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Search of human proteins with 169161244
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169161244 PREDICTED: hypothetical protein [Homo sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169161541 PREDICTED: hypothetical protein [Homo sapiens] 256 4e-69
gi|169161244 PREDICTED: hypothetical protein [Homo sapiens] 256 4e-69
gi|169184513 PREDICTED: chromosome 10 open reading frame 105 [Ho... 30 0.58
gi|239749818 PREDICTED: chromosome 10 open reading frame 105 [Ho... 30 0.58
gi|239744108 PREDICTED: chromosome 10 open reading frame 105 [Ho... 30 0.58
gi|24308065 netrin 5 [Homo sapiens] 29 0.76
gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens] 29 0.76
gi|22749443 EF-hand domain family, member A1 [Homo sapiens] 28 2.2
gi|37622899 ring finger protein 137 [Homo sapiens] 27 3.8
gi|33457346 hypothetical protein LOC57184 [Homo sapiens] 27 3.8
gi|38348390 family with sequence similarity 89, member A [Homo s... 27 4.9
gi|122937480 Ras association (RalGDS/AF-6) domain family (N-term... 27 4.9
gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo sapi... 26 6.5
gi|239754810 PREDICTED: hypothetical protein [Homo sapiens] 26 6.5
gi|169179422 PREDICTED: hypothetical protein [Homo sapiens] 26 6.5
gi|194272142 myosin IXB isoform 2 [Homo sapiens] 26 6.5
gi|33356170 myosin IXB isoform 1 [Homo sapiens] 26 6.5
gi|10880983 gephyrin isoform 1 [Homo sapiens] 26 6.5
gi|66932975 gephyrin isoform 2 [Homo sapiens] 26 6.5
gi|239756458 PREDICTED: similar to ZNF668 protein [Homo sapiens] 26 8.4
gi|239750986 PREDICTED: hypothetical protein XP_002347637 [Homo ... 26 8.4
gi|113419362 PREDICTED: hypothetical protein [Homo sapiens] 26 8.4
gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo ... 26 8.4
gi|113418886 PREDICTED: hypothetical protein [Homo sapiens] 26 8.4
gi|113419893 PREDICTED: hypothetical protein [Homo sapiens] 26 8.4
gi|188497703 semaphorin 3F [Homo sapiens] 26 8.4
gi|31377705 centrosomal protein 97kDa [Homo sapiens] 26 8.4
>gi|169161541 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 256 bits (653), Expect = 4e-69
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MPHRQIGVSKVRAMPSPQTEAAEGRVLRLMAVGVVPRPSCPREARPGLGGGIRWFHMVQF 60
MPHRQIGVSKVRAMPSPQTEAAEGRVLRLMAVGVVPRPSCPREARPGLGGGIRWFHMVQF
Sbjct: 1 MPHRQIGVSKVRAMPSPQTEAAEGRVLRLMAVGVVPRPSCPREARPGLGGGIRWFHMVQF 60
Query: 61 CALATRWQPKLRDGAAVSRLAVLVPVRPGTLDQGTDGGPLPCGCPRDQPKKDAALILLHS 120
CALATRWQPKLRDGAAVSRLAVLVPVRPGTLDQGTDGGPLPCGCPRDQPKKDAALILLHS
Sbjct: 61 CALATRWQPKLRDGAAVSRLAVLVPVRPGTLDQGTDGGPLPCGCPRDQPKKDAALILLHS 120
Query: 121 PV 122
PV
Sbjct: 121 PV 122
>gi|169161244 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 256 bits (653), Expect = 4e-69
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MPHRQIGVSKVRAMPSPQTEAAEGRVLRLMAVGVVPRPSCPREARPGLGGGIRWFHMVQF 60
MPHRQIGVSKVRAMPSPQTEAAEGRVLRLMAVGVVPRPSCPREARPGLGGGIRWFHMVQF
Sbjct: 1 MPHRQIGVSKVRAMPSPQTEAAEGRVLRLMAVGVVPRPSCPREARPGLGGGIRWFHMVQF 60
Query: 61 CALATRWQPKLRDGAAVSRLAVLVPVRPGTLDQGTDGGPLPCGCPRDQPKKDAALILLHS 120
