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Search of human proteins with 169164317
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169164317 PREDICTED: similar to hCG1646178 [Homo sapiens]
(177 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169164317 PREDICTED: similar to hCG1646178 [Homo sapiens] 359 e-100
gi|169164740 PREDICTED: similar to hCG1646178 [Homo sapiens] 359 e-100
gi|239741779 PREDICTED: hypothetical protein XP_002342290 [Homo ... 359 e-100
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 72 2e-13
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 72 2e-13
gi|83700225 hydrogen/potassium-exchanging ATPase 12A [Homo sapiens] 52 2e-07
gi|237681109 Na+/K+ -ATPase alpha 1 subunit isoform c [Homo sapi... 40 8e-04
gi|237681111 Na+/K+ -ATPase alpha 1 subunit isoform d [Homo sapi... 40 8e-04
gi|21361181 Na+/K+ -ATPase alpha 1 subunit isoform a [Homo sapiens] 40 8e-04
gi|4502271 Na+/K+ -ATPase alpha 2 subunit proprotein [Homo sapiens] 39 0.002
gi|22748667 Na+/K+ -ATPase alpha 3 subunit [Homo sapiens] 39 0.002
gi|222352161 ATPase, class V, type 10D [Homo sapiens] 39 0.003
gi|55956910 meningioma 1 [Homo sapiens] 37 0.012
gi|153946397 Na+/K+ -ATPase alpha 4 subunit isoform 1 [Homo sapi... 37 0.012
gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] 33 0.099
gi|73476377 LBXCOR1 homolog [Homo sapiens] 33 0.13
gi|21361151 transducin-like enhancer protein 2 isoform 1 [Homo s... 33 0.13
gi|21264353 SWI/SNF related, matrix associated, actin dependent ... 33 0.13
gi|51477704 SWI/SNF related, matrix associated, actin dependent ... 33 0.13
gi|51477702 SWI/SNF related, matrix associated, actin dependent ... 33 0.13
gi|6912230 adenosine deaminase, tRNA-specific 1 [Homo sapiens] 33 0.13
gi|221219048 transducin-like enhancer protein 2 isoform 2 [Homo ... 33 0.17
gi|239751461 PREDICTED: hypothetical protein XP_002347871 [Homo ... 32 0.22
gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens] 32 0.22
gi|7657218 bromodomain-containing protein 4 isoform short [Homo ... 32 0.29
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 32 0.29
gi|150170670 piccolo isoform 2 [Homo sapiens] 32 0.29
gi|150378539 piccolo isoform 1 [Homo sapiens] 32 0.29
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 32 0.38
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 32 0.38
>gi|169164317 PREDICTED: similar to hCG1646178 [Homo sapiens]
Length = 177
Score = 359 bits (922), Expect = e-100
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET 60
MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET
Sbjct: 1 MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET 60
Query: 61 RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR 120
RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR
Sbjct: 61 RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR 120
Query: 121 SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES 177
SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES
Sbjct: 121 SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES 177
>gi|169164740 PREDICTED: similar to hCG1646178 [Homo sapiens]
Length = 177
Score = 359 bits (922), Expect = e-100
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET 60
MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET
Sbjct: 1 MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET 60
Query: 61 RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR 120
RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR
Sbjct: 61 RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR 120
Query: 121 SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES 177
SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES
Sbjct: 121 SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES 177
>gi|239741779 PREDICTED: hypothetical protein XP_002342290 [Homo
sapiens]
Length = 177
Score = 359 bits (922), Expect = e-100
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET 60
MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET
Sbjct: 1 MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQYSSHQCNET 60
Query: 61 RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR 120
RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR
Sbjct: 61 RLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVR 120
Query: 121 SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES 177
SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES
Sbjct: 121 SQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTTQQHLRWPLLEAGLARICSES 177
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 72.4 bits (176), Expect = 2e-13
Identities = 43/78 (55%), Positives = 50/78 (64%)
Query: 98 DPREPRHQKGCGKTSLLDALTVRSQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTT 157
D E R + SLLD LT S+RCPL+TL K EIALEK K+D+ VPTP P P T
Sbjct: 554 DKNEDRKKDLSKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTK 613
Query: 158 QQHLRWPLLEAGLARICS 175
QQ+L PLL+A LA I S
Sbjct: 614 QQYLCQPLLDAVLANIRS 631
Score = 30.0 bits (66), Expect = 1.1
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 15/123 (12%)
Query: 39 QEQQQQALQAQCQYSSHQCNETRLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRD 98
Q+QQQQALQAQ + QP + A+P Q + Q PP+ +
Sbjct: 257 QQQQQQALQAQPPIQQPPMQQP---------QPPPSQALPQQLQQMHHTQHHQPPPQPQQ 307
Query: 99 PREPRHQKG-CGKTSLLDALTVRSQRCPLETLW-KPEIALEKRKHDLEVPTPRVPLAPLT 156
P ++Q S L ++Q P + L+ +P + + ++ P P+ P
Sbjct: 308 PPVAQNQPSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQP----PVQPQV 363
Query: 157 TQQ 159
QQ
Sbjct: 364 QQQ 366
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 72.4 bits (176), Expect = 2e-13
Identities = 43/78 (55%), Positives = 50/78 (64%)
Query: 98 DPREPRHQKGCGKTSLLDALTVRSQRCPLETLWKPEIALEKRKHDLEVPTPRVPLAPLTT 157
D E R + SLLD LT S+RCPL+TL K EIALEK K+D+ VPTP P P T
Sbjct: 514 DKNEDRKKDLSKMKSLLDILTDPSKRCPLKTLQKCEIALEKLKNDMAVPTPPPPPVPPTK 573
Query: 158 QQHLRWPLLEAGLARICS 175
QQ+L PLL+A LA I S
Sbjct: 574 QQYLCQPLLDAVLANIRS 591
Score = 30.0 bits (66), Expect = 1.1
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 15/123 (12%)
Query: 39 QEQQQQALQAQCQYSSHQCNETRLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRD 98
Q+QQQQALQAQ + QP + A+P Q + Q PP+ +
Sbjct: 257 QQQQQQALQAQPPIQQPPMQQP---------QPPPSQALPQQLQQMHHTQHHQPPPQPQQ 307
Query: 99 PREPRHQKG-CGKTSLLDALTVRSQRCPLETLW-KPEIALEKRKHDLEVPTPRVPLAPLT 156
P ++Q S L ++Q P + L+ +P + + ++ P P+ P
Sbjct: 308 PPVAQNQPSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQP----PVQPQV 363
Query: 157 TQQ 159
QQ
Sbjct: 364 QQQ 366
>gi|83700225 hydrogen/potassium-exchanging ATPase 12A [Homo sapiens]
Length = 1039
Score = 52.4 bits (124), Expect = 2e-07
Identities = 24/37 (64%), Positives = 31/37 (83%)
Query: 1 MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPK 37
+A+S FFI+AVSL+Y +LDS+IFL GIIVANVP+
Sbjct: 313 VAVSIGILFFIIAVSLKYQVLDSIIFLIGIIVANVPE 349
>gi|237681109 Na+/K+ -ATPase alpha 1 subunit isoform c [Homo
sapiens]
Length = 1023
Score = 40.4 bits (93), Expect = 8e-04
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 1 MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPK 37
+A+ FFI+++ L+Y L++VIFL GIIVANVP+
Sbjct: 298 VAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPE 334
