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Search of human proteins with 110611246
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110611246 xylosyltransferase II [Homo sapiens]
(865 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110611246 xylosyltransferase II [Homo sapiens] 1786 0.0
gi|28269693 xylosyltransferase I [Homo sapiens] 951 0.0
gi|4503963 glucosaminyl (N-acetyl) transferase 2, I-branching en... 85 3e-16
gi|85790495 glucosaminyl (N-acetyl) transferase 2, I-branching e... 84 6e-16
gi|21717810 glucosaminyl (N-acetyl) transferase 2, I-branching e... 82 3e-15
gi|7706127 core 2 beta-1,6-N-acetylglucosaminyltransferase 3 [Ho... 80 6e-15
gi|148277035 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,... 75 2e-13
gi|148277033 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,... 75 2e-13
gi|148277031 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,... 75 2e-13
gi|148277029 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,... 75 2e-13
gi|21614523 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6... 75 2e-13
gi|4758422 glucosaminyl (N-acetyl) transferase 3, mucin type [Ho... 75 3e-13
gi|190684701 glucosaminyl (N-acetyl) transferase family member 7... 71 4e-12
gi|239754233 PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H... 57 1e-07
gi|239748765 PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H... 57 1e-07
gi|239742810 PREDICTED: glucosaminyl (N-acetyl) transferase 6 [H... 57 1e-07
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 45 3e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 45 3e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 45 3e-04
gi|18641360 collectin sub-family member 12 [Homo sapiens] 39 0.016
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.021
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 39 0.021
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 39 0.021
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 39 0.021
gi|12751473 DNA cytosine methyltransferase 3 alpha isoform a [Ho... 39 0.027
gi|28559069 DNA cytosine methyltransferase 3 alpha isoform a [Ho... 39 0.027
gi|16579828 zinc finger protein 91 [Homo sapiens] 39 0.027
gi|48762934 alpha 2 type I collagen [Homo sapiens] 38 0.035
gi|156142197 euchromatic histone-lysine N-methyltransferase 2 is... 38 0.035
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 38 0.046
>gi|110611246 xylosyltransferase II [Homo sapiens]
Length = 865
Score = 1786 bits (4625), Expect = 0.0
Identities = 865/865 (100%), Positives = 865/865 (100%)
Query: 1 MVASARVQKLVRRYKLAIATALAILLLQGLVVWSFSGLEEDEAGEKGRQRKPRPLDPGEG 60
