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Search of human proteins with 169161539
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169161539 PREDICTED: hypothetical protein [Homo sapiens]
(107 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169161772 PREDICTED: hypothetical protein [Homo sapiens] 223 3e-59
gi|169161539 PREDICTED: hypothetical protein [Homo sapiens] 223 3e-59
gi|169162816 PREDICTED: hypothetical protein [Homo sapiens] 223 3e-59
gi|169211906 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|169211049 PREDICTED: hypothetical protein [Homo sapiens] 35 0.017
gi|112363080 microtubule associated serine/threonine kinase 2 [H... 34 0.022
gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo sa... 34 0.022
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 33 0.038
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 33 0.038
gi|23111007 hypothetical protein LOC79018 [Homo sapiens] 33 0.038
gi|155030230 sorbin and SH3 domain containing 3 isoform 1 [Homo ... 33 0.050
gi|65301112 sorbin and SH3 domain containing 3 isoform 2 [Homo s... 33 0.050
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens] 33 0.065
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens] 32 0.14
gi|224809412 myocyte enhancer factor 2B isoform a [Homo sapiens] 32 0.14
gi|30089980 chordin [Homo sapiens] 31 0.19
gi|239746344 PREDICTED: hypothetical protein XP_002343734 [Homo ... 31 0.19
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 31 0.19
gi|169166960 PREDICTED: hypothetical protein [Homo sapiens] 31 0.25
gi|169166769 PREDICTED: hypothetical protein [Homo sapiens] 31 0.25
gi|169166416 PREDICTED: hypothetical protein [Homo sapiens] 31 0.25
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 31 0.25
gi|31442420 shroom family member 1 [Homo sapiens] 31 0.25
gi|34878787 ring finger protein 25 [Homo sapiens] 31 0.25
gi|118402590 myosin XV [Homo sapiens] 30 0.32
gi|148612825 Rap GTPase interactor [Homo sapiens] 30 0.32
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 30 0.32
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 30 0.42
gi|239757333 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|239751837 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
>gi|169161772 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 223 bits (567), Expect = 3e-59
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS 60
MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS
Sbjct: 1 MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS 60
Query: 61 PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK
Sbjct: 61 PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
>gi|169161539 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 223 bits (567), Expect = 3e-59
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS 60
MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS
Sbjct: 1 MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS 60
Query: 61 PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK
Sbjct: 61 PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
>gi|169162816 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 223 bits (567), Expect = 3e-59
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS 60
MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS
Sbjct: 1 MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS 60
Query: 61 PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK
Sbjct: 61 PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
>gi|169211906 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 20/81 (24%)
Query: 18 RPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSP--------------------TRVS 57
RP+R PT R Q+P CSL A L A+H P P T
Sbjct: 105 RPARHRPTWPRRAEPQVPEECSLPAGVLPAQHGPEPRPRGLQPAAHQLPGERGRGSTAAQ 164
Query: 58 IPSPRSENRQRLSSERKKRLH 78
P +E+R+ + R+ +LH
Sbjct: 165 HPRRNTESREAQAPPRRAQLH 185
>gi|169211049 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 34.7 bits (78), Expect = 0.017
