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Search of human proteins with 169161248
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169161248 PREDICTED: hypothetical protein LOC100128071 [Homo
sapiens]
(127 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169160607 PREDICTED: hypothetical protein LOC100128071 [Homo ... 265 5e-72
gi|169161545 PREDICTED: hypothetical protein LOC100128071 [Homo ... 265 5e-72
gi|169161248 PREDICTED: hypothetical protein LOC100128071 [Homo ... 265 5e-72
gi|75677559 hypothetical protein LOC619208 [Homo sapiens] 58 2e-09
gi|150170670 piccolo isoform 2 [Homo sapiens] 41 3e-04
gi|150378539 piccolo isoform 1 [Homo sapiens] 41 3e-04
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 40 4e-04
gi|4758156 diacylglycerol kinase, iota [Homo sapiens] 38 0.002
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 37 0.003
gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens] 37 0.003
gi|148762978 similar to CG15216-PA [Homo sapiens] 37 0.003
gi|8659574 transcription factor E3 [Homo sapiens] 37 0.004
gi|19924099 synapsin I isoform Ia [Homo sapiens] 37 0.004
gi|19924097 synapsin I isoform Ib [Homo sapiens] 37 0.004
gi|18079216 CASK interacting protein 1 [Homo sapiens] 37 0.005
gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens] 37 0.005
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 36 0.007
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 36 0.007
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 36 0.007
gi|27544941 myosin IF [Homo sapiens] 36 0.007
gi|60498978 elastin microfibril interfacer 2 [Homo sapiens] 36 0.007
gi|46358366 zinc finger protein 746 [Homo sapiens] 36 0.007
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 36 0.009
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 35 0.012
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re... 35 0.012
gi|171906567 peripheral benzodiazepine receptor-associated prote... 35 0.012
gi|171906559 peripheral benzodiazepine receptor-associated prote... 35 0.012
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 35 0.012
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 35 0.016
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 35 0.016
>gi|169160607 PREDICTED: hypothetical protein LOC100128071 [Homo
sapiens]
Length = 127
Score = 265 bits (678), Expect = 5e-72
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MLPSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQG 60
MLPSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQG
Sbjct: 1 MLPSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQG 60
Query: 61 RRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPGCHCLTLLHVPIDVYLAMGG 120
RRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPGCHCLTLLHVPIDVYLAMGG
Sbjct: 61 RRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPGCHCLTLLHVPIDVYLAMGG 120
Query: 121 SPRARAT 127
SPRARAT
Sbjct: 121 SPRARAT 127
>gi|169161545 PREDICTED: hypothetical protein LOC100128071 [Homo
sapiens]
Length = 127
Score = 265 bits (678), Expect = 5e-72
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MLPSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQG 60
MLPSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQG
Sbjct: 1 MLPSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQG 60
Query: 61 RRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPGCHCLTLLHVPIDVYLAMGG 120
RRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPGCHCLTLLHVPIDVYLAMGG
