Guide to the Human Genome
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Search of human proteins with 169161539

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169161539 PREDICTED: hypothetical protein [Homo sapiens]
         (107 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169161772 PREDICTED: hypothetical protein [Homo sapiens]           223   3e-59
gi|169161539 PREDICTED: hypothetical protein [Homo sapiens]           223   3e-59
gi|169162816 PREDICTED: hypothetical protein [Homo sapiens]           223   3e-59
gi|169211906 PREDICTED: hypothetical protein [Homo sapiens]            35   0.017
gi|169211049 PREDICTED: hypothetical protein [Homo sapiens]            35   0.017
gi|112363080 microtubule associated serine/threonine kinase 2 [H...    34   0.022
gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo sa...    34   0.022
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ...    33   0.038
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ...    33   0.038
gi|23111007 hypothetical protein LOC79018 [Homo sapiens]               33   0.038
gi|155030230 sorbin and SH3 domain containing 3 isoform 1 [Homo ...    33   0.050
gi|65301112 sorbin and SH3 domain containing 3 isoform 2 [Homo s...    33   0.050
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]                         33   0.065
gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]         32   0.14 
gi|224809412 myocyte enhancer factor 2B isoform a [Homo sapiens]       32   0.14 
gi|30089980 chordin [Homo sapiens]                                     31   0.19 
gi|239746344 PREDICTED: hypothetical protein XP_002343734 [Homo ...    31   0.19 
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho...    31   0.19 
gi|169166960 PREDICTED: hypothetical protein [Homo sapiens]            31   0.25 
gi|169166769 PREDICTED: hypothetical protein [Homo sapiens]            31   0.25 
gi|169166416 PREDICTED: hypothetical protein [Homo sapiens]            31   0.25 
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho...    31   0.25 
gi|31442420 shroom family member 1 [Homo sapiens]                      31   0.25 
gi|34878787 ring finger protein 25 [Homo sapiens]                      31   0.25 
gi|118402590 myosin XV [Homo sapiens]                                  30   0.32 
gi|148612825 Rap GTPase interactor [Homo sapiens]                      30   0.32 
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]     30   0.32 
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi...    30   0.42 
gi|239757333 PREDICTED: hypothetical protein [Homo sapiens]            30   0.42 
gi|239751837 PREDICTED: hypothetical protein [Homo sapiens]            30   0.42 

>gi|169161772 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 107

 Score =  223 bits (567), Expect = 3e-59
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS 60
           MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS
Sbjct: 1   MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS 60

Query: 61  PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
           PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK
Sbjct: 61  PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107


>gi|169161539 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 107

 Score =  223 bits (567), Expect = 3e-59
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS 60
           MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS
Sbjct: 1   MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS 60

Query: 61  PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
           PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK
Sbjct: 61  PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107


>gi|169162816 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 107

 Score =  223 bits (567), Expect = 3e-59
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 1   MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS 60
           MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS
Sbjct: 1   MRRGERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPS 60

Query: 61  PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
           PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK
Sbjct: 61  PRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107


>gi|169211906 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 210

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 20/81 (24%)

Query: 18  RPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSP--------------------TRVS 57
           RP+R  PT  R    Q+P  CSL A  L A+H P P                    T   
Sbjct: 105 RPARHRPTWPRRAEPQVPEECSLPAGVLPAQHGPEPRPRGLQPAAHQLPGERGRGSTAAQ 164

Query: 58  IPSPRSENRQRLSSERKKRLH 78
            P   +E+R+  +  R+ +LH
Sbjct: 165 HPRRNTESREAQAPPRRAQLH 185


>gi|169211049 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 210

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 20/81 (24%)

Query: 18  RPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSP--------------------TRVS 57
           RP+R  PT  R    Q+P  CSL A  L A+H P P                    T   
Sbjct: 105 RPARHRPTWPRRAEPQVPEECSLPAGVLPAQHGPEPRPRGLQPAAHQLPGERGRGSTAAQ 164