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 20/81 (24%)
Query: 18 RPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSP--------------------TRVS 57
RP+R PT R Q+P CSL A L A+H P P T
Sbjct: 105 RPARHRPTWPRRAEPQVPEECSLPAGVLPAQHGPEPRPRGLQPAAHQLPGERGRGSTAAQ 164
Query: 58 IPSPRSENRQRLSSERKKRLH 78
P +E+R+ + R+ +LH
Sbjct: 165 HPRRNTESREAQAPPRRAQLH 185
>gi|112363080 microtubule associated serine/threonine kinase 2 [Homo
sapiens]
Length = 1798
Score = 34.3 bits (77), Expect = 0.022
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 19 PSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRLH 78
PS PH +G P+ + S S P L P IP Q L ++ L
Sbjct: 1576 PSGPHRRLGSPQAIEEAASSSSAGPNLGQSGATDP----IPPEGCWKAQHLHTQALTALS 1631
Query: 79 LSVPGAGPTQEADPPWPLELSLGCLSVW 106
S G PT PP + G LS+W
Sbjct: 1632 PSTSGLTPTSSCSPP---SSTSGKLSMW 1656
>gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo
sapiens]
Length = 685
Score = 34.3 bits (77), Expect = 0.022
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 2 RRGERALKPRARAYIGRPS--RPHPTV-----GRPRGAQLPGSCSLLAPALSARHLPSPT 54
R + A++ +A+ + PS RP P V + G + PGS S AP + + PT
Sbjct: 331 RTQKSAVEHKAKKSLSHPSHSRPGPMVTPHNKAKSPGVRQPGSSSSSAPGQPSTGVARPT 390
Query: 55 RVSIPSPRSENRQRLSSERKKRLHLSVPGA-GPTQEADP 92
S P PR +N S + S+ G+ PT +++P
Sbjct: 391 VSSGPVPRRQNGSSSSGPER-----SISGSKKPTNDSNP 424
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 46 SARHLPSPTRVSIPSPRSENRQR-----LSSERKKRLHLSVP-GAGPTQEADPPWP 95
+ H P RV P PR + +R L E K+R + P GAGP +E WP
Sbjct: 365 AGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP 420
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 33.5 bits (75), Expect = 0.038
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 46 SARHLPSPTRVSIPSPRSENRQR-----LSSERKKRLHLSVP-GAGPTQEADPPWP 95
+ H P RV P PR + +R L E K+R + P GAGP +E WP
Sbjct: 365 AGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP 420
>gi|23111007 hypothetical protein LOC79018 [Homo sapiens]
Length = 300
Score = 33.5 bits (75), Expect = 0.038
Identities = 30/69 (43%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 3 RGERALKPRARAYIGRPSRPHPTVGRPRGAQLP----GSCSL------LAPALSARHLPS 52
R ER L+ R RA GRPSRPHP RP G LP GS + L PAL+
Sbjct: 28 RPERLLR-RQRAG-GRPSRPHPARARP-GLSLPATLLGSRAAAAVPLPLPPALAPGDPAM 84
Query: 53 PTRVSIPSP 61
P R P P
Sbjct: 85 PVRTECPPP 93
>gi|155030230 sorbin and SH3 domain containing 3 isoform 1 [Homo
sapiens]
Length = 671
Score = 33.1 bits (74), Expect = 0.050
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 31 GAQLPGSCSLLAPALSARHLPSPTRVSIP----------SPRSENRQRLSSE-RKKRLHL 79
G QLP S L A A SARH SP+ + P SPR + E R + +L
Sbjct: 524 GPQLPTSPRLTAAARSARHPSSPSALRSPADPIDLGGQTSPRRTGFSFPTQEPRPQTQNL 583
Query: 80 SVPGAGPTQEADPPWPLEL 98
PG + P PL+L
Sbjct: 584 GTPGPALSHSRGPSHPLDL 602
>gi|65301112 sorbin and SH3 domain containing 3 isoform 2 [Homo
sapiens]
Length = 329
Score = 33.1 bits (74), Expect = 0.050
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 31 GAQLPGSCSLLAPALSARHLPSPTRVSIP----------SPRSENRQRLSSE-RKKRLHL 79
G QLP S L A A SARH SP+ + P SPR + E R + +L
Sbjct: 182 GPQLPTSPRLTAAARSARHPSSPSALRSPADPIDLGGQTSPRRTGFSFPTQEPRPQTQNL 241
Query: 80 SVPGAGPTQEADPPWPLEL 98
PG + P PL+L
Sbjct: 242 GTPGPALSHSRGPSHPLDL 260
>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
Length = 3957
Score = 32.7 bits (73), Expect = 0.065
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 15/97 (15%)
Query: 2 RRGERALKPRARAYI---GRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSI 58
+R E K R++ I G+ P T RP A P S RH P
Sbjct: 1775 KRVEDEQKGRSKLPIRVKGKEDVPKKTTHRPHPAASPS-------LKSERHAPGS----- 1822
Query: 59 PSPRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWP 95
PSP++E LSS K H V + T++ P P
Sbjct: 1823 PSPKTERHSTLSSSAKTERHPPVSPSSKTEKHSPVSP 1859
>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
Length = 365
