Guide to the Human Genome
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Name: LOC100132870 Sequence: fasta or formatted (107aa) NCBI GI: 169161539
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {107aa} PREDICTED: hypothetical protein
alt mRNA {107aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4          9           1
 C cysteine            1.9          2           1
 D aspartate           0.9          1           1
 E glutamate           4.7          5           1
 F phenylalanine       0.0          0           0
 G glycine             7.5          8           1
 H histidine           2.8          3           1
 I isoleucine          1.9          2           1
 K lysine              3.7          4           2
 L leucine            12.1         13           2
 M methionine          0.9          1           1
 N asparagine          0.9          1           1
 P proline            15.0         16           2
 Q glutamine           2.8          3           1
 R arginine           15.0         16           2
 S serine             12.1         13           2
 T threonine           2.8          3           1
 V valine              3.7          4           1
 W tryptophan          1.9          2           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132870          1.000   PREDICTED: hypothetical protein 
LOC100132870          1.000   PREDICTED: hypothetical protein 
LOC100131091          0.051   PREDICTED: hypothetical protein 
LOC100131091          0.051   PREDICTED: hypothetical protein 
MAST2                 0.045   microtubule associated serine/threonine kinase 2 [H...
SPTY2D1               0.045   SPT2, Suppressor of Ty, domain containing 1 
LOC100290372          0.040   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.040   PREDICTED: hypothetical protein XP_002342652 
C17orf39              0.040   hypothetical protein LOC79018 
SORBS3                0.040   sorbin and SH3 domain containing 3 isoform 1 
SORBS3                0.040   sorbin and SH3 domain containing 3 isoform 2 
ANK2                  0.040   ankyrin 2 isoform 1 
LOC729991-MEF2B       0.035   myocyte enhancer factor 2B isoform b 
MEF2B                 0.035   myocyte enhancer factor 2B isoform a 
CHRD                  0.030   chordin 
LOC100287716          0.030   PREDICTED: hypothetical protein XP_002343734 
PABPC4                0.030   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
LOC100130982          0.030   PREDICTED: hypothetical protein 
LOC100130982          0.030   PREDICTED: hypothetical protein 
LOC100130982          0.030   PREDICTED: hypothetical protein 
GLTSCR1               0.030   glioma tumor suppressor candidate region gene 1 [Ho...
SHROOM1               0.030   shroom family member 1 
RNF25                 0.030   ring finger protein 25 
MYO15A                0.025   myosin XV 
RADIL                 0.025   Rap GTPase interactor 
PRB2                  0.025   proline-rich protein BstNI subfamily 2 
C9orf86               0.025   Rab-like GTP-binding protein 1 isoform 1 
LOC100293773          0.025   PREDICTED: hypothetical protein 
LOC100287376          0.025   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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