Query: 58  IPSPRSENRQRLSSERKKRLH 78
            P   +E+R+  +  R+ +LH
Sbjct: 165 HPRRNTESREAQAPPRRAQLH 185


>gi|112363080 microtubule associated serine/threonine kinase 2 [Homo
            sapiens]
          Length = 1798

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 19   PSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRLH 78
            PS PH  +G P+  +   S S   P L       P    IP       Q L ++    L 
Sbjct: 1576 PSGPHRRLGSPQAIEEAASSSSAGPNLGQSGATDP----IPPEGCWKAQHLHTQALTALS 1631

Query: 79   LSVPGAGPTQEADPPWPLELSLGCLSVW 106
             S  G  PT    PP     + G LS+W
Sbjct: 1632 PSTSGLTPTSSCSPP---SSTSGKLSMW 1656


>gi|51702222 SPT2, Suppressor of Ty, domain containing 1 [Homo
           sapiens]
          Length = 685

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 13/99 (13%)

Query: 2   RRGERALKPRARAYIGRPS--RPHPTV-----GRPRGAQLPGSCSLLAPALSARHLPSPT 54
           R  + A++ +A+  +  PS  RP P V      +  G + PGS S  AP   +  +  PT
Sbjct: 331 RTQKSAVEHKAKKSLSHPSHSRPGPMVTPHNKAKSPGVRQPGSSSSSAPGQPSTGVARPT 390

Query: 55  RVSIPSPRSENRQRLSSERKKRLHLSVPGA-GPTQEADP 92
             S P PR +N    S   +     S+ G+  PT +++P
Sbjct: 391 VSSGPVPRRQNGSSSSGPER-----SISGSKKPTNDSNP 424


>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
           sapiens]
          Length = 647

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 46  SARHLPSPTRVSIPSPRSENRQR-----LSSERKKRLHLSVP-GAGPTQEADPPWP 95
           +  H   P RV  P PR +  +R     L  E K+R   + P GAGP +E    WP
Sbjct: 365 AGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP 420


>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
           sapiens]
          Length = 647

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 46  SARHLPSPTRVSIPSPRSENRQR-----LSSERKKRLHLSVP-GAGPTQEADPPWP 95
           +  H   P RV  P PR +  +R     L  E K+R   + P GAGP +E    WP
Sbjct: 365 AGNHASEPARVWSPPPRRQRPRRLPRASLQEEPKRRPPCARPSGAGPAREGPAAWP 420


>gi|23111007 hypothetical protein LOC79018 [Homo sapiens]
          Length = 300

 Score = 33.5 bits (75), Expect = 0.038
 Identities = 30/69 (43%), Positives = 33/69 (47%), Gaps = 13/69 (18%)

Query: 3  RGERALKPRARAYIGRPSRPHPTVGRPRGAQLP----GSCSL------LAPALSARHLPS 52
          R ER L+ R RA  GRPSRPHP   RP G  LP    GS +       L PAL+      
Sbjct: 28 RPERLLR-RQRAG-GRPSRPHPARARP-GLSLPATLLGSRAAAAVPLPLPPALAPGDPAM 84

Query: 53 PTRVSIPSP 61
          P R   P P
Sbjct: 85 PVRTECPPP 93


>gi|155030230 sorbin and SH3 domain containing 3 isoform 1 [Homo
           sapiens]
          Length = 671

 Score = 33.1 bits (74), Expect = 0.050
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 31  GAQLPGSCSLLAPALSARHLPSPTRVSIP----------SPRSENRQRLSSE-RKKRLHL 79
           G QLP S  L A A SARH  SP+ +  P          SPR       + E R +  +L
Sbjct: 524 GPQLPTSPRLTAAARSARHPSSPSALRSPADPIDLGGQTSPRRTGFSFPTQEPRPQTQNL 583

