Guide to the Human Genome
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Name: LOC652726 Sequence: fasta or formatted (99aa) NCBI GI: 169218148
Description:

PREDICTED: similar to ankyrin repeat domain 36

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1          9           1
 C cysteine            5.1          5           1
 D aspartate           4.0          4           1
 E glutamate           8.1          8           2
 F phenylalanine       2.0          2           2
 G glycine             4.0          4           1
 H histidine           4.0          4           1
 I isoleucine          4.0          4           1
 K lysine              3.0          3           1
 L leucine            14.1         14           3
 M methionine          3.0          3           1
 N asparagine          6.1          6           1
 P proline             3.0          3           1
 Q glutamine           4.0          4           1
 R arginine            6.1          6           2
 S serine              4.0          4           1
 T threonine           8.1          8           1
 V valine              5.1          5           1
 W tryptophan          1.0          1           1
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ankyrin repeat domain 36 [Hom... 
ANKRD36               0.956   PREDICTED: ankyrin repeat domain 36 
LOC100134365          0.939   PREDICTED: similar to ankyrin repeat domain 36 [Hom...
LOC400987             0.906   PREDICTED: similar to UNCoordinated family member (...
ANKRD20A3             0.597   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.597   ankyrin repeat domain 20 family, member A2 
ANKRD20A4             0.597   ankyrin repeat domain 20 family, member A4 
ANKRD20A1             0.586   ankyrin repeat domain 20 family, member A1 
ANKRD18B              0.575   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.575   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.575   PREDICTED: ankyrin repeat domain 18B 
ANKRD20A5             0.569   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.569   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD26               0.569   ankyrin repeat domain 26 
ANKRD18A              0.552   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.552   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.552   PREDICTED: ankyrin repeat domain 18A 
ANKRD62               0.503   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.503   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.503   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
FLJ46358              0.497   PREDICTED: FLJ46358 protein 
FLJ46358              0.497   PREDICTED: FLJ46358 protein 
FLJ46358              0.497   PREDICTED: hypothetical protein LOC400110 
POTEA                 0.481   POTE ankyrin domain family, member A isoform 1 [Homo...
POTEA                 0.481   POTE ankyrin domain family, member A isoform 2 [Homo...
POTEG                 0.475   POTE ankyrin domain family, member G 
ANKRD30A              0.470   ankyrin repeat domain 30A 
P704P                 0.464   prostate-specific P704P 
POTEE                 0.464   protein expressed in prostate, ovary, testis, and p...
POTEH                 0.464   ANKRD26-like family C, member 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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