Sbjct: 61 RRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPGCHCLTLLHVPIDVYLAMGG 120
Query: 121 SPRARAT 127
SPRARAT
Sbjct: 121 SPRARAT 127
>gi|169161248 PREDICTED: hypothetical protein LOC100128071 [Homo
sapiens]
Length = 127
Score = 265 bits (678), Expect = 5e-72
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MLPSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQG 60
MLPSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQG
Sbjct: 1 MLPSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQG 60
Query: 61 RRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPGCHCLTLLHVPIDVYLAMGG 120
RRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPGCHCLTLLHVPIDVYLAMGG
Sbjct: 61 RRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPGCHCLTLLHVPIDVYLAMGG 120
Query: 121 SPRARAT 127
SPRARAT
Sbjct: 121 SPRARAT 127
>gi|75677559 hypothetical protein LOC619208 [Homo sapiens]
Length = 80
Score = 58.2 bits (139), Expect = 2e-09
Identities = 30/64 (46%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 52 MSAQEPPQGRRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPGCHCLTLLHVP 111
M Q Q RRFP+E GDS + P S E +P R LRRCPG HCLT+ VP
Sbjct: 1 MPFQFGTQPRRFPVEGGDS-SIELEPGLSSSAACNGKEMSPTRQLRRCPGSHCLTITDVP 59
Query: 112 IDVY 115
+ VY
Sbjct: 60 VTVY 63
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 40.8 bits (94), Expect = 3e-04
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 3 PSSTPGPGHATETCPAP------PGPERSPAARAPAAASSLGPVSTAGRAPRG--LDMSA 54
P S GPG + PAP GP +S PA A S+ PV +AP L+ A
Sbjct: 954 PHSQSGPGAPMKQAPAPSQPPTSQGPPKSTGQAPPAPAKSI-PVKKETKAPAAEKLEPKA 1012
Query: 55 QEPPQGRRF-----PIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPGC 102
++ P +R P DS+ L A P+ P + E +P +P CP C
Sbjct: 1013 EQAPTVKRTETEKKPPPIKDSKSLTAEPQKAVLPTKL--EKSP-KPESTCPLC 1062
Score = 36.6 bits (83), Expect = 0.005
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 3 PSSTPGPGHATETCPAPPGPERSPAARA---PAAASSLGPVSTAGRAPRGLDMSAQEPPQ 59
P+ PGP T+T PGP + PA +A +A GP + P Q+P
Sbjct: 430 PAKAPGP---TKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGP 486
Query: 60 GRRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPG 101
+ P + G ++ + P S P + P +P + PG
Sbjct: 487 AKPPPQQPGSAKPPSQQPGSTKPP---PQQPGPAKPSPQQPG 525
Score = 28.1 bits (61), Expect = 1.9
Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 26/134 (19%)
Query: 3 PSSTPGPGHATETCPAP--PGPERSPAARAPA--------AASSLGPVSTAGRAPRGLDM 52
PS PGP P P P P++ +A+ P+ GP + + P
Sbjct: 470 PSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKP 529
Query: 53 SAQEPPQGR---RFPIEAGDSRGLAAAPESQD-----------SPEAVATEHNPVRPLRR 98
+Q+P + + P A S + P SQ SP A + P
Sbjct: 530 PSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQGL-PKTI 588
Query: 99 CPGCHCL-TLLHVP 111
CP C+ LLHVP
Sbjct: 589 CPLCNTTELLLHVP 602
Score = 26.6 bits (57), Expect = 5.5
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 2 LPSSTPGPG--HATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQ 59
+P+ GPG A +T P P P + P P GP + P +Q+P
Sbjct: 449 IPAQQAGPGKTSAQQTGPTKP-PSQLPGPAKPPPQQP-GPAKPPPQQPGSAKPPSQQPGS 506
Query: 60 GRRFPIEAGDSRGLAAAPESQDSP 83
+ P + G ++ P S P
Sbjct: 507 TKPPPQQPGPAKPSPQQPGSTKPP 530
Score = 26.2 bits (56), Expect = 7.2
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 20 PGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQGRRFPIEAGDSRGLAAAPES 79
P P+ P + + + GP TAG+ S + Q RRF + G + AP+S
