Guide to the Human Genome
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Name: LOC400987 Sequence: fasta or formatted (163aa) NCBI GI: 169164590
Description:

PREDICTED: similar to UNCoordinated family member (unc-44)

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         11           1
 C cysteine            3.7          6           1
 D aspartate           7.4         12           2
 E glutamate           8.0         13           2
 F phenylalanine       3.1          5           1
 G glycine             3.7          6           1
 H histidine           3.1          5           1
 I isoleucine          4.3          7           1
 K lysine              5.5          9           1
 L leucine            13.5         22           3
 M methionine          1.8          3           1
 N asparagine          3.7          6           1
 P proline             4.9          8           1
 Q glutamine           3.1          5           1
 R arginine            9.2         15           2
 S serine              3.1          5           1
 T threonine           5.5          9           1
 V valine              4.9          8           1
 W tryptophan          0.6          1           1
 Y tyrosine            4.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to UNCoordinated family member (... 
ANKRD36               0.831   PREDICTED: ankyrin repeat domain 36 
LOC100134365          0.537   PREDICTED: similar to ankyrin repeat domain 36 [Hom...
LOC652726             0.524   PREDICTED: similar to ankyrin repeat domain 36 [Hom...
ANKRD18B              0.415   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.412   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.412   PREDICTED: ankyrin repeat domain 18B 
ANKRD26               0.412   ankyrin repeat domain 26 
ANKRD18A              0.406   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.406   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.406   PREDICTED: ankyrin repeat domain 18A 
ANKRD62               0.399   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.399   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.399   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
ANKRD20A3             0.393   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.393   ankyrin repeat domain 20 family, member A2 
ANKRD20A1             0.390   ankyrin repeat domain 20 family, member A1 
ANKRD20A4             0.390   ankyrin repeat domain 20 family, member A4 
POTEA                 0.377   POTE ankyrin domain family, member A isoform 1 [Homo...
POTEA                 0.377   POTE ankyrin domain family, member A isoform 2 [Homo...
POTEE                 0.367   protein expressed in prostate, ovary, testis, and p...
ANKRD20A5             0.367   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.367   PREDICTED: ankyrin repeat domain 20 family, member ...
POTEG                 0.367   POTE ankyrin domain family, member G 
POTEF                 0.367   prostate, ovary, testis expressed protein on chromo...
POTEB                 0.364   protein expressed in prostate, ovary, testis, and pl...
POTED                 0.364   pote protein 
LOC100287399          0.364   PREDICTED: hypothetical protein XP_002343353 
LOC100288966          0.364   PREDICTED: hypothetical protein XP_002343915 isofor...
LOC100288966          0.364   PREDICTED: hypothetical protein XP_002343914 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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