>gi|237681111 Na+/K+ -ATPase alpha 1 subunit isoform d [Homo
sapiens]
Length = 992
Score = 40.4 bits (93), Expect = 8e-04
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 1 MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPK 37
+A+ FFI+++ L+Y L++VIFL GIIVANVP+
Sbjct: 267 VAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPE 303
>gi|21361181 Na+/K+ -ATPase alpha 1 subunit isoform a [Homo sapiens]
Length = 1023
Score = 40.4 bits (93), Expect = 8e-04
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 1 MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPK 37
+A+ FFI+++ L+Y L++VIFL GIIVANVP+
Sbjct: 298 VAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPE 334
>gi|4502271 Na+/K+ -ATPase alpha 2 subunit proprotein [Homo sapiens]
Length = 1020
Score = 38.9 bits (89), Expect = 0.002
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 1 MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPK 37
+A+ FF++++ L Y L++VIFL GIIVANVP+
Sbjct: 296 VAVFLGVSFFVLSLILGYSWLEAVIFLIGIIVANVPE 332
>gi|22748667 Na+/K+ -ATPase alpha 3 subunit [Homo sapiens]
Length = 1013
Score = 38.9 bits (89), Expect = 0.002
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 1 MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPK 37
+A+ FFI+++ L Y L++VIFL GIIVANVP+
Sbjct: 288 VAVFLGVSFFILSLILGYTWLEAVIFLIGIIVANVPE 324
>gi|222352161 ATPase, class V, type 10D [Homo sapiens]
Length = 1426
Score = 38.5 bits (88), Expect = 0.003
Identities = 22/60 (36%), Positives = 28/60 (46%)
Query: 36 PKLQEQQQQALQAQCQYSSHQCNETRLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPE 95
P +E Q QC SS C ET H +GL G+A ++PGQ A A +P E
Sbjct: 671 PVEEEVSQVCESPQCSSSSACCTETEKQHGDAGLLNGKAESLPGQPLACNLCYEAESPDE 730
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 36.6 bits (83), Expect = 0.012
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Query: 33 ANVPKLQEQQQQALQAQCQYSSHQCNETRLTHE---PSGLQPGRAAAVPGQAKAAAQVQG 89
A P+ Q QQQQ Q Q Q H R + P GL+P + P Q
Sbjct: 290 AQPPQQQPQQQQ--QPQQQQQQHGVFFERFSGARKMPVGLEPSVGSRHP----LMQPPQQ 343
Query: 90 APAPPEQRDPREPRHQKGCGKTSLLDALTVRSQRCP 125
AP PP+Q+ P++P Q+ LL VR CP
Sbjct: 344 APPPPQQQPPQQPPQQQPPPPPGLL----VRQNSCP 375
>gi|153946397 Na+/K+ -ATPase alpha 4 subunit isoform 1 [Homo
sapiens]
Length = 1029
Score = 36.6 bits (83), Expect = 0.012
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 1 MAISTSTFFFIMAVSLQYHILDSVIFLTGIIVANVPK 37
+A+ FF +++ L Y L+++IFL GIIVANVP+
Sbjct: 306 VAVFLGVTFFALSLLLGYGWLEAIIFLIGIIVANVPE 342
>gi|10863899 numb homolog (Drosophila)-like [Homo sapiens]
Length = 609
Score = 33.5 bits (75), Expect = 0.099
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 32 VANVPKLQEQQQQALQAQCQYSSHQCNETRLTHEPSGLQPGRAAAVPGQAKAAAQVQGAP 91
VA + Q+QQQQ Q Q Q + + P LQP A P A A AQV
Sbjct: 423 VAKAQQQQQQQQQQQQQQQQQQQQAASVAPVPTMPPALQPFPAPVGPFDA-APAQVAVFL 481
Query: 92 APPEQRDPREPRH 104
PP + P P +
Sbjct: 482 PPPHMQPPFVPAY 494
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 33.1 bits (74), Expect = 0.13
Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 74 AAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVRSQRCPLETLWKPE 133
AAAV A AAA G+ AP E D EP + G G +RCP P
Sbjct: 470 AAAVAAAAAAAAAAAGSGAP-EPLDGAEPAKESGLG----------AEERCPSALSRGP- 517
Query: 134 IALEKRKHDLEVPTPRVPLAP 154
L++ D +P P PL P
Sbjct: 518 --LDEDGTDEALPPPLAPLPP 536
>gi|21361151 transducin-like enhancer protein 2 isoform 1 [Homo
sapiens]
Length = 743
Score = 33.1 bits (74), Expect = 0.13
Identities = 33/91 (36%), Positives = 38/91 (41%), Gaps = 20/91 (21%)
Query: 27 LTGIIVANVPKL-QEQQQQALQA------------------QCQYSSHQCNETRLTHEPS 67