Sbjct: 864 PKPDAKPMPKG--SPTPPGPRPTAGQTVPTPQQSPKPQEQSRRFSLNLG---SITDAPKS 918
Query: 80 Q-DSPEAVAT 88
Q +P+ T
Sbjct: 919 QPTTPQETVT 928
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 40.8 bits (94), Expect = 3e-04
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 3 PSSTPGPGHATETCPAP------PGPERSPAARAPAAASSLGPVSTAGRAPRG--LDMSA 54
P S GPG + PAP GP +S PA A S+ PV +AP L+ A
Sbjct: 954 PHSQSGPGAPMKQAPAPSQPPTSQGPPKSTGQAPPAPAKSI-PVKKETKAPAAEKLEPKA 1012
Query: 55 QEPPQGRRF-----PIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPGC 102
++ P +R P DS+ L A P+ P + E +P +P CP C
Sbjct: 1013 EQAPTVKRTETEKKPPPIKDSKSLTAEPQKAVLPTKL--EKSP-KPESTCPLC 1062
Score = 36.6 bits (83), Expect = 0.005
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 3 PSSTPGPGHATETCPAPPGPERSPAARA---PAAASSLGPVSTAGRAPRGLDMSAQEPPQ 59
P+ PGP T+T PGP + PA +A +A GP + P Q+P
Sbjct: 430 PAKAPGP---TKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGP 486
Query: 60 GRRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPG 101
+ P + G ++ + P S P + P +P + PG
Sbjct: 487 AKPPPQQPGSAKPPSQQPGSTKPP---PQQPGPAKPSPQQPG 525
Score = 28.1 bits (61), Expect = 1.9
Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 26/134 (19%)
Query: 3 PSSTPGPGHATETCPAP--PGPERSPAARAPA--------AASSLGPVSTAGRAPRGLDM 52
PS PGP P P P P++ +A+ P+ GP + + P
Sbjct: 470 PSQLPGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKP 529
Query: 53 SAQEPPQGR---RFPIEAGDSRGLAAAPESQD-----------SPEAVATEHNPVRPLRR 98
+Q+P + + P A S + P SQ SP A + P
Sbjct: 530 PSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQGL-PKTI 588
Query: 99 CPGCHCL-TLLHVP 111
CP C+ LLHVP
Sbjct: 589 CPLCNTTELLLHVP 602
Score = 26.6 bits (57), Expect = 5.5
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 2 LPSSTPGPG--HATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQ 59
+P+ GPG A +T P P P + P P GP + P +Q+P
Sbjct: 449 IPAQQAGPGKTSAQQTGPTKP-PSQLPGPAKPPPQQP-GPAKPPPQQPGSAKPPSQQPGS 506
Query: 60 GRRFPIEAGDSRGLAAAPESQDSP 83
+ P + G ++ P S P
Sbjct: 507 TKPPPQQPGPAKPSPQQPGSTKPP 530
Score = 26.2 bits (56), Expect = 7.2
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 20 PGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQGRRFPIEAGDSRGLAAAPES 79
P P+ P + + + GP TAG+ S + Q RRF + G + AP+S
Sbjct: 864 PKPDAKPMPKG--SPTPPGPRPTAGQTVPTPQQSPKPQEQSRRFSLNLG---SITDAPKS 918
Query: 80 Q-DSPEAVAT 88
Q +P+ T
Sbjct: 919 QPTTPQETVT 928
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 40.4 bits (93), Expect = 4e-04
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 2 LPSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQE----P 57
+PS TET P PPGP + A AAA P G P G + S++
Sbjct: 2352 VPSEDCAANGPTETSPNPPGPAPAKAENEEAAAC---PAWERGAWPEGAERSSRPDTLLS 2408
Query: 58 PQGRRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVR 94
P+ P +A+PE + P+ ATE P R
Sbjct: 2409 PEQPVCPAGGSGGPPSSASPEVEAGPQGCATEPRPHR 2445
Score = 26.6 bits (57), Expect = 5.5
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 7 PGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQGRRFPIE 66
P PGH P P P SP A G S +GR R + + GRR P +
Sbjct: 2554 PRPGHDPPPLPQPD-PRPSPPRPDVCMADPEGLSSESGRVERLREKEKVQGRVGRRAPGK 2612
Query: 67 A 67
A
Sbjct: 2613 A 2613
Score = 26.2 bits (56), Expect = 7.2
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 11/106 (10%)
Query: 2 LPSSTPGPGHATETCPA-----PPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQE 56
L S TP +A P PGP P+ PA +S P ++ +
Sbjct: 2026 LQSDTPTFSYAALAGPTVPPRPEPGPSMEPSLTPPAVPPRAPILSKGPSPPLNGNILSCS 2085
