosophila)-like [Homo sapiens]
          Length = 609

 Score = 33.5 bits (75), Expect = 0.099
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 32  VANVPKLQEQQQQALQAQCQYSSHQCNETRLTHEPSGLQPGRAAAVPGQAKAAAQVQGAP 91
           VA   + Q+QQQQ  Q Q Q      +   +   P  LQP  A   P  A A AQV    
Sbjct: 423 VAKAQQQQQQQQQQQQQQQQQQQQAASVAPVPTMPPALQPFPAPVGPFDA-APAQVAVFL 481

Query: 92  APPEQRDPREPRH 104
            PP  + P  P +
Sbjct: 482 PPPHMQPPFVPAY 494


>gi|73476377 LBXCOR1 homolog [Homo sapiens]
          Length = 921

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 14/81 (17%)

Query: 74  AAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVRSQRCPLETLWKPE 133
           AAAV   A AAA   G+ AP E  D  EP  + G G            +RCP      P 
Sbjct: 470 AAAVAAAAAAAAAAAGSGAP-EPLDGAEPAKESGLG----------AEERCPSALSRGP- 517

Query: 134 IALEKRKHDLEVPTPRVPLAP 154
             L++   D  +P P  PL P
Sbjct: 518 --LDEDGTDEALPPPLAPLPP 536


>gi|21361151 transducin-like enhancer protein 2 isoform 1 [Homo
           sapiens]
          Length = 743

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 33/91 (36%), Positives = 38/91 (41%), Gaps = 20/91 (21%)

Query: 27  LTGIIVANVPKL-QEQQQQALQA------------------QCQYSSHQCNETRLTHEPS 67
           L+GI    +P L QE QQQ LQA                  Q Q  SH      LT  P+
Sbjct: 84  LSGICAQIIPFLTQEHQQQVLQAVERAKQVTVGELNSLIGQQLQPLSHHAPPVPLTPRPA 143

Query: 68  GLQPGRAAAVPGQAKA-AAQVQGAPAPPEQR 97
           GL  G A  +   + A AAQ Q A A  E R
Sbjct: 144 GLVGGSATGLLALSGALAAQAQLAAAVKEDR 174


>gi|21264353 SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily d, member 3 isoform 1
           [Homo sapiens]
          Length = 470

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 66  PSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGK 110
           P+G++P R  A P   ++ AQ QG P P      R  + +K   K
Sbjct: 49  PAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADK 93


>gi|51477704 SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily d, member 3 isoform 1
           [Homo sapiens]
          Length = 470

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 66  PSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGK 110
           P+G++P R  A P   ++ AQ QG P P      R  + +K   K
Sbjct: 49  PAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADK 93


>gi|51477702 SWI/SNF related, matrix associated, actin dependent
           regulator of chromatin, subfamily d, member 3 isoform 2
           [Homo sapiens]
          Length = 483

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 66  PSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGK 110
           P+G++P R  A P   ++ AQ QG P P      R  + +K   K
Sbjct: 62  PAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADK 106


>gi|6912230 adenosine deaminase, tRNA-specific 1 [Homo sapiens]
          Length = 502

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 15  SLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQ 51
           +L  H+L+  I+L+ +++   P  QE  Q+AL  +CQ
Sbjct: 314 ALLMHLLEEPIYLSAVVIGKCPYSQEAMQRALIGRCQ 350


>gi|221219048 transducin-like enhancer protein 2 isoform 2 [Homo
           sapiens]
          Length = 706

 Score = 32.7 bits (73), Expect = 0.17
 Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 21/92 (22%)

Query: 27  LTGIIVANVPKL-QEQQQQALQA-------------------QCQYSSHQCNETRLTHEP 66
           L+GI    +P L QE QQQ LQA                   Q Q  SH      LT  P
Sbjct: 97  LSGICAQIIPFLTQEHQQQVLQAVERAKQVTVGELNSLIGQQQLQPLSHHAPPVPLTPRP 156

Query: 67  SGLQPGRAAAVPGQAKA-AAQVQGAPAPPEQR 97
           +GL  G A  +   + A AAQ Q A A  E R
Sbjct: 157 AGLVGGSATGLLALSGALAAQAQLAAAVKEDR 188


>gi|239751461 PREDICTED: hypothetical protein XP_002347871 [Homo
           sapiens]
          Length = 559

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 33  ANVPKLQEQQQQALQAQCQYSSHQCNETRLTHEPSGLQPGRAAAVPGQ---AKAAAQVQG 89
           A  P+ +E+ + AL  +       C E      P   +P + AA P +    KA  ++  
Sbjct: 99  ARPPRAKEKHRAALSEE-----RSCREELGQQHPRHSRPRKTAASPEKPQTTKATGRMNS 153