L+GI +P L QE QQQ LQA Q Q SH LT P+
Sbjct: 84 LSGICAQIIPFLTQEHQQQVLQAVERAKQVTVGELNSLIGQQLQPLSHHAPPVPLTPRPA 143
Query: 68 GLQPGRAAAVPGQAKA-AAQVQGAPAPPEQR 97
GL G A + + A AAQ Q A A E R
Sbjct: 144 GLVGGSATGLLALSGALAAQAQLAAAVKEDR 174
>gi|21264353 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1
[Homo sapiens]
Length = 470
Score = 33.1 bits (74), Expect = 0.13
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 66 PSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGK 110
P+G++P R A P ++ AQ QG P P R + +K K
Sbjct: 49 PAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADK 93
>gi|51477704 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1
[Homo sapiens]
Length = 470
Score = 33.1 bits (74), Expect = 0.13
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 66 PSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGK 110
P+G++P R A P ++ AQ QG P P R + +K K
Sbjct: 49 PAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADK 93
>gi|51477702 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 2
[Homo sapiens]
Length = 483
Score = 33.1 bits (74), Expect = 0.13
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 66 PSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGK 110
P+G++P R A P ++ AQ QG P P R + +K K
Sbjct: 62 PAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADK 106
>gi|6912230 adenosine deaminase, tRNA-specific 1 [Homo sapiens]
Length = 502
Score = 33.1 bits (74), Expect = 0.13
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 15 SLQYHILDSVIFLTGIIVANVPKLQEQQQQALQAQCQ 51
+L H+L+ I+L+ +++ P QE Q+AL +CQ
Sbjct: 314 ALLMHLLEEPIYLSAVVIGKCPYSQEAMQRALIGRCQ 350
>gi|221219048 transducin-like enhancer protein 2 isoform 2 [Homo
sapiens]
Length = 706
Score = 32.7 bits (73), Expect = 0.17
Identities = 33/92 (35%), Positives = 38/92 (41%), Gaps = 21/92 (22%)
Query: 27 LTGIIVANVPKL-QEQQQQALQA-------------------QCQYSSHQCNETRLTHEP 66
L+GI +P L QE QQQ LQA Q Q SH LT P
Sbjct: 97 LSGICAQIIPFLTQEHQQQVLQAVERAKQVTVGELNSLIGQQQLQPLSHHAPPVPLTPRP 156
Query: 67 SGLQPGRAAAVPGQAKA-AAQVQGAPAPPEQR 97
+GL G A + + A AAQ Q A A E R
Sbjct: 157 AGLVGGSATGLLALSGALAAQAQLAAAVKEDR 188
>gi|239751461 PREDICTED: hypothetical protein XP_002347871 [Homo
sapiens]
Length = 559
Score = 32.3 bits (72), Expect = 0.22
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 33 ANVPKLQEQQQQALQAQCQYSSHQCNETRLTHEPSGLQPGRAAAVPGQ---AKAAAQVQG 89
A P+ +E+ + AL + C E P +P + AA P + KA ++
Sbjct: 99 ARPPRAKEKHRAALSEE-----RSCREELGQQHPRHSRPRKTAASPEKPQTTKATGRMNS 153
Query: 90 APAPPEQRDPR-EPRHQKGCGKTSL 113
APPE+R R EP + G G+ ++
Sbjct: 154 HLAPPEKRKGRPEPSTKSGGGRCAI 178
>gi|33457336 chromosome 14 open reading frame 4 [Homo sapiens]
Length = 796
Score = 32.3 bits (72), Expect = 0.22
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 39 QEQQQQALQAQCQYSSHQCNETRLTHEPSGLQPGRAAAVPGQAK-----AAAQVQGAPAP 93
Q+QQQQ Q Q Q Q + +L H +P AA G + AAA A A
Sbjct: 105 QQQQQQQQQQQQQQQQQQQQQQQLNHVDGSSKPAVLAAPSGLERYGLSAAAAAAAAAAAA 164
Query: 94 PEQR 97
EQR
Sbjct: 165 VEQR 168
>gi|7657218 bromodomain-containing protein 4 isoform short [Homo
sapiens]
Length = 722
Score = 32.0 bits (71), Expect = 0.29
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 65 EPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVRSQRC 124
E S + +A A P A AA+ P PPE +P +P+ Q T+ L L R
Sbjct: 22 ETSQMSTTQAQAQPQPANAAST---NPPPPETSNPNKPKRQ-----TNQLQYLL----RV 69
Query: 125 PLETLWKPEIA 135
L+TLWK + A
Sbjct: 70 VLKTLWKHQFA 80
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 32.0 bits (71), Expect = 0.29
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 12/71 (16%)