Query: 57 PPQGRRFPIEAGDSRGLAAAPESQ------DSPEAVATEHNPVRPL 96
P + P E+G S + +S+ + PE A +P P+
Sbjct: 2086 PDRRSPSPKESGRSHWDDSTSDSELEKGAREQPEKEAQSPSPPHPI 2131
Score = 26.2 bits (56), Expect = 7.2
Identities = 27/101 (26%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 3 PSSTPGPGHATETCPAPPGPERSPAARAPAAASS-----LGPVSTAGRAPRGLDMSAQEP 57
P+S G + PP E P+ A AA S PV AG G+ +
Sbjct: 2500 PTSASDSGSSQSDSDVPPETEECPSITAEAALDSDEDGDFLPVDKAG----GVSGTHHPR 2555
Query: 58 PQGRRFPIEAGDSRGLAAAPE-SQDSPEAVATEHNPVRPLR 97
P P+ D R P+ PE +++E V LR
Sbjct: 2556 PGHDPPPLPQPDPRPSPPRPDVCMADPEGLSSESGRVERLR 2596
>gi|4758156 diacylglycerol kinase, iota [Homo sapiens]
Length = 1065
Score = 37.7 bits (86), Expect = 0.002
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 17 PAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQGRRFPIEAGDSRGLAAA 76
PA GP R+PAA A AAAS GP S A AP + P AG+ +G
Sbjct: 14 PAARGPARAPAAAAAAAASPPGPCSGAACAPSAAAGAGAMNPSS-----SAGEEKGATGG 68
Query: 77 PESQDS 82
S S
Sbjct: 69 SSSSGS 74
Score = 27.3 bits (59), Expect = 3.2
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 9 PGHATETCPAPPGPERSPAARAPAAASSLG---PVSTAG 44
P A +PPGP S AA AP+AA+ G P S+AG
Sbjct: 23 PAAAAAAAASPPGP-CSGAACAPSAAAGAGAMNPSSSAG 60
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 37.4 bits (85), Expect = 0.003
Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 13/80 (16%)
Query: 3 PSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQGRR 62
P +TP PG PAPP + P P A GP G AP Q PP+
Sbjct: 14 PGATPAPGPPPPPPPAPPQQQPPP---PPPPAPPPGP----GPAP------PQHPPRAEA 60
Query: 63 FPIEAGDSRGLAAAPESQDS 82
P EA D G S+DS
Sbjct: 61 LPPEAADEGGPRGRLRSRDS 80
Score = 32.0 bits (71), Expect = 0.13
Identities = 33/110 (30%), Positives = 43/110 (39%), Gaps = 11/110 (10%)
Query: 3 PSSTPGPGHATETCPAPPGPERSPAA-RAP--------AAASSLGPVSTAGRAPR-GLDM 52
P P P A+ P P P +PA+ RAP AA GP A R R +
Sbjct: 761 PPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRPL 820
Query: 53 SAQEPPQGRRFPIEAGDSR-GLAAAPESQDSPEAVATEHNPVRPLRRCPG 101
SA +P P A +R ++ P +P A A +P R PG
Sbjct: 821 SASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRRDSASPG 870
Score = 26.6 bits (57), Expect = 5.5
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 4 SSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTA 43
SSTP G A P P+R +A +P AA L P +A
Sbjct: 843 SSTPRLGPTPAARAAAPSPDRRDSA-SPGAAGGLDPQDSA 881
>gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]
Length = 1316
Score = 37.4 bits (85), Expect = 0.003
Identities = 29/95 (30%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Query: 7 PGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQGRRFPIE 66
P PG E AP P SPA SL V R S+ EP + R E
Sbjct: 918 PSPGERVEDAAAPKAPGPSPAKEK---IGSLRKVDRGHYRSRRERSSSGEPARESRSKTE 974
Query: 67 AGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPG 101
R P +D + A EH+P R PG
Sbjct: 975 GHRHRRRRTCPRERDRQDRHAPEHHPGHGDRLSPG 1009
>gi|148762978 similar to CG15216-PA [Homo sapiens]
Length = 976
Score = 37.4 bits (85), Expect = 0.003
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 10 GHATETCPAPPGPERS-PAARAPAAASSLGPVS-TAGRAPRGLDMSAQEPPQGRRFPIEA 67
G A ET P PP PE + P AR A S +A RAP GL + PP R EA
Sbjct: 61 GPAMETLPEPPPPESAVPRARTREAEPRRRARSKSAPRAPPGLTPAPASPPVLPRRGREA 120
Query: 68 GDSRGLAAAPESQDSPEAVATEHNPVRPLRRCP 100
+ A+P + + A+ N + P++ P
Sbjct: 121 QRAARAEASPRREPAYPALRALANELHPIKLQP 153
>gi|8659574 transcription factor E3 [Homo sapiens]
Length = 575