MVASARVQKLVRRYKLAIATALAILLLQGLVVWSFSGLEEDEAGEKGRQRKPRPLDPGEG
Sbjct: 1 MVASARVQKLVRRYKLAIATALAILLLQGLVVWSFSGLEEDEAGEKGRQRKPRPLDPGEG 60
Query: 61 SKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRAVTSRQRASRRVPPAPPPEAPGR 120
SKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRAVTSRQRASRRVPPAPPPEAPGR
Sbjct: 61 SKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRAVTSRQRASRRVPPAPPPEAPGR 120
Query: 121 QNLSGAAAGEALVGAAGFPPHGDTGSVEGAPQPTDNGFTPKCEIVGKDALSALARASTKQ 180
QNLSGAAAGEALVGAAGFPPHGDTGSVEGAPQPTDNGFTPKCEIVGKDALSALARASTKQ
Sbjct: 121 QNLSGAAAGEALVGAAGFPPHGDTGSVEGAPQPTDNGFTPKCEIVGKDALSALARASTKQ 180
Query: 181 CQQEIANVVCLHQAGSLMPKAVPRHCQLTGKMSPGIQWDESQAQQPMDGPPVRIAYMLVV 240
CQQEIANVVCLHQAGSLMPKAVPRHCQLTGKMSPGIQWDESQAQQPMDGPPVRIAYMLVV
Sbjct: 181 CQQEIANVVCLHQAGSLMPKAVPRHCQLTGKMSPGIQWDESQAQQPMDGPPVRIAYMLVV 240
Query: 241 HGRAIRQLKRLLKAVYHEQHFFYIHVDKRSDYLHREVVELAQGYDNVRVTPWRMVTIWGG 300
HGRAIRQLKRLLKAVYHEQHFFYIHVDKRSDYLHREVVELAQGYDNVRVTPWRMVTIWGG
Sbjct: 241 HGRAIRQLKRLLKAVYHEQHFFYIHVDKRSDYLHREVVELAQGYDNVRVTPWRMVTIWGG 300
Query: 301 ASLLRMYLRSMRDLLEVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRDKNFLKSHGRD 360
ASLLRMYLRSMRDLLEVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRDKNFLKSHGRD
Sbjct: 301 ASLLRMYLRSMRDLLEVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRDKNFLKSHGRD 360
Query: 361 NSRFIKKQGLDRLFHECDSHMWRLGERQIPAGIVVDGGSDWFVLTRSFVEYVVYTDDPLV 420
NSRFIKKQGLDRLFHECDSHMWRLGERQIPAGIVVDGGSDWFVLTRSFVEYVVYTDDPLV
Sbjct: 361 NSRFIKKQGLDRLFHECDSHMWRLGERQIPAGIVVDGGSDWFVLTRSFVEYVVYTDDPLV 420
Query: 421 AQLRQFYTYTLLPAESFFHTVLENSLACETLVDNNLRVTNWNRKLGCKCQYKHIVDWCGC 480
AQLRQFYTYTLLPAESFFHTVLENSLACETLVDNNLRVTNWNRKLGCKCQYKHIVDWCGC
Sbjct: 421 AQLRQFYTYTLLPAESFFHTVLENSLACETLVDNNLRVTNWNRKLGCKCQYKHIVDWCGC 480
Query: 481 SPNDFKPQDFLRLQQVSRPTFFARKFESTVNQEVLEILDFHLYGSYPPGTPALKAYWENT 540
SPNDFKPQDFLRLQQVSRPTFFARKFESTVNQEVLEILDFHLYGSYPPGTPALKAYWENT
Sbjct: 481 SPNDFKPQDFLRLQQVSRPTFFARKFESTVNQEVLEILDFHLYGSYPPGTPALKAYWENT 540
Query: 541 YDAADGPSGLSDVMLTAYTAFARLSLHHAATAAPPMGTPLCRFEPRGLPSSVHLYFYDDH 600
YDAADGPSGLSDVMLTAYTAFARLSLHHAATAAPPMGTPLCRFEPRGLPSSVHLYFYDDH
Sbjct: 541 YDAADGPSGLSDVMLTAYTAFARLSLHHAATAAPPMGTPLCRFEPRGLPSSVHLYFYDDH 600
Query: 601 FQGYLVTQAVQPSAQGPAETLEMWLMPQGSLKLLGRSDQASRLQSLEVGTDWDPKERLFR 660
FQGYLVTQAVQPSAQGPAETLEMWLMPQGSLKLLGRSDQASRLQSLEVGTDWDPKERLFR
Sbjct: 601 FQGYLVTQAVQPSAQGPAETLEMWLMPQGSLKLLGRSDQASRLQSLEVGTDWDPKERLFR 660
Query: 661 NFGGLLGPLDEPVAVQRWARGPNLTATVVWIDPTYVVATSYDITVDTETEVTQYKPPLSR 720
NFGGLLGPLDEPVAVQRWARGPNLTATVVWIDPTYVVATSYDITVDTETEVTQYKPPLSR
