Guide to the Human Genome
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Name: LOC100129196 Sequence: fasta or formatted (86aa) NCBI GI: 239752782
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {122aa} PREDICTED: hypothetical protein
alt prot {122aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.0         12           2
 C cysteine            1.2          1           1
 D aspartate           2.3          2           1
 E glutamate           4.7          4           1
 F phenylalanine       0.0          0           0
 G glycine             7.0          6           1
 H histidine           1.2          1           1
 I isoleucine          5.8          5           1
 K lysine              3.5          3           1
 L leucine             7.0          6           2
 M methionine          5.8          5           1
 N asparagine          3.5          3           1
 P proline             8.1          7           2
 Q glutamine           0.0          0           0
 R arginine            9.3          8           2
 S serine             12.8         11           2
 T threonine           4.7          4           1
 V valine              5.8          5           1
 W tryptophan          3.5          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290848          1.000   PREDICTED: hypothetical protein XP_002346422 
LOC100288680          1.000   PREDICTED: hypothetical protein XP_002342130 
RASIP1                0.027   Ras-interacting protein 1 
HTR6                  0.013   5-hydroxytryptamine (serotonin) receptor 6 
DSCAML1               0.013   Down syndrome cell adhesion molecule like 1 
HIF3A                 0.007   hypoxia inducible factor 3, alpha subunit isoform b ...
HIF3A                 0.007   hypoxia inducible factor 3, alpha subunit isoform a ...
HIF3A                 0.007   hypoxia inducible factor 3, alpha subunit isoform c ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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