Score = 37.0 bits (84), Expect = 0.004
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 4 SSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGL 50
S+T GP A++ PPGP + AP AA + GP +A +P L
Sbjct: 204 STTLGPKLASQALTPPPGPASAQPLPAPEAAHTTGPTGSAPNSPMAL 250
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 37.0 bits (84), Expect = 0.004
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 4 SSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAG--RAPRGLDMSAQEPPQGR 61
++ P G ++ P GP PAAR PA+ S P AG +A R +S PP+
Sbjct: 522 AAPPTQGQGRQSRPVAGGPGAPPAARPPASPS---PQRQAGPPQATRQTSVSGPAPPKAS 578
Query: 62 RFPIEAGDSRGLAAAPESQDSPEAVATEHNPV 93
P +G P P A++ PV
Sbjct: 579 GAPPGGQQRQGPPQKPPGPAGPTRQASQAGPV 610
Score = 33.1 bits (74), Expect = 0.059
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 3 PSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRA 46
P +TPGPG AT + P SPAA +P ++ G S+ A
Sbjct: 40 PGATPGPGTATAERSSGVAPAASPAAPSPGSSGGGGFFSSLSNA 83
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 37.0 bits (84), Expect = 0.004
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 4 SSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAG--RAPRGLDMSAQEPPQGR 61
++ P G ++ P GP PAAR PA+ S P AG +A R +S PP+
Sbjct: 522 AAPPTQGQGRQSRPVAGGPGAPPAARPPASPS---PQRQAGPPQATRQTSVSGPAPPKAS 578
Query: 62 RFPIEAGDSRGLAAAPESQDSPEAVATEHNPV 93
P +G P P A++ PV
Sbjct: 579 GAPPGGQQRQGPPQKPPGPAGPTRQASQAGPV 610
Score = 33.1 bits (74), Expect = 0.059
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 3 PSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRA 46
P +TPGPG AT + P SPAA +P ++ G S+ A
Sbjct: 40 PGATPGPGTATAERSSGVAPAASPAAPSPGSSGGGGFFSSLSNA 83
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 36.6 bits (83), Expect = 0.005
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 7 PGPG-------HATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQ 59
PGPG H T P P P+ P AP ++ + + P A++PP
Sbjct: 1253 PGPGSPEVKRAHGT---PPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPA 1309
Query: 60 GRRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLR 97
P G L A+P SP A A H P +P R
Sbjct: 1310 ALAKP--PGTPPSLGASPAKPPSPGAPAL-HVPAKPPR 1344
Score = 26.2 bits (56), Expect = 7.2
Identities = 33/127 (25%), Positives = 43/127 (33%), Gaps = 15/127 (11%)
Query: 2 LPSSTPGPGHATETCPAPPGPERSPAARA--PAAASSLGPVSTAGRAPRGLDMSAQEPPQ 59
LPS + GP PAP + PAA A P SLG +P + P
Sbjct: 1290 LPSGSAGPS------PAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKP- 1342
Query: 60 GRRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCPGCHCLTLLHVPIDVYLAMG 119
P A + AAAP + PE + + + L C L V +
Sbjct: 1343 ----PRAAAAAAAAAAAPPA--PPEGASPGDSARQKLEETSACLAAALQAVEEKIRQEDA 1396
Query: 120 GSPRARA 126
PR A
Sbjct: 1397 QGPRDSA 1403
>gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens]
Length = 1024
Score = 36.6 bits (83), Expect = 0.005
Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 3 PSSTPGPGHATETCPAPPGPERSPAARAPAA---------ASSLGPVSTAGRAPRGLDMS 53
P T P E P PP P P A AP A +++ GP + G +
Sbjct: 432 PGPTQSPFFTFELPPQPPAPRPDPPAPAPLAPLEPDSGTSSAADGPWTQRGEEEEAEARA 491
Query: 54 AQEPPQGRRFPIEAGDSRGLAAAPESQDSP 83
P + P + DS GL AAP + P
Sbjct: 492 KLAPGREPPSPCHSEDSLGLGAAPLGSEPP 521
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 36.2 bits (82), Expect = 0.007
Identities = 23/62 (37%), Positives = 25/62 (40%)
Query: 8 GPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQGRRFPIEA 67
G G A PGP SPA AP P STAGR PR + A E +