Sbjct: 661 NFGGLLGPLDEPVAVQRWARGPNLTATVVWIDPTYVVATSYDITVDTETEVTQYKPPLSR 720
Query: 721 PLRPGPWTVRLLQFWEPLGETRFLVLPLTFNRKLPLRKDDASWLHAGPPHNEYMEQSFQG 780
PLRPGPWTVRLLQFWEPLGETRFLVLPLTFNRKLPLRKDDASWLHAGPPHNEYMEQSFQG
Sbjct: 721 PLRPGPWTVRLLQFWEPLGETRFLVLPLTFNRKLPLRKDDASWLHAGPPHNEYMEQSFQG 780
Query: 781 LSSILNLPQPELAEEAAQRHTQLTGPALEAWTDRELSSFWSVAGLCAIGPSPCPSLEPCR 840
LSSILNLPQPELAEEAAQRHTQLTGPALEAWTDRELSSFWSVAGLCAIGPSPCPSLEPCR
Sbjct: 781 LSSILNLPQPELAEEAAQRHTQLTGPALEAWTDRELSSFWSVAGLCAIGPSPCPSLEPCR 840
Query: 841 LTSWSSLSPDPKSELGPVKADGRLR 865
LTSWSSLSPDPKSELGPVKADGRLR
Sbjct: 841 LTSWSSLSPDPKSELGPVKADGRLR 865
>gi|28269693 xylosyltransferase I [Homo sapiens]
Length = 959
Score = 951 bits (2459), Expect = 0.0
Identities = 451/755 (59%), Positives = 552/755 (73%), Gaps = 7/755 (0%)
Query: 114 PPEAPGRQNLSG--AAAGEALVGAAGFPPHG-DTGSVEGAPQPTDNGFTPKCEIVGKDAL 170
P + PG G AAA + PPH TG G+ T PKC+I GK+A+
Sbjct: 209 PGKGPGEVLPPGDRAAANSSHGKDVSRPPHARKTG---GSSPETKYDQPPKCDISGKEAI 265
Query: 171 SALARASTKQCQQEIANVVCLHQAGSLMPKAVPRHCQLTGKMSPGIQWDESQAQQPMDGP 230
SAL+RA +K C+QEI C H+ G LMP+ V R C L GK + +QWDE + M
Sbjct: 266 SALSRAKSKHCRQEIGETYCRHKLGLLMPEKVTRFCPLEGKANKNVQWDEDSVEY-MPAN 324
Query: 231 PVRIAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRSDYLHREVVELAQGYDNVRVT 290
PVRIA++LVVHGRA RQL+R+ KA+YH+ HF+YIHVDKRS+YLHR+V+++++ Y NVRVT
Sbjct: 325 PVRIAFVLVVHGRASRQLQRMFKAIYHKDHFYYIHVDKRSNYLHRQVLQVSRQYSNVRVT 384
Query: 291 PWRMVTIWGGASLLRMYLRSMRDLLEVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRD 350
PWRM TIWGGASLL YL+SMRDLLE+ W WDFFINLSA DYP RTN++LVAFLS+ RD
Sbjct: 385 PWRMATIWGGASLLSTYLQSMRDLLEMTDWPWDFFINLSAADYPIRTNDQLVAFLSRYRD 444
Query: 351 KNFLKSHGRDNSRFIKKQGLDRLFHECDSHMWRLGERQIPAGIVVDGGSDWFVLTRSFVE 410
NFLKSHGRDN+RFI+KQGLDRLF ECD+HMWRLG+R+IP GI VDGGSDWF+L R FVE
Sbjct: 445 MNFLKSHGRDNARFIRKQGLDRLFLECDAHMWRLGDRRIPEGIAVDGGSDWFLLNRRFVE 504
Query: 411 YVVYTDDPLVAQLRQFYTYTLLPAESFFHTVLENSLACETLVDNNLRVTNWNRKLGCKCQ 470
YV ++ D LV +++QFY+YTLLPAESFFHTVLENS C+T+VDNNLR+TNWNRKLGCKCQ
Sbjct: 505 YVTFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHCDTMVDNNLRITNWNRKLGCKCQ 564
Query: 471 YKHIVDWCGCSPNDFKPQDFLRLQQVSRPTFFARKFESTVNQEVLEILDFHLYGSYPPGT 530
YKHIVDWCGCSPNDFKPQDF R QQ +RPTFFARKFE+ VNQE++ LD++LYG+YP GT
Sbjct: 565 YKHIVDWCGCSPNDFKPQDFHRFQQTARPTFFARKFEAVVNQEIIGQLDYYLYGNYPAGT 624
Query: 531 PALKAYWENTYDAADGPSGLSDVMLTAYTAFARLSLHHAATAAPPMGTPLCRFEPRGLPS 590
P L++YWEN YD DG LSDV LT Y +FARL L A T+ G CR+ P G P+
Sbjct: 625 PGLRSYWENVYDEPDGIHSLSDVTLTLYHSFARLGLRRAETSLHTDGENSCRYYPMGHPA 684
Query: 591 SVHLYFYDDHFQGYLVTQAVQPSAQGPAETLEMWLMPQGSLKLLGRSDQASRLQSLEVGT 650
SVHLYF D FQG+L+ A ETLE W+MP+ K+ RLQ EVGT