Query: 65 EPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVRSQRC 124
E S + +A A P A AA+ P PPE +P +P+ Q T+ L L R
Sbjct: 22 ETSQMSTTQAQAQPQPANAAST---NPPPPETSNPNKPKRQ-----TNQLQYLL----RV 69
Query: 125 PLETLWKPEIA 135
L+TLWK + A
Sbjct: 70 VLKTLWKHQFA 80
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 32.0 bits (71), Expect = 0.29
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 65 EPSGLQPGRA---AAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGK 110
+PS QPG + PG AK +AQ Q +PA P + +P Q G GK
Sbjct: 518 KPSPQQPGSTKPPSQQPGSAKPSAQ-QPSPAKPSAQQSTKPVSQTGSGK 565
Score = 28.9 bits (63), Expect = 2.4
Identities = 25/90 (27%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 65 EPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVRSQRC 124
+P QPG + PG AK AQ G P Q Q G K + T +
Sbjct: 313 KPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQ--------QPGTVKPPVQPPGTTKPPAQ 364
Query: 125 PLETLWKPEIALEKRKHDLEVPTPRVPLAP 154
PL P K E P P+ P
Sbjct: 365 PLGPAKPPAQQTGSEKPSSEQPGPKALAQP 394
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 63 THEPSGLQPGRAAAV--PGQAKAAAQVQGAPAPPEQR 97
+ +PS QPG A PG K AQ G PP Q+
Sbjct: 378 SEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQ 414
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 32.0 bits (71), Expect = 0.29
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 65 EPSGLQPGRA---AAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGK 110
+PS QPG + PG AK +AQ Q +PA P + +P Q G GK
Sbjct: 518 KPSPQQPGSTKPPSQQPGSAKPSAQ-QPSPAKPSAQQSTKPVSQTGSGK 565
Score = 28.9 bits (63), Expect = 2.4
Identities = 25/90 (27%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 65 EPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDPREPRHQKGCGKTSLLDALTVRSQRC 124
+P QPG + PG AK AQ G P Q Q G K + T +
Sbjct: 313 KPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQ--------QPGTVKPPVQPPGTTKPPAQ 364
Query: 125 PLETLWKPEIALEKRKHDLEVPTPRVPLAP 154
PL P K E P P+ P
Sbjct: 365 PLGPAKPPAQQTGSEKPSSEQPGPKALAQP 394
Score = 26.9 bits (58), Expect = 9.3
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 63 THEPSGLQPGRAAAV--PGQAKAAAQVQGAPAPPEQR 97
+ +PS QPG A PG K AQ G PP Q+
Sbjct: 378 SEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQ 414
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 31.6 bits (70), Expect = 0.38
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 41 QQQQALQAQC-QYSSHQCNETRLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDP 99
Q Q+ + QC +Y +C L+ P+ L+ + A+ G+ ++ A +QG P PP P
Sbjct: 175 QGQKGEKGQCGEYPHREC----LSSMPAALRSSQIIALKGE-QSQASIQGPPGPPGPPGP 229
Query: 100 REPRHQKG 107
P G
Sbjct: 230 SGPLGHPG 237
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 31.6 bits (70), Expect = 0.38
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 41 QQQQALQAQC-QYSSHQCNETRLTHEPSGLQPGRAAAVPGQAKAAAQVQGAPAPPEQRDP 99
Q Q+ + QC +Y +C L+ P+ L+ + A+ G+ ++ A +QG P PP P
Sbjct: 166 QGQKGEKGQCGEYPHREC----LSSMPAALRSSQIIALKGE-QSQASIQGPPGPPGPPGP 220
Query: 100 REPRHQKG 107
P G
Sbjct: 221 SGPLGHPG 228
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.131 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,531,938
Number of Sequences: 37866
Number of extensions: 370063
Number of successful extensions: 2878
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 2680
Number of HSP's gapped (non-prelim): 287
length of query: 177
length of database: 18,247,518
effective HSP length: 95
effective length of query: 82
effective length of database: 14,650,248
effective search space: 1201320336
effective search space used: 1201320336
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.