Sbjct: 237 GSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRR 296
Query: 68 GD 69
GD
Sbjct: 297 GD 298
Score = 28.1 bits (61), Expect = 1.9
Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 3 PSSTPGPGHATETCPAP-PGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQGR 61
P S P P PAP PGP +P AR PA S GP GRA + P Q
Sbjct: 194 PKSQP-PLPQETAAPAPQPGPT-APPARPPAYESREGP---RGRA----ESRGSGPAQPA 244
Query: 62 RFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRP 95
P+ APE ++ +T RP
Sbjct: 245 HLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRP 278
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 36.2 bits (82), Expect = 0.007
Identities = 23/62 (37%), Positives = 25/62 (40%)
Query: 8 GPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQGRRFPIEA 67
G G A PGP SPA AP P STAGR PR + A E +
Sbjct: 237 GSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRR 296
Query: 68 GD 69
GD
Sbjct: 297 GD 298
Score = 28.1 bits (61), Expect = 1.9
Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 3 PSSTPGPGHATETCPAP-PGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQGR 61
P S P P PAP PGP +P AR PA S GP GRA + P Q
Sbjct: 194 PKSQP-PLPQETAAPAPQPGPT-APPARPPAYESREGP---RGRA----ESRGSGPAQPA 244
Query: 62 RFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRP 95
P+ APE ++ +T RP
Sbjct: 245 HLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRP 278
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 36.2 bits (82), Expect = 0.007
Identities = 23/62 (37%), Positives = 25/62 (40%)
Query: 8 GPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQGRRFPIEA 67
G G A PGP SPA AP P STAGR PR + A E +
Sbjct: 237 GSGPAQPAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRR 296
Query: 68 GD 69
GD
Sbjct: 297 GD 298
Score = 28.1 bits (61), Expect = 1.9
Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 3 PSSTPGPGHATETCPAP-PGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQGR 61
P S P P PAP PGP +P AR PA S GP GRA + P Q
Sbjct: 194 PKSQP-PLPQETAAPAPQPGPT-APPARPPAYESREGP---RGRA----ESRGSGPAQPA 244
Query: 62 RFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRP 95
P+ APE ++ +T RP
Sbjct: 245 HLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRP 278
>gi|27544941 myosin IF [Homo sapiens]
Length = 1098
Score = 36.2 bits (82), Expect = 0.007
Identities = 32/111 (28%), Positives = 40/111 (36%), Gaps = 8/111 (7%)
Query: 17 PAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEP-PQGRRFPIEAGDSRGLAA 75
P P R A+ SS P A PRG+D + P +G P+E G
Sbjct: 920 PKSSKPTRKGMAKGKPRRSSQAPTRAAPAPPRGMDRNGVPPSARGGPLPLEIMSGGGTHR 979
Query: 76 APESQDSPEAVATEHNPVRPLRRCPGCHCLTLLHVPIDVYLAMGGSPRARA 126
P S A+ RP R P H L+VP M G R R+
Sbjct: 980 PPRGPPSTSLGASR----RPRARPPSEHNTEFLNVPDQ---GMAGMQRKRS 1023
>gi|60498978 elastin microfibril interfacer 2 [Homo sapiens]
Length = 1053
Score = 36.2 bits (82), Expect = 0.007
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 3 PSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRA--PRGLDMSAQEPPQG 60
P GP A + P P+R P R P S G ++ G+A P G +S + P+G
Sbjct: 808 PPRPSGPATAEDPGRRPVLPQRPPEERPPQPPGSTGVIAETGQAGPPAGAGVSGRGLPRG 867
Query: 61 RRFPIEAG---DSRGLAAAPESQDSPEAVATEHNPVRPL 96
+G + G A AP SP VA+ PV L
Sbjct: 868 VDGQTGSGTVPGAEGFAGAPGYPKSP-PVASPGAPVPSL 905
>gi|46358366 zinc finger protein 746 [Homo sapiens]
Length = 644
Score = 36.2 bits (82), Expect = 0.007
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 4 SSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRG 49