Query: 90  APAPPEQRDPR-EPRHQKGCGKTSL 113
             APPE+R  R EP  + G G+ ++
Sbjct: 154 HLAPPEKRKGRPEPSTKSGGGRCAI 178


>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
          Length = 796

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 39  QEQQQQALQAQCQYSSHQCNETRLTHEPSGLQPGRAAAVPGQAK-----AAAQVQGAPAP 93
           Q+QQQQ  Q Q Q    Q  + +L H     +P   AA  G  +     AAA    A A 
Sbjct: 105 QQQQQQQQQQQQQQQQQQQQQQQLNHVDGSSKPAVLAAPSGLERYGLSAAAAAAAAAAAA 164

Query: 94  PEQR 97
            EQR
Sbjct: 165 VEQR 168


>gi|7657218 bromodomain-containing protein 4 isoform short [Homo
           sapiens]
          Length = 722

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 12/71 (16%)

Query: 65  EPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVRSQRC 124
           E S +   +A A P  A AA+     P PPE  +P +P+ Q     T+ L  L     R 
Sbjct: 22  ETSQMSTTQAQAQPQPANAAST---NPPPPETSNPNKPKRQ-----TNQLQYLL----RV 69

Query: 125 PLETLWKPEIA 135
            L+TLWK + A
Sbjct: 70  VLKTLWKHQFA 80


>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
           sapiens]
          Length = 1362

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 12/71 (16%)

Query: 65  EPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVRSQRC 124
           E S +   +A A P  A AA+     P PPE  +P +P+ Q     T+ L  L     R 
Sbjct: 22  ETSQMSTTQAQAQPQPANAAST---NPPPPETSNPNKPKRQ-----TNQLQYLL----RV 69

Query: 125 PLETLWKPEIA 135
            L+TLWK + A
Sbjct: 70  VLKTLWKHQFA 80


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 65  EPSGLQPGRA---AAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGK 110
           +PS  QPG     +  PG AK +AQ Q +PA P  +   +P  Q G GK
Sbjct: 518 KPSPQQPGSTKPPSQQPGSAKPSAQ-QPSPAKPSAQQSTKPVSQTGSGK 565



 Score = 28.9 bits (63), Expect = 2.4
 Identities = 25/90 (27%), Positives = 30/90 (33%), Gaps = 8/90 (8%)

Query: 65  EPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVRSQRC 124
           +P   QPG   + PG AK  AQ  G   P  Q        Q G  K  +    T +    
Sbjct: 313 KPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQ--------QPGTVKPPVQPPGTTKPPAQ 364

Query: 125 PLETLWKPEIALEKRKHDLEVPTPRVPLAP 154
           PL     P       K   E P P+    P
Sbjct: 365 PLGPAKPPAQQTGSEKPSSEQPGPKALAQP 394



 Score = 26.9 bits (58), Expect = 9.3
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 63  THEPSGLQPGRAAAV--PGQAKAAAQVQGAPAPPEQR 97
           + +PS  QPG  A    PG  K  AQ  G   PP Q+
Sbjct: 378 SEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQ 414


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 65  EPSGLQPGRA---AAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGK 110
           +PS  QPG     +  PG AK +AQ Q +PA P  +   +P  Q G GK
Sbjct: 518 KPSPQQPGSTKPPSQQPGSAKPSAQ-QPSPAKPSAQQSTKPVSQTGSGK 565



 Score = 28.9 bits (63), Expect = 2.4
 Identities = 25/90 (27%), Positives = 30/90 (33%), Gaps = 8/90 (8%)

Query: 65  EPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVRSQRC 124
           +P   QPG   + PG AK  AQ  G   P  Q        Q G  K  +    T +    
Sbjct: 313 KPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQ--------QPGTVKPPVQPPGTTKPPAQ 364

Query: 125 PLETLWKPEIALEKRKHDLEVPTPRVPLAP 154
           PL     P       K   E P P+    P
Sbjct: 365 PLGPAKPPAQQTGSEKPSSEQPGPKALAQP 394



 Score = 26.9 bits (58), Expect = 9.3
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 63  THEPSGLQPGRAAAV--PGQAKAAAQVQGAPAPPEQR 97
           + +PS  QPG  A    PG  K  AQ  G   PP Q+
Sbjct: 378 SEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQ 414


>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
          Length = 610

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 41  QQQQALQAQC-QYSSHQCNETRLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDP 99
           Q Q+  + QC +Y   +C    L+  P+ L+  +  A+ G+ ++ A +QG P PP    P
Sbjct: 175 QGQKGEKGQCGEYPHREC----LSSMPAALRSSQIIALKGE-QSQASIQGPPGPPGPPGP 229

Query: 100 REPRHQKG 107
             P    G
Sbjct: 230 SGPLGHPG 237


>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
          Length = 657

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 41  QQQQALQAQC-QYSSHQCNETRLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDP 99
           Q Q+  + QC +Y   +C    L+  P+ L+  +  A+ G+ ++ A +QG P PP    P
Sbjct: 166 QGQKGEKGQCGEYPHREC----LSSMPAALRSSQIIALKGE-QSQASIQGPPGPPGPPGP 220

Query: 100 REPRHQKG 107
             P    G
Sbjct: 221 SGPLGHPG 228


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,531,938
Number of Sequences: 37866
Number of extensions: 370063
Number of successful extensions: 2878
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 2680
Number of HSP's gapped (non-prelim): 287
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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