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 4 GERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSC--SLLAPALSARHLPSPTRVSIP 59
G+ AL PR R Y P+ P P V GA P C S L AL A+ PSP R + P
Sbjct: 121 GDPAL-PRPRLYPAAPAMPSPDV--VYGALPPPGCDPSGLGEALPAQSRPSPFRPAAP 175
>gi|224809412 myocyte enhancer factor 2B isoform a [Homo sapiens]
Length = 368
Score = 31.6 bits (70), Expect = 0.14
Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 4 GERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSC--SLLAPALSARHLPSPTRVSIP 59
G+ AL PR R Y P+ P P V GA P C S L AL A+ PSP R + P
Sbjct: 121 GDPAL-PRPRLYPAAPAMPSPDV--VYGALPPPGCDPSGLGEALPAQSRPSPFRPAAP 175
>gi|30089980 chordin [Homo sapiens]
Length = 955
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 18 RPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRL 77
+P P P G+PR QLPG C P + P+ +S PR + S +
Sbjct: 103 KPECPTPACGQPR--QLPGHCCQTCPQERSSSERQPSGLSFEYPRDPEHRSYSDRGEPGA 160
Query: 78 HLSVPGAGPT 87
G G T
Sbjct: 161 EERARGDGHT 170
>gi|239746344 PREDICTED: hypothetical protein XP_002343734 [Homo
sapiens]
Length = 194
Score = 31.2 bits (69), Expect = 0.19
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 20 SRPH-PTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRLH 78
++PH P VG R AQ+P L R P+P R +PR R+RLS E +
Sbjct: 25 AQPHGPVVGSERRAQVPSERLHLLAVCRLRQAPAPRR----APRL--RRRLSFEVAREQE 78
Query: 79 LSVPGAGPTQEA 90
V A P Q A
Sbjct: 79 ALVAQAQPLQAA 90
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 21 RPHPTV---GRPRGAQ-LPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKR 76
RP+P GRP+G Q +P + P + RHL QR+ SE R
Sbjct: 432 RPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDR 491
Query: 77 LHLSVPGAGPTQE 89
L + GAG Q+
Sbjct: 492 LAMDFGGAGAAQQ 504
>gi|169166960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 30.8 bits (68), Expect = 0.25
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 18 RPSRPHPTVG-RPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKR 76
R R PT+G RPR P L PSP + R+ R+R + E +
Sbjct: 124 RSRRSAPTLGARPRRPTWPPRAQLKRGDQQPPPTPSPASQPRGARRARTRRRTNEESSRL 183
Query: 77 LHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
G+G EA E L CL WK
Sbjct: 184 QSQEGDGSGGKDEASSAAITEYLL-CLRTWK 213
>gi|169166769 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 30.8 bits (68), Expect = 0.25
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 18 RPSRPHPTVG-RPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKR 76
R R PT+G RPR P L PSP + R+ R+R + E +
Sbjct: 124 RSRRSAPTLGARPRRPTWPPRAQLKRGDQQPPPTPSPASQPRGARRARTRRRTNEESSRL 183
Query: 77 LHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
G+G EA E L CL WK
Sbjct: 184 QSQEGDGSGGKDEASSAAITEYLL-CLRTWK 213
>gi|169166416 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 30.8 bits (68), Expect = 0.25
Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 18 RPSRPHPTVG-RPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKR 76
R R PT+G RPR P L PSP + R+ R+R + E +
Sbjct: 124 RSRRSAPTLGARPRRPTWPPRAQLKRGDQQPPPTPSPASQPRGARRARTRRRTNEESSRL 183
Query: 77 LHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
G+G EA E L CL WK
Sbjct: 184 QSQEGDGSGGKDEASSAAITEYLL-CLRTWK 213
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 30.8 bits (68), Expect = 0.25
Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 20 SRPHPTV-GRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRLH 78
S P PT G P+ P S P A HLP + S + SE RL +
Sbjct: 848 SNPAPTAPGPPQPPLRPQSQPPEGPLPPAPHLPPSSTSSAVASSSETSSRLPAPTPSDFQ 907
Query: 79 LSV-PGAGPTQEADPPWPLEL 98
L P GP + PP L L
Sbjct: 908 LQFPPSQGPHKSPTPPPTLHL 928
>gi|31442420 shroom family member 1 [Homo sapiens]
Length = 847
Score = 30.8 bits (68), Expect = 0.25
Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 10 PRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSP---RSENR 66
PR R + S P PT L + L AL+A + V PSP R+ R
Sbjct: 83 PRPRPAVAARSGPQPTEVPGTPGPLNRQATPLLYALAAEAEAAAQAVEPPSPPASRAAYR 142
Query: 67 QRL----------SSERKKRLHLSVPG-AGPTQEADPP 93
QRL +S ++K L +S+P PT A PP