+ TP G T PAPP P +SPA++ P A++ L T G + G
Sbjct: 592 AKTPARGQPLPTPPAPPDPFKSPASKGPLASTDLVTDWTCGLSVLG 637
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 35.8 bits (81), Expect = 0.009
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 1 MLPSSTP-GPGH------ATETCPAPPGPERSPAA-RAPAAASSLGPVSTAGRAPRGLDM 52
++PSS P GP ++ P PGP SP A RAP A +S S A PRG D
Sbjct: 118 LMPSSAPRGPTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGRDG 177
Query: 53 SAQE-----PPQGRRFPIEAGDSRGLAAAPESQDSPEA 85
+ PP+ +R + RG A + +D +A
Sbjct: 178 GPRREEDDVPPEEKRLRLLL--ERGSAQPEDCEDGEDA 213
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 35.4 bits (80), Expect = 0.012
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 1 MLPSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGR--APRGLDMSAQEP- 57
+ P GP PAPP SP APA +L P S++ AP + P
Sbjct: 1734 LAPGPPLGPTQTLSLAPAPPLAPASPVGPAPAHTLTLAPASSSASLLAPASVQTLTLSPA 1793
Query: 58 PQGRRFPIEAGDSRGLAAAPESQDSPEAVAT 88
P P A + LA AP S SP + A+
Sbjct: 1794 PVPTLGPAAA---QTLALAPASTQSPASQAS 1821
Score = 26.2 bits (56), Expect = 7.2
Identities = 30/115 (26%), Positives = 39/115 (33%), Gaps = 17/115 (14%)
Query: 2 LPSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQGR 61
+P S+ P T PAP + AP S+ GP P + P
Sbjct: 1433 VPLSSSLPISVPTTLPAPASAPLTIPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPS 1492
Query: 62 RFPIEAGDSR-----GLAAAPESQDSPEAVATEHNPVRPLRRCPGCHCLTLLHVP 111
P A S GLA AP ++++ P PL P T HVP
Sbjct: 1493 LAPSGASPSASALTLGLATAP-------SLSSSQTPGHPLLLAP-----TSSHVP 1535
Score = 26.2 bits (56), Expect = 7.2
Identities = 38/124 (30%), Positives = 43/124 (34%), Gaps = 41/124 (33%)
Query: 1 MLPSSTPG-----------------PGHATETCPAP-PGPERSPA-----ARAPAAASSL 37
M PSSTPG P PAP P P SPA A APA A +L
Sbjct: 1632 MAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLPSPASTQTLALAPALAPTL 1691
Query: 38 GPVSTAGRAPRGLDMSAQEPPQGRRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLR 97
G G +P PQG FP + L+ P S P P + L
Sbjct: 1692 G-----GSSPSQTLSLGTGNPQG-PFPTQT-----LSLTPASSLVP-------TPAQTLS 1733
Query: 98 RCPG 101
PG
Sbjct: 1734 LAPG 1737
>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform a [Homo sapiens]
Length = 1214
Score = 35.4 bits (80), Expect = 0.012
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 3 PSSTPGPGHATETCPAPPGP--------ERSPAARAPAAASSLGPVSTAGRAPRGLDMSA 54
P+ P PG P PPGP +++P + P A G AG AP GL
Sbjct: 1027 PAGAPQPGAVPPGVP-PPGPHGPSPFPNQQTPPSMMPGAVPGSGHPGVAGNAPLGLPFGM 1085
Query: 55 QEPP 58
PP
Sbjct: 1086 PPPP 1089
Score = 27.3 bits (59), Expect = 3.2
Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 1 MLPSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQG 60
M+P + PG GH AP G P A S+ P G + ++ PP
Sbjct: 1060 MMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPPPAPSIIPF---GSLADSISINLPAPPNL 1116
Query: 61 RRFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRP 95
G L AP + P + NP+ P
Sbjct: 1117 H------GHHHHLPFAPGTLPPPNLPVSMANPLHP 1145
Score = 26.2 bits (56), Expect = 7.2
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 3 PSSTPGPGHATETCPAPPGPERSPAARAPAAA------SSLGPVSTAGRAPRGLDMSAQE 56
P S P P PA G +PA+ PA A SLGP G+A Q+
Sbjct: 967 PGSQPIPPTGAAGPPAVHGLAVAPASVVPAPAGSGAPPGSLGPSEQIGQAGSTAGPQQQQ 1026
Query: 57 P---PQGRRFP--IEAGDSRGLAAAPESQDSP 83
P PQ P + G + P Q P
Sbjct: 1027 PAGAPQPGAVPPGVPPPGPHGPSPFPNQQTPP 1058
>gi|171906567 peripheral benzodiazepine receptor-associated protein 1
isoform b [Homo sapiens]