Query: 80  SVPGAGPTQEADPPWPLEL 98
             PG   +    P  PL+L
Sbjct: 584 GTPGPALSHSRGPSHPLDL 602


>gi|65301112 sorbin and SH3 domain containing 3 isoform 2 [Homo
           sapiens]
          Length = 329

 Score = 33.1 bits (74), Expect = 0.050
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 11/79 (13%)

Query: 31  GAQLPGSCSLLAPALSARHLPSPTRVSIP----------SPRSENRQRLSSE-RKKRLHL 79
           G QLP S  L A A SARH  SP+ +  P          SPR       + E R +  +L
Sbjct: 182 GPQLPTSPRLTAAARSARHPSSPSALRSPADPIDLGGQTSPRRTGFSFPTQEPRPQTQNL 241

Query: 80  SVPGAGPTQEADPPWPLEL 98
             PG   +    P  PL+L
Sbjct: 242 GTPGPALSHSRGPSHPLDL 260


>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
          Length = 3957

 Score = 32.7 bits (73), Expect = 0.065
 Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 15/97 (15%)

Query: 2    RRGERALKPRARAYI---GRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSI 58
            +R E   K R++  I   G+   P  T  RP  A  P          S RH P       
Sbjct: 1775 KRVEDEQKGRSKLPIRVKGKEDVPKKTTHRPHPAASPS-------LKSERHAPGS----- 1822

Query: 59   PSPRSENRQRLSSERKKRLHLSVPGAGPTQEADPPWP 95
            PSP++E    LSS  K   H  V  +  T++  P  P
Sbjct: 1823 PSPKTERHSTLSSSAKTERHPPVSPSSKTEKHSPVSP 1859


>gi|5174543 myocyte enhancer factor 2B isoform b [Homo sapiens]
          Length = 365

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 4   GERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSC--SLLAPALSARHLPSPTRVSIP 59
           G+ AL PR R Y   P+ P P V    GA  P  C  S L  AL A+  PSP R + P
Sbjct: 121 GDPAL-PRPRLYPAAPAMPSPDV--VYGALPPPGCDPSGLGEALPAQSRPSPFRPAAP 175


>gi|224809412 myocyte enhancer factor 2B isoform a [Homo sapiens]
          Length = 368

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 4   GERALKPRARAYIGRPSRPHPTVGRPRGAQLPGSC--SLLAPALSARHLPSPTRVSIP 59
           G+ AL PR R Y   P+ P P V    GA  P  C  S L  AL A+  PSP R + P
Sbjct: 121 GDPAL-PRPRLYPAAPAMPSPDV--VYGALPPPGCDPSGLGEALPAQSRPSPFRPAAP 175


>gi|30089980 chordin [Homo sapiens]
          Length = 955

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 18  RPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRL 77
           +P  P P  G+PR  QLPG C    P   +     P+ +S   PR    +  S   +   
Sbjct: 103 KPECPTPACGQPR--QLPGHCCQTCPQERSSSERQPSGLSFEYPRDPEHRSYSDRGEPGA 160

Query: 78  HLSVPGAGPT 87
                G G T
Sbjct: 161 EERARGDGHT 170


>gi|239746344 PREDICTED: hypothetical protein XP_002343734 [Homo
          sapiens]
          Length = 194

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 20 SRPH-PTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRLH 78
          ++PH P VG  R AQ+P     L      R  P+P R    +PR   R+RLS E  +   
Sbjct: 25 AQPHGPVVGSERRAQVPSERLHLLAVCRLRQAPAPRR----APRL--RRRLSFEVAREQE 78

Query: 79 LSVPGAGPTQEA 90
            V  A P Q A
Sbjct: 79 ALVAQAQPLQAA 90


>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
           sapiens]
          Length = 660

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 21  RPHPTV---GRPRGAQ-LPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKR 76
           RP+P     GRP+G Q +P +     P  + RHL                QR+ SE   R
Sbjct: 432 RPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDR 491

