Guide to the Human Genome
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Name: LOC100287712 Sequence: fasta or formatted (177aa) NCBI GI: 239741779
Description:

PREDICTED: hypothetical protein XP_002342290

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         19           3
 C cysteine            2.8          5           1
 D aspartate           2.3          4           1
 E glutamate           6.2         11           1
 F phenylalanine       2.3          4           3
 G glycine             4.5          8           1
 H histidine           3.4          6           1
 I isoleucine          4.5          8           2
 K lysine              4.0          7           1
 L leucine            11.3         20           2
 M methionine          1.1          2           1
 N asparagine          1.1          2           1
 P proline             9.0         16           2
 Q glutamine          10.7         19           4
 R arginine            6.2         11           1
 S serine              6.2         11           2
 T threonine           6.2         11           2
 V valine              5.1          9           1
 W tryptophan          1.1          2           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342290 
LOC100130469          1.000   PREDICTED: similar to hCG1646178 
LOC100130469          1.000   PREDICTED: similar to hCG1646178 
MED15                 0.141   mediator complex subunit 15 isoform a 
MED15                 0.141   mediator complex subunit 15 isoform b 
ATP12A                0.081   hydrogen/potassium-exchanging ATPase 12A 
ATP1A1                0.045   Na+/K+ -ATPase alpha 1 subunit isoform c 
ATP1A1                0.045   Na+/K+ -ATPase alpha 1 subunit isoform d 
ATP1A1                0.045   Na+/K+ -ATPase alpha 1 subunit isoform a 
ATP1A2                0.042   Na+/K+ -ATPase alpha 2 subunit proprotein 
ATP1A3                0.042   Na+/K+ -ATPase alpha 3 subunit 
ATP10D                0.042   ATPase, class V, type 10D 
MN1                   0.036   meningioma  1 
ATP1A4                0.036   Na+/K+ -ATPase alpha 4 subunit isoform 1 
NUMBL                 0.024   numb homolog (Drosophila)-like 
LBXCOR1               0.024   LBXCOR1 homolog 
TLE2                  0.024   transducin-like enhancer protein 2 isoform 1 
SMARCD3               0.024   SWI/SNF related, matrix associated, actin dependent ...
SMARCD3               0.024   SWI/SNF related, matrix associated, actin dependent ...
SMARCD3               0.024   SWI/SNF related, matrix associated, actin dependent ...
ADAT1                 0.024   adenosine deaminase, tRNA-specific 1 
TLE2                  0.024   transducin-like enhancer protein 2 isoform 2 
LOC100289922          0.021   PREDICTED: hypothetical protein XP_002347871 
C14orf4               0.021   chromosome 14 open reading frame 4 
BRD4                  0.021   bromodomain-containing protein 4 isoform short 
BRD4                  0.021   bromodomain-containing protein 4 isoform long 
PCLO                  0.021   piccolo isoform 2 
PCLO                  0.021   piccolo isoform 1 
COL13A1               0.021   alpha 1 type XIII collagen isoform 19 
COL13A1               0.021   alpha 1 type XIII collagen isoform 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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