Length = 1797
Score = 35.4 bits (80), Expect = 0.012
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 3 PSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPP 58
P+ P A +CP+P SP ARAP A++S GP + + QEPP
Sbjct: 1016 PALAPASLPARVSCPSP---HPSPEARAPLASASPGPGDPSSPLQHPAPLGTQEPP 1068
>gi|171906559 peripheral benzodiazepine receptor-associated protein 1
isoform a [Homo sapiens]
Length = 1857
Score = 35.4 bits (80), Expect = 0.012
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 3 PSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPP 58
P+ P A +CP+P SP ARAP A++S GP + + QEPP
Sbjct: 1076 PALAPASLPARVSCPSP---HPSPEARAPLASASPGPGDPSSPLQHPAPLGTQEPP 1128
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 35.4 bits (80), Expect = 0.012
Identities = 36/98 (36%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 9 PGHATETCPAPP-GPERSPAARA-------PAAASSLGPVSTAG--RAPRGLDMSAQEPP 58
P T PAPP P +PAA A PA PV+ A RAPR +A PP
Sbjct: 101 PPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPP 160
Query: 59 Q-GRRFP-IEAGDSRGLAAAPESQDSPEAVATEHNPVR 94
G P A + LAA P + +P AVA P R
Sbjct: 161 SPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRR 198
Score = 31.6 bits (70), Expect = 0.17
Identities = 31/99 (31%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
Query: 3 PSSTPGPGHATETCPAPPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQG-R 61
P+ P A T P PGP + P RA AA P P A PP G R
Sbjct: 145 PARAPRAAAAAATAPPSPGPAQ-PGPRAQRAAPLAAPPPAPAAPP------AVAPPAGPR 197
Query: 62 RFPIEAGDSRGLAAAPESQDSPEAVATEHNPVRPLRRCP 100
R P A +R P Q P A + P P + P
Sbjct: 198 RAPPPAVAAREPPLPPPPQ--PPAPPQQQQPPPPQPQPP 234
Score = 29.3 bits (64), Expect = 0.85
Identities = 27/84 (32%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 7 PGPG--HATETCPAPPGPERSPAARAPAAASSLGPVSTAGR--------APRGLDMSAQE 56
PGP A PP P PA PA P + A R P Q
Sbjct: 167 PGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQP 226
Query: 57 PPQGRRFPIEAGDSR-GLAAAPES 79
PP + P E G R G AA P S
Sbjct: 227 PPPQPQPPPEGGAVRAGGAARPVS 250
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 35.0 bits (79), Expect = 0.016
Identities = 22/49 (44%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 7 PGPGHA-----TETCPAPPGPERSPAARAPAAASSLGPVSTAGR-APRG 49
PGP A E P PPGP SP R PA A+ GP+ GR P+G
Sbjct: 1065 PGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAA--GPIGIPGRPGPQG 1111
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 35.0 bits (79), Expect = 0.016
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 6 TPGPGHATETCPAP-PGPERSPA-ARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQ 59
TP P A + PAP P P +P A APA++S + A AP SAQ P Q
Sbjct: 16 TPVPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPGQTPASAQAPAQ 71
Score = 28.9 bits (63), Expect = 1.1
Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 12 ATETCP--APPGPERSPAARAPAAASSLGPVSTAGRAPRGLDMSAQEPPQGRRFPIEAGD 69
AT P APP A APA+ + P A P S+ +P G
Sbjct: 2 ATPAVPVSAPPATPTPVPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPGQ 61
Query: 70 SRGLAAAPESQDSP 83
+ A AP +P
Sbjct: 62 TPASAQAPAQTPAP 75
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,280,990
Number of Sequences: 37866
Number of extensions: 436790
Number of successful extensions: 5419
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 797
Number of HSP's that attempted gapping in prelim test: 3683
Number of HSP's gapped (non-prelim): 2318
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.