Query: 77  LHLSVPGAGPTQE 89
           L +   GAG  Q+
Sbjct: 492 LAMDFGGAGAAQQ 504


>gi|169166960 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 216

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 18  RPSRPHPTVG-RPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKR 76
           R  R  PT+G RPR    P    L          PSP      + R+  R+R + E  + 
Sbjct: 124 RSRRSAPTLGARPRRPTWPPRAQLKRGDQQPPPTPSPASQPRGARRARTRRRTNEESSRL 183

Query: 77  LHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
                 G+G   EA      E  L CL  WK
Sbjct: 184 QSQEGDGSGGKDEASSAAITEYLL-CLRTWK 213


>gi|169166769 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 216

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 18  RPSRPHPTVG-RPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKR 76
           R  R  PT+G RPR    P    L          PSP      + R+  R+R + E  + 
Sbjct: 124 RSRRSAPTLGARPRRPTWPPRAQLKRGDQQPPPTPSPASQPRGARRARTRRRTNEESSRL 183

Query: 77  LHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
                 G+G   EA      E  L CL  WK
Sbjct: 184 QSQEGDGSGGKDEASSAAITEYLL-CLRTWK 213


>gi|169166416 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 216

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 2/91 (2%)

Query: 18  RPSRPHPTVG-RPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKR 76
           R  R  PT+G RPR    P    L          PSP      + R+  R+R + E  + 
Sbjct: 124 RSRRSAPTLGARPRRPTWPPRAQLKRGDQQPPPTPSPASQPRGARRARTRRRTNEESSRL 183

Query: 77  LHLSVPGAGPTQEADPPWPLELSLGCLSVWK 107
                 G+G   EA      E  L CL  WK
Sbjct: 184 QSQEGDGSGGKDEASSAAITEYLL-CLRTWK 213


>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
           sapiens]
          Length = 1560

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 20  SRPHPTV-GRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRLH 78
           S P PT  G P+    P S     P   A HLP  +  S  +  SE   RL +       
Sbjct: 848 SNPAPTAPGPPQPPLRPQSQPPEGPLPPAPHLPPSSTSSAVASSSETSSRLPAPTPSDFQ 907

Query: 79  LSV-PGAGPTQEADPPWPLEL 98
           L   P  GP +   PP  L L
Sbjct: 908 LQFPPSQGPHKSPTPPPTLHL 928


>gi|31442420 shroom family member 1 [Homo sapiens]
          Length = 847

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 10  PRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSP---RSENR 66
           PR R  +   S P PT        L    + L  AL+A    +   V  PSP   R+  R
Sbjct: 83  PRPRPAVAARSGPQPTEVPGTPGPLNRQATPLLYALAAEAEAAAQAVEPPSPPASRAAYR 142

Query: 67  QRL----------SSERKKRLHLSVPG-AGPTQEADPP 93
           QRL          +S ++K L +S+P    PT  A PP
Sbjct: 143 QRLQGAQRRVLRETSFQRKELRMSLPARLRPTVPARPP 180


>gi|34878787 ring finger protein 25 [Homo sapiens]
          Length = 459

 Score = 30.8 bits (68), Expect = 0.25
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 12/87 (13%)

Query: 19  PSRPHPTVGRPRGAQLPGSCSL---LAPALSARHLPSPTRVS-------IPSPRSENRQR 68
           P+ P   V   +G+Q P + +     +PA+ +  LP P  V+       IP  RS N+QR
Sbjct: 271 PAEPESAVDVSKGSQPPSTLAAELSTSPAVQST-LPPPLPVATQHICEKIPGTRS-NQQR 328

Query: 69  LSSERKKRLHLSVPGAGPTQEADPPWP 95
           L   +K  L    P  GP ++ +   P
Sbjct: 329 LGETQKAMLDPPKPSRGPWRQPERRHP 355


>gi|118402590 myosin XV [Homo sapiens]
          Length = 3530

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 7   ALKPRARAYIGRPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENR 66
           A +PR+      P R    +G P G+ LPGS    +P L   H P  + +++PS      
Sbjct: 814 ARRPRSLQESPAPRRAAGRLGPP-GSPLPGSPRPPSPPLGLCHSPRRSSLNLPSRLPHTW 872

