Guide to the Human Genome
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Name: LOC339742 Sequence: fasta or formatted (351aa) NCBI GI: 169164753
Description:

PREDICTED: hypothetical protein LOC339742

Not currently referenced in the text

Other entries for this name:
alt prot {245aa} PREDICTED: hypothetical protein
alt prot {292aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         23           5
 C cysteine            3.1         11           1
 D aspartate           4.8         17           1
 E glutamate           8.0         28           2
 F phenylalanine       4.3         15           1
 G glycine             6.0         21           1
 H histidine           3.4         12           2
 I isoleucine          5.7         20           2
 K lysine              5.1         18           1
 L leucine             9.1         32           2
 M methionine          2.3          8           1
 N asparagine          5.4         19           2
 P proline             4.3         15           2
 Q glutamine           6.6         23           1
 R arginine            4.8         17           1
 S serine              7.7         27           2
 T threonine           3.7         13           1
 V valine              4.6         16           2
 W tryptophan          2.6          9           1
 Y tyrosine            2.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC339742 
ZNF806                0.653   PREDICTED: zinc finger protein 806 
ZNF806                0.637   PREDICTED: zinc finger protein 806 
ZNF285A               0.582   zinc finger protein 285 
ZNF806                0.555   PREDICTED: zinc finger protein 806 
ZNF233                0.170   zinc finger protein 233 
ZNF235                0.149   zinc finger protein 93 homolog 
ZNF226                0.140   zinc finger protein 226 isoform a 
ZNF226                0.140   zinc finger protein 226 isoform a 
ZNF45                 0.129   zinc finger protein 45 
ZNF227                0.125   zinc finger protein 227 
ZFP112                0.123   zinc finger protein 228 isoform 1 
ZFP112                0.110   zinc finger protein 228 isoform 2 
ZNF221                0.110   zinc finger protein 221 
ZNF224                0.109   zinc finger protein 224 
ZNF229                0.106   zinc finger protein 229 
ZNF155                0.105   zinc finger protein 155 
ZNF155                0.105   zinc finger protein 155 
ZNF230                0.105   zinc finger protein 230 
ZNF234                0.099   zinc finger protein 234 
ZNF234                0.099   zinc finger protein 234 
ZNF222                0.096   zinc finger protein 222 isoform 1 
ZNF222                0.091   zinc finger protein 222 isoform 2 
ZNF225                0.091   zinc finger protein 225 
ZNF284                0.089   zinc finger protein 284 
ZNF480                0.076   zinc finger protein 480 
ZNF223                0.076   zinc finger protein 223 
ZNF642                0.074   zinc finger protein 642 
ZNF772                0.067   zinc finger protein 772 isoform 2 
ZNF713                0.065   zinc finger protein 713 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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