Sbjct: 143 QRLQGAQRRVLRETSFQRKELRMSLPARLRPTVPARPP 180
>gi|34878787 ring finger protein 25 [Homo sapiens]
Length = 459
Score = 30.8 bits (68), Expect = 0.25
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 19 PSRPHPTVGRPRGAQLPGSCSL---LAPALSARHLPSPTRVS-------IPSPRSENRQR 68
P+ P V +G+Q P + + +PA+ + LP P V+ IP RS N+QR
Sbjct: 271 PAEPESAVDVSKGSQPPSTLAAELSTSPAVQST-LPPPLPVATQHICEKIPGTRS-NQQR 328
Query: 69 LSSERKKRLHLSVPGAGPTQEADPPWP 95
L +K L P GP ++ + P
Sbjct: 329 LGETQKAMLDPPKPSRGPWRQPERRHP 355
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 30.4 bits (67), Expect = 0.32
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 7 ALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENR 66
A +PR+ P R +G P G+ LPGS +P L H P + +++PS
Sbjct: 814 ARRPRSLQESPAPRRAAGRLGPP-GSPLPGSPRPPSPPLGLCHSPRRSSLNLPSRLPHTW 872
Query: 67 QRLS 70
+RLS
Sbjct: 873 RRLS 876
>gi|148612825 Rap GTPase interactor [Homo sapiens]
Length = 1075
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 20 SRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRL 77
++P P R +P SC L AL AR SPT+ ++P RQ+L E + L
Sbjct: 361 AQPLPARALARLRAVPQSCRLCGAALGARGAASPTQAALP-----RRQQLLLEFEPHL 413
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 30.4 bits (67), Expect = 0.32
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 18 RPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRL 77
+P P P G+P+G G P P P + P P+ +N+ R S +
Sbjct: 128 QPQGPPPPPGKPQGPPPQGGNKPQGP-------PPPGKPQGPPPQGDNKSRSSRSPPGKP 180
Query: 78 HLSVPGAGPTQEADPPWP 95
P G + PP P
Sbjct: 181 QGPPPQGGNQPQGPPPPP 198
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 18 RPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRL 77
+P P P G+P+G G P P P + P P+ +N+ + + +
Sbjct: 190 QPQGPPPPPGKPQGPPPQGGNKPQGP-------PPPGKPQGPPPQGDNKSQSARSPPGKP 242
Query: 78 HLSVPGAGPTQEADPPWP 95
P G + PP P
Sbjct: 243 QGPPPQGGNQPQGPPPPP 260
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 30.0 bits (66), Expect = 0.42
Identities = 24/77 (31%), Positives = 27/77 (35%), Gaps = 15/77 (19%)
Query: 19 PSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRLH 78
P P P P A P S + P + LP P S P+PR RL
Sbjct: 314 PGTPQPAPQLPLNAAPPSS---VPPVPPSEALPPPACPSAPAPRRSIISRLF-------- 362
Query: 79 LSVPGAGPTQEADPPWP 95
G P EA PP P
Sbjct: 363 ----GTSPATEAAPPPP 375
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 52 SPTRVSIPSPR--SENRQRLSSERKKRLHLSVP--GAGPTQEADPPWP 95
+PT+ P+P+ SE + SS + S P G PT+ A PPWP
Sbjct: 479 APTKGPAPAPQQCSEPETKWSS-----IPASKPRRGTAPTRTAAPPWP 521
>gi|239757333 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 30.0 bits (66), Expect = 0.42
Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 26 VGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRLHLSVPGAG 85
+G RGA S LL A SA PS R +P + L E S A
Sbjct: 216 LGMGRGAVWNASAPLLNRASSASRWPSEYRKPGLAPGT-----LGPESTPSSAASWEAAI 270
Query: 86 PTQEADPPWPLELSLGCLSVWK 107
ADP WP E S G L + K
Sbjct: 271 GVTRADPTWPSEASGGALQMSK 292
>gi|239751837 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 30.0 bits (66), Expect = 0.42
Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 26 VGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRLHLSVPGAG 85
+G RGA S LL A SA PS R +P + L E S A
Sbjct: 216 LGMGRGAVWNASAPLLNRASSASRWPSEYRKPGLAPGT-----LGPESTPSSAASWEAAI 270
Query: 86 PTQEADPPWPLELSLGCLSVWK 107
ADP WP E S G L + K
Sbjct: 271 GVTRADPTWPSEASGGALQMSK 292
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,777,913
Number of Sequences: 37866
Number of extensions: 333653
Number of successful extensions: 1939
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 1815
Number of HSP's gapped (non-prelim): 305
length of query: 107
length of database: 18,247,518
effective HSP length: 77
effective length of query: 30
effective length of database: 15,331,836
effective search space: 459955080
effective search space used: 459955080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.