Guide to the Human Genome
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Name: LOC100130982 Sequence: fasta or formatted (216aa) NCBI GI: 169166416
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {216aa} PREDICTED: hypothetical protein
alt prot {216aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         23           3
 C cysteine            0.9          2           1
 D aspartate           2.3          5           1
 E glutamate           5.6         12           2
 F phenylalanine       0.0          0           0
 G glycine             8.3         18           2
 H histidine           2.3          5           1
 I isoleucine          0.5          1           1
 K lysine              5.6         12           2
 L leucine             5.6         12           2
 M methionine          0.9          2           1
 N asparagine          1.9          4           1
 P proline            11.6         25           3
 Q glutamine           6.0         13           2
 R arginine           19.9         43           3
 S serine              7.4         16           2
 T threonine           6.9         15           1
 V valine              1.4          3           1
 W tryptophan          1.4          3           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130982          1.000   PREDICTED: hypothetical protein 
LOC100130982          0.988   PREDICTED: hypothetical protein 
SRRM2                 0.059   splicing coactivator subunit SRm300 
LOC100286959          0.057   PREDICTED: hypothetical protein XP_002343921 
PRB3                  0.055   proline-rich protein BstNI subfamily 3 precursor [H...
SRRM1                 0.055   serine/arginine repetitive matrix 1 
CDC2L5                0.052   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.052   cell division cycle 2-like 5 isoform 2 
PRB4                  0.052   proline-rich protein BstNI subfamily 4 precursor [Ho...
SYN1                  0.050   synapsin I isoform Ia 
SYN1                  0.050   synapsin I isoform Ib 
FLJ37078              0.050   hypothetical protein LOC222183 
SON                   0.050   SON DNA-binding protein isoform F 
SON                   0.050   SON DNA-binding protein isoform B 
USP51                 0.048   ubiquitin specific protease 51 
LOC100292035          0.048   PREDICTED: hypothetical protein XP_002345623 
LOC729370             0.043   PREDICTED: hypothetical protein 
PRB1                  0.040   proline-rich protein BstNI subfamily 1 isoform 1 pre...
RP1L1                 0.040   retinitis pigmentosa 1-like 1 
WWP2                  0.040   WW domain containing E3 ubiquitin protein ligase 2 i...
WWP2                  0.040   WW domain containing E3 ubiquitin protein ligase 2 i...
LOC100292370          0.038   PREDICTED: hypothetical protein 
FLJ22184              0.038   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.038   PREDICTED: hypothetical protein FLJ22184 
BBC3                  0.038   BCL2 binding component 3 isoform 1 
PRB2                  0.038   proline-rich protein BstNI subfamily 2 
LOC338758             0.036   PREDICTED: hypothetical protein 
LOC338758             0.036   PREDICTED: hypothetical protein 
FLJ22184              0.036   PREDICTED: hypothetical protein LOC80164 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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