Sbjct: 685 SVHLYFLADRFQGFLIKHHATNLAVSKLETLETWVMPKKVFKIASPPSDFGRLQFSEVGT 744
Query: 651 DWDPKERLFRNFGGLLGPLDEPVAVQRWARGPNLTATVVWIDPTYVVATSYDITVDTETE 710
DWD KERLFRNFGGLLGP+DEPV +Q+W +GPN+T TV+W+DP V+A +YDI +++ E
Sbjct: 745 DWDAKERLFRNFGGLLGPMDEPVGMQKWGKGPNVTVTVIWVDPVNVIAATYDILIESTAE 804
Query: 711 VTQYKPPLSRPLRPGPWTVRLLQFWEPLGETRFLVLPLTFNRKLPLRKDDASWLHAGPPH 770
T YKPPL+ PLRPG WTV++L W P+ ET+FLV PLTF+ + P++ ++A LH GP
Sbjct: 805 FTHYKPPLNLPLRPGVWTVKILHHWVPVAETKFLVAPLTFSNRQPIKPEEALKLHNGPLR 864
Query: 771 NEYMEQSFQGLSSILNLPQPELAEEAAQRHTQLTGPALEAWTDRELSSFWSVAGLCAIGP 830
N YMEQSFQ L+ +L+LP E A+R+ TG ALE W D + W+ +CA GP
Sbjct: 865 NAYMEQSFQSLNPVLSLPINPAQVEQARRNAASTGTALEGWLDSLVGGMWTAMDICATGP 924
Query: 831 SPCPSLEPCRLTSWSSLSPDPKSELGPVKADGRLR 865
+ CP ++ C T+WSS SPDPKSELG VK DGRLR
Sbjct: 925 TACPVMQTCSQTAWSSFSPDPKSELGAVKPDGRLR 959
Score = 52.0 bits (123), Expect = 2e-06
Identities = 44/127 (34%), Positives = 55/127 (43%), Gaps = 24/127 (18%)
Query: 1 MVASARVQKLVRRYKLAIATALAILLLQGLVVWSFSGLEEDEAGEK--------GRQRKP 52
MVA+ ++L RR A+ AL +LLLQ LVVW+FS L+ AGE+ G Q P
Sbjct: 1 MVAAPCARRLARRSHSALLAALTVLLLQTLVVWNFSSLDSG-AGERRGGAAVGGGEQPPP 59
Query: 53 RPLD-------PGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRAVTSRQRA 105
P P E + G G G R + R R PG P +Q A
Sbjct: 60 APAPRRERRDLPAEPAAARGGGGGGGGGGGGRGPQARARGGGPGEP--------RGQQPA 111
Query: 106 SRRVPPA 112
SR PA
Sbjct: 112 SRGALPA 118
>gi|4503963 glucosaminyl (N-acetyl) transferase 2, I-branching
enzyme isoform B [Homo sapiens]
Length = 400
Score = 84.7 bits (208), Expect = 3e-16
Identities = 80/305 (26%), Positives = 138/305 (45%), Gaps = 39/305 (12%)
Query: 234 IAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRSDYLHREVVE-LAQGYDNVRVTPW 292
+AY++V+H RL +A+Y Q+ + +HVD+++ ++ VE L + N +
Sbjct: 95 LAYIMVIHHH-FDTFARLFRAIYMPQNIYCVHVDEKATTEFKDAVEQLLSCFPNAFLASK 153
Query: 293 RMVTIWGGASLLRMYLRSMRDL--LEVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRD 350
++GG S L+ L +RDL EV +W + IN D+P +TN+E+V +L +
Sbjct: 154 MEPVVYGGISRLQADLNCIRDLSAFEV---SWKYVINTCGQDFPLKTNKEIVQYLKGFKG 210
Query: 351 KNFL-----KSHGRDNSRFIKKQGLDRLFHECDSHMWRLGERQIPA--GIVVDGGSDWFV 403
KN +H ++++ ++ L + S++ R + P + + GS +
Sbjct: 211 KNITPGVLPPAHAIGRTKYVHQEHLGKEL----SYVIRTTALKPPPPHNLTIYFGSAYVA 266
Query: 404 LTRSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTV-----LENSLACETLVDNNLRV 458
L+R F +V++ DP L Q+ T P E F+ T+ + S+ + NLR
Sbjct: 267 LSREFANFVLH--DPRAVDLLQWSKDTFSPDEHFWVTLNRIPGVPGSMPNASWT-GNLRA 323
Query: 459 TNW----NRKLGCKCQYKHIVDWCGCSPNDFKPQDFLRLQQVSRPTFFARKFESTVNQEV 514
W +R GC Y H + C D K V+ P+ FA KFE
