Guide to the Human Genome
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Name: LOC100129196 Sequence: fasta or formatted (122aa) NCBI GI: 169161244
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {122aa} PREDICTED: hypothetical protein
alt prot {86aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         12           2
 C cysteine            3.3          4           1
 D aspartate           4.1          5           1
 E glutamate           2.5          3           1
 F phenylalanine       1.6          2           1
 G glycine            10.7         13           3
 H histidine           2.5          3           1
 I isoleucine          2.5          3           1
 K lysine              3.3          4           2
 L leucine             9.8         12           2
 M methionine          3.3          4           1
 N asparagine          0.0          0           0
 P proline            12.3         15           1
 Q glutamine           4.9          6           1
 R arginine           10.7         13           1
 S serine              4.1          5           1
 T threonine           3.3          4           1
 V valine              9.8         12           2
 W tryptophan          1.6          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129196          1.000   PREDICTED: hypothetical protein 
C10orf105             0.022   PREDICTED: chromosome 10 open reading frame 105 [Ho...
C10orf105             0.022   PREDICTED: chromosome 10 open reading frame 105 [Ho...
C10orf105             0.022   PREDICTED: chromosome 10 open reading frame 105 [Ho...
NTN5                  0.017   netrin 5 
SOCS7                 0.017   suppressor of cytokine signaling 7 
EFHA1                 0.013   EF-hand domain family, member A1 
TRIM68                0.009   ring finger protein 137 
C15orf17              0.009   hypothetical protein LOC57184 
FAM89A                0.009   family with sequence similarity 89, member A 
RASSF10               0.009   Ras association (RalGDS/AF-6) domain family (N-term...
LOC100134152          0.004   PREDICTED: similar to synaptotagmin XV-b 
LOC100292427          0.004   PREDICTED: hypothetical protein 
LOC100133655          0.004   PREDICTED: hypothetical protein 
MYO9B                 0.004   myosin IXB isoform 2 
MYO9B                 0.004   myosin IXB isoform 1 
GPHN                  0.004   gephyrin isoform 1 
GPHN                  0.004   gephyrin isoform 2 
LOC100292008          0.004   PREDICTED: similar to ZNF668 protein 
LOC100291370          0.004   PREDICTED: hypothetical protein XP_002347637 
LOC645249             0.004   PREDICTED: hypothetical protein 
LOC100287385          0.004   PREDICTED: hypothetical protein XP_002343487 
LOC645249             0.004   PREDICTED: hypothetical protein 
LOC645249             0.004   PREDICTED: hypothetical protein 
SEMA3F                0.004   semaphorin 3F 
CEP97                 0.004   centrosomal protein 97kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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