Query: 67  QRLS 70
           +RLS
Sbjct: 873 RRLS 876


>gi|148612825 Rap GTPase interactor [Homo sapiens]
          Length = 1075

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 20  SRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRL 77
           ++P P     R   +P SC L   AL AR   SPT+ ++P      RQ+L  E +  L
Sbjct: 361 AQPLPARALARLRAVPQSCRLCGAALGARGAASPTQAALP-----RRQQLLLEFEPHL 413


>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
          Length = 416

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 18  RPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRL 77
           +P  P P  G+P+G    G      P       P P +   P P+ +N+ R S     + 
Sbjct: 128 QPQGPPPPPGKPQGPPPQGGNKPQGP-------PPPGKPQGPPPQGDNKSRSSRSPPGKP 180

Query: 78  HLSVPGAGPTQEADPPWP 95
               P  G   +  PP P
Sbjct: 181 QGPPPQGGNQPQGPPPPP 198



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 18  RPSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRL 77
           +P  P P  G+P+G    G      P       P P +   P P+ +N+ + +     + 
Sbjct: 190 QPQGPPPPPGKPQGPPPQGGNKPQGP-------PPPGKPQGPPPQGDNKSQSARSPPGKP 242

Query: 78  HLSVPGAGPTQEADPPWP 95
               P  G   +  PP P
Sbjct: 243 QGPPPQGGNQPQGPPPPP 260


>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
           sapiens]
          Length = 729

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 24/77 (31%), Positives = 27/77 (35%), Gaps = 15/77 (19%)

Query: 19  PSRPHPTVGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRLH 78
           P  P P    P  A  P S   + P   +  LP P   S P+PR     RL         
Sbjct: 314 PGTPQPAPQLPLNAAPPSS---VPPVPPSEALPPPACPSAPAPRRSIISRLF-------- 362

Query: 79  LSVPGAGPTQEADPPWP 95
               G  P  EA PP P
Sbjct: 363 ----GTSPATEAAPPPP 375



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 9/48 (18%)

Query: 52  SPTRVSIPSPR--SENRQRLSSERKKRLHLSVP--GAGPTQEADPPWP 95
           +PT+   P+P+  SE   + SS     +  S P  G  PT+ A PPWP
Sbjct: 479 APTKGPAPAPQQCSEPETKWSS-----IPASKPRRGTAPTRTAAPPWP 521


>gi|239757333 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 26  VGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRLHLSVPGAG 85
           +G  RGA    S  LL  A SA   PS  R    +P +     L  E       S   A 
Sbjct: 216 LGMGRGAVWNASAPLLNRASSASRWPSEYRKPGLAPGT-----LGPESTPSSAASWEAAI 270

Query: 86  PTQEADPPWPLELSLGCLSVWK 107
               ADP WP E S G L + K
Sbjct: 271 GVTRADPTWPSEASGGALQMSK 292


>gi|239751837 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 26  VGRPRGAQLPGSCSLLAPALSARHLPSPTRVSIPSPRSENRQRLSSERKKRLHLSVPGAG 85
           +G  RGA    S  LL  A SA   PS  R    +P +     L  E       S   A 
Sbjct: 216 LGMGRGAVWNASAPLLNRASSASRWPSEYRKPGLAPGT-----LGPESTPSSAASWEAAI 270

Query: 86  PTQEADPPWPLELSLGCLSVWK 107
               ADP WP E S G L + K
Sbjct: 271 GVTRADPTWPSEASGGALQMSK 292


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,777,913
Number of Sequences: 37866
Number of extensions: 333653
Number of successful extensions: 1939
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 1815
Number of HSP's gapped (non-prelim): 305
length of query: 107
length of database: 18,247,518
effective HSP length: 77
effective length of query: 30
effective length of database: 15,331,836
effective search space: 459955080
effective search space used: 459955080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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