Sbjct: 324 IKWSDMEDRHGGCHGHYVHGI--CIYGNGDLK-------WLVNSPSLFANKFELNTYPLT 374
Query: 515 LEILD 519
+E L+
Sbjct: 375 VECLE 379
>gi|85790495 glucosaminyl (N-acetyl) transferase 2, I-branching
enzyme isoform C [Homo sapiens]
Length = 402
Score = 84.0 bits (206), Expect = 6e-16
Identities = 78/303 (25%), Positives = 139/303 (45%), Gaps = 35/303 (11%)
Query: 234 IAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRSDYLHREVV-ELAQGYDNVRVTPW 292
+AY++V+H + +RL +A+Y Q+ + +HVD+++ ++E V +L + N +
Sbjct: 97 LAYVMVIH-KDFDTFERLFRAIYMPQNVYCVHVDEKAPAEYKESVRQLLSCFQNAFIASK 155
Query: 293 RMVTIWGGASLLRMYLRSMRDLL--EVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRD 350
++ G S L+ L ++DL+ EVP W + IN D+P +TN E+V L +
Sbjct: 156 TESVVYAGISRLQADLNCLKDLVASEVP---WKYVINTCGQDFPLKTNREIVQHLKGFKG 212
Query: 351 KNFL-----KSHGRDNSRFIKKQGLDR-LFHECDSHMWRLGERQIPAGIVVDGGSDWFVL 404
KN H ++++ ++ D+ F ++++ + P + + G+ + L
Sbjct: 213 KNITPGVLPPDHAIKRTKYVHQEHTDKGGFFVKNTNILKTSP---PHQLTIYFGTAYVAL 269
Query: 405 TRSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTVLENSLACETLVD----NNLRVTN 460
TR FV++V+ D L Q+ T P E F+ T+ S ++ + NLR
Sbjct: 270 TRDFVDFVL--RDQRAIDLLQWSKDTYSPDEHFWVTLNRVSGVPGSMPNASWTGNLRAIK 327
Query: 461 W----NRKLGCKCQYKHIVDWCGCSPNDFKPQDFLRLQQVSRPTFFARKFESTVNQEVLE 516
W +R GC Y H + C D K V+ P+ FA KFE +E
Sbjct: 328 WSDMEDRHGGCHGHYVHGI--CIYGNGDLK-------WLVNSPSLFANKFELNTYPLTVE 378
Query: 517 ILD 519
L+
Sbjct: 379 CLE 381
>gi|21717810 glucosaminyl (N-acetyl) transferase 2, I-branching
enzyme isoform A [Homo sapiens]
Length = 402
Score = 81.6 bits (200), Expect = 3e-15
Identities = 78/305 (25%), Positives = 136/305 (44%), Gaps = 39/305 (12%)
Query: 234 IAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVD-KRSDYLHREVVELAQGYDNVRVTPW 292
+AY + +H + +RL +A+Y Q+ + +H+D K +D V +L + N +
Sbjct: 97 LAYTVTIH-KDFGTFERLFRAIYMPQNVYCVHLDQKATDAFKGAVKQLLSCFPNAFLASK 155
Query: 293 RMVTIWGGASLLRMYLRSMRDLL--EVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRD 350
+ ++GG S L+ L + DL+ EVP W + IN D+P +TN E+V +L +
Sbjct: 156 KESVVYGGISRLQADLNCLEDLVASEVP---WKYVINTCGQDFPLKTNREIVQYLKGFKG 212
Query: 351 KNFL-----KSHGRDNSRFIKKQGLDRLFHECDSHMWRLGERQIPA--GIVVDGGSDWFV 403
KN H ++++ ++ L + +S++ + + + P +V+ G+ +
Sbjct: 213 KNITPGVLPPDHAVGRTKYVHQE----LLNHKNSYVIKTTKLKTPPPHDMVIYFGTAYVA 268
Query: 404 LTRSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTV-----LENSLACETLVDNNLRV 458
LTR F +V+ D L L + T P E F+ T+ + S+ + NLR
Sbjct: 269 LTRDFANFVL--QDQLALDLLSWSKDTYSPDEHFWVTLNRIPGVPGSMPNASWT-GNLRA 325
Query: 459 TNW----NRKLGCKCQYKHIVDWCGCSPNDFKPQDFLRLQQVSRPTFFARKFESTVNQEV 514
W +R GC Y H + C D K V+ P+ FA KFE
Sