Guide to the Human Genome
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Name: EFHA1 Sequence: fasta or formatted (434aa) NCBI GI: 22749443
Description:

EF-hand domain family, member A1

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         34           4
 C cysteine            1.2          5           1
 D aspartate           4.1         18           2
 E glutamate           8.1         35           2
 F phenylalanine       7.6         33           2
 G glycine             7.1         31           2
 H histidine           3.0         13           2
 I isoleucine          4.6         20           2
 K lysine              8.8         38           2
 L leucine             8.8         38           2
 M methionine          3.5         15           1
 N asparagine          2.5         11           2
 P proline             1.8          8           1
 Q glutamine           4.6         20           1
 R arginine            5.8         25           2
 S serine              6.5         28           2
 T threonine           5.3         23           2
 V valine              5.3         23           1
 W tryptophan          1.6          7           1
 Y tyrosine            2.1          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   EF-hand domain family, member A1 
EFHA2                 0.302   EF-hand domain family, member A2 
CBARA1                0.132   calcium binding atopy-related autoantigen 1 
SLC25A12              0.042   solute carrier family 25, member 12 
SLC25A13              0.032   solute carrier family 25, member 13 isoform 2 
SLC25A13              0.032   solute carrier family 25, member 13 isoform 1 [Homo...
RCVRN                 0.015   recoverin 
DUOX1                 0.014   dual oxidase 1 precursor 
DUOX1                 0.014   dual oxidase 1 precursor 
LPCAT2                0.012   lysophosphatidylcholine acyltransferase 2 
CHP                   0.009   calcium binding protein P22 
DUOX2                 0.009   dual oxidase 2 precursor 
EID2                  0.009   CREBBP/EP300 inhibitor 2 
CABP2                 0.009   calcium binding protein 2 isoform 2 
CABP2                 0.009   calcium binding protein 2 isoform 1 
NCALD                 0.009   neurocalcin delta 
NCALD                 0.009   neurocalcin delta 
NCALD                 0.009   neurocalcin delta 
NCALD                 0.009   neurocalcin delta 
NCALD                 0.009   neurocalcin delta 
NCALD                 0.009   neurocalcin delta 
NCALD                 0.009   neurocalcin delta 
NCALD                 0.009   neurocalcin delta 
CALML3                0.008   calmodulin-like 3 
HPCAL1                0.008   hippocalcin-like 1 
HPCAL1                0.008   hippocalcin-like 1 
RASGRP2               0.008   RAS guanyl releasing protein 2 
RASGRP2               0.008   RAS guanyl releasing protein 2 
RASGRP2               0.008   RAS guanyl releasing protein 2 
HPCA                  0.008   hippocalcin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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