CALATRWQPKLRDGAAVSRLAVLVPVRPGTLDQGTDGGPLPCGCPRDQPKKDAALILLHS
Sbjct: 61 CALATRWQPKLRDGAAVSRLAVLVPVRPGTLDQGTDGGPLPCGCPRDQPKKDAALILLHS 120
Query: 121 PV 122
PV
Sbjct: 121 PV 122
>gi|169184513 PREDICTED: chromosome 10 open reading frame 105 [Homo
sapiens]
Length = 133
Score = 29.6 bits (65), Expect = 0.58
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 69 PKLRDGAAVSRLAVL-VPVRPGTLDQGTDGGPLP 101
P L A+S LA L PV PGTL + TD PLP
Sbjct: 6 PSLASSPAISPLAFLSAPVTPGTLAEATD--PLP 37
>gi|239749818 PREDICTED: chromosome 10 open reading frame 105 [Homo
sapiens]
Length = 133
Score = 29.6 bits (65), Expect = 0.58
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 69 PKLRDGAAVSRLAVL-VPVRPGTLDQGTDGGPLP 101
P L A+S LA L PV PGTL + TD PLP
Sbjct: 6 PSLASSPAISPLAFLSAPVTPGTLAEATD--PLP 37
>gi|239744108 PREDICTED: chromosome 10 open reading frame 105 [Homo
sapiens]
Length = 133
Score = 29.6 bits (65), Expect = 0.58
Identities = 18/34 (52%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 69 PKLRDGAAVSRLAVL-VPVRPGTLDQGTDGGPLP 101
P L A+S LA L PV PGTL + TD PLP
Sbjct: 6 PSLASSPAISPLAFLSAPVTPGTLAEATD--PLP 37
>gi|24308065 netrin 5 [Homo sapiens]
Length = 489
Score = 29.3 bits (64), Expect = 0.76
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 74 GAAVSRLAVLV---------PVRPGTLDQGTDGGPLPCGCPRDQPKKDAALI 116
G A RLAV V PVR G D L CGC R QP D L+
Sbjct: 381 GPAWQRLAVRVLAVYKQRAQPVRRGDQDAWVPRADLTCGCLRLQPGTDYLLL 432
>gi|53831997 suppressor of cytokine signaling 7 [Homo sapiens]
Length = 581
Score = 29.3 bits (64), Expect = 0.76
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 18/77 (23%)
Query: 36 PRPSC---PREARPGLGGGIRWFHMVQFCALATRWQPKLRDGAAVSRLAVLVPVRPGTLD 92
PR C P+ PGL AL W P A ++ L + P PG
Sbjct: 29 PRHRCALDPKALPPGL-------------ALERTWGPAAGLEAQLAALGLGQPAGPGVKT 75
Query: 93 QGTDGGPLPCGCPRDQP 109
G GG PC CP P
Sbjct: 76 VG--GGCCPCPCPPQPP 90
>gi|22749443 EF-hand domain family, member A1 [Homo sapiens]
Length = 434
Score = 27.7 bits (60), Expect = 2.2
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 61 CALATRWQPKLRDGAAVSRLAVLVP 85
CA W KLR G AVSR AV P
Sbjct: 8 CARVAAWGGKLRRGLAVSRQAVRSP 32
>gi|37622899 ring finger protein 137 [Homo sapiens]
Length = 485
Score = 26.9 bits (58), Expect = 3.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 2 PHRQIGVSKVRAMPSPQTEAAE 23
PHRQ+G A+ S Q EAAE
Sbjct: 201 PHRQLGAEVAAALASLQREAAE 222
>gi|33457346 hypothetical protein LOC57184 [Homo sapiens]
Length = 198
Score = 26.9 bits (58), Expect = 3.8
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 19 TEAAEGRVLRLMAVGVVPRPSCPREARPGLGG 50
T GR LRL G PRPS R+ PG G
Sbjct: 3 TAEPSGRALRLSTPG--PRPSGARDRAPGAAG 32
>gi|38348390 family with sequence similarity 89, member A [Homo
sapiens]
Length = 184
Score = 26.6 bits (57), Expect = 4.9
Identities = 34/114 (29%), Positives = 40/114 (35%), Gaps = 24/114 (21%)
Query: 8 VSKVRAMPSPQTEAAEGRVLRLMAVGVVPRP-SCPREARPGLGGGIR--WFHMVQFCALA 64
+S RA P A G V L G+ P P S GGG W H+ + A
Sbjct: 1 MSGARAAPGA---AGNGAVRGLRVDGLPPLPKSLSGLLHSASGGGASGGWRHLERLYAQK 57
Query: 65 TRWQPKLRDGAAVSRLAVLVPVRPGTLDQGTDGGPLPCGCPRDQPKKDAALILL 118
+R Q +L G PG GG P P DAAL LL
Sbjct: 58 SRIQDELSRGG------------PG------GGGARAAALPAKPPNLDAALALL 93
>gi|122937480 Ras association (RalGDS/AF-6) domain family
(N-terminal) member 10 [Homo sapiens]
Length = 615
Score = 26.6 bits (57), Expect = 4.9
Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 19/102 (18%)
Query: 28 RLMAVGVVPRPSCPREARPGLGGGIRWFHMVQFCALATR--W----------------QP 69
RL G+ P P GLGGG W H+ + +R W +P
Sbjct: 14 RLRGAGLGPEPPALPATALGLGGGKGWSHVGRSKTRRSRAPWAEPERREPVLGALPRERP 73
Query: 70 KLRDGAAVSRLAVLVPVRPGTLDQGTDGGPLPCGCPRDQPKK 111
AA + V +P D G P GC D +K
Sbjct: 74 SSGQSAAATATTAAVAFQPAFADPGRTCHLRP-GCAMDPSEK 114
>gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo
sapiens]
Length = 267
Score = 26.2 bits (56), Expect = 6.5
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 1 MPHRQIGVSKVRAMPSPQTEAAEGRVLRLMAVGVVPRPSCPREARPGLG 49
+P Q+G S P + A G + G+ +P PR ARP G
Sbjct: 149 LPAPQLGTSSTTDRPCARPTAPRGA----LRDGLAAQPQPPRPARPACG 193
>gi|239754810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 421
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 65 TRWQPKLRDGAAVSRLAVLVPVRPGTLDQG-TDGGPLP 101
+RW P +DG ++++ P ++ G DG PLP
Sbjct: 50 SRWSPPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPLP 87
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 65 TRWQPKLRDGAAVSRLAVLVPVRPGTLDQG-TDGGPLP 101
+RW P +DG ++++ P ++ G DG PLP
Sbjct: 96 SRWSPPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPLP 133
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 65 TRWQPKLRDGAAVSRLAVLVPVRPGTLDQG-TDGGPLP 101
+RW P +DG ++++ P ++ G DG PLP
Sbjct: 142 SRWSPPPQDGQCTPEISMVTPSPGWSVHTGDLDGHPLP 179
>gi|169179422 PREDICTED: hypothetical protein [Homo sapiens]
Length = 645
Score = 26.2 bits (56), Expect = 6.5
Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 38 PSCPREARPGLGGGIRWFHMVQFCALA-----TRWQPKLRDGAAVSRLAVLVPVRPGTLD 92
P P AR GLG G+R H L+ + W L D AA + L LVP P
Sbjct: 505 PGVPLGARTGLGAGVRQ-HPGGIAGLSRERGHSPW-AALTDSAAGAELPGLVPSAPRRPG 562
Query: 93 QGTDGGPL 100
T PL
Sbjct: 563 SATAPRPL 570
>gi|194272142 myosin IXB isoform 2 [Homo sapiens]
Length = 2022
Score = 26.2 bits (56), Expect = 6.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 85 PVRPGTLDQGTDGGPLPCGCPRDQPKKDA 113
P PG+ + + PCG PR Q K D+
Sbjct: 1262 PPAPGSAPETPEDKSKPCGSPRVQEKPDS 1290
>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
Length = 2157
Score = 26.2 bits (56), Expect = 6.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 85 PVRPGTLDQGTDGGPLPCGCPRDQPKKDA 113
P PG+ + + PCG PR Q K D+
Sbjct: 1262 PPAPGSAPETPEDKSKPCGSPRVQEKPDS 1290
>gi|10880983 gephyrin isoform 1 [Homo sapiens]
Length = 769
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 86 VRPGTLDQGTDGGPLPCGCPRDQPKKDAALI 116
V PG + + T G P+PCG +D LI
Sbjct: 436 VMPGQVMRVTTGAPIPCGADAVVQVEDTELI 466
>gi|66932975 gephyrin isoform 2 [Homo sapiens]
Length = 736
Score = 26.2 bits (56), Expect = 6.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 86 VRPGTLDQGTDGGPLPCGCPRDQPKKDAALI 116
V PG + + T G P+PCG +D LI
Sbjct: 403 VMPGQVMRVTTGAPIPCGADAVVQVEDTELI 433
>gi|239756458 PREDICTED: similar to ZNF668 protein [Homo sapiens]
Length = 377
Score = 25.8 bits (55), Expect = 8.4
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 10 KVRAMPSPQTEAAEGRVLRLMAV---GVVPRPSCP-REARP-GLG 49
K R++PS T G +L MAV G P CP R RP GLG
Sbjct: 109 KARSLPSHSTVHKNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLG 153
>gi|239750986 PREDICTED: hypothetical protein XP_002347637 [Homo
sapiens]
Length = 377
Score = 25.8 bits (55), Expect = 8.4
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 10 KVRAMPSPQTEAAEGRVLRLMAV---GVVPRPSCP-REARP-GLG 49
K R++PS T G +L MAV G P CP R RP GLG
Sbjct: 109 KARSLPSHSTVHKNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLG 153
>gi|113419362 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 25.8 bits (55), Expect = 8.4
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 36 PRPS-----CPREARPGLGGGIRWFHMVQFCALATRWQPKLRDGAAVSRLAVLVPVRP 88
PRP PRE P G G CA A P G+A+ R A L P RP
Sbjct: 10 PRPGPRSHKLPRECFPASGPG-----SPVLCAAALSGGPGRAAGSAIGRGAHLSPSRP 62
>gi|239745391 PREDICTED: hypothetical protein XP_002343487 [Homo
sapiens]
Length = 417
Score = 25.8 bits (55), Expect = 8.4
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 10 KVRAMPSPQTEAAEGRVLRLMAV---GVVPRPSCP-REARP-GLG 49
K R++PS T G +L MAV G P CP R RP GLG
Sbjct: 149 KARSLPSHSTVHKNGGLLTAMAVLLLGNRRPPPCPHRRGRPRGLG 193
>gi|113418886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 25.8 bits (55), Expect = 8.4
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 36 PRPS-----CPREARPGLGGGIRWFHMVQFCALATRWQPKLRDGAAVSRLAVLVPVRP 88
PRP PRE P G G CA A P G+A+ R A L P RP
Sbjct: 10 PRPGPRSHKLPRECFPASGPG-----SPVLCAAALSGGPGRAAGSAIGRGAHLSPSRP 62
>gi|113419893 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 25.8 bits (55), Expect = 8.4
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 36 PRPS-----CPREARPGLGGGIRWFHMVQFCALATRWQPKLRDGAAVSRLAVLVPVRP 88
PRP PRE P G G CA A P G+A+ R A L P RP
Sbjct: 10 PRPGPRSHKLPRECFPASGPG-----SPVLCAAALSGGPGRAAGSAIGRGAHLSPSRP 62
>gi|188497703 semaphorin 3F [Homo sapiens]
Length = 785
Score = 25.8 bits (55), Expect = 8.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 10 KVRAMPSPQTEAAEGRVLRLMAVGVVPRPSCPRE 43
+ +A P QT+A GR R + P P+ PR+
Sbjct: 150 RAQATPWTQTQAVRGRGSRATDGALRPMPTAPRQ 183
>gi|31377705 centrosomal protein 97kDa [Homo sapiens]
Length = 865
Score = 25.8 bits (55), Expect = 8.4
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 71 LRDGAAVSRLAVLVPVRPGTLDQGTDGGPLPCGCPRDQPKKDAALILLH 119
L DGA+V + P G + Q + L QP+ D+ LLH
Sbjct: 812 LSDGASVDESHGISPPLQGEISQTQENSKLNAEVQGQQPECDSTFQLLH 860
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.140 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,612,190
Number of Sequences: 37866
Number of extensions: 270387
Number of successful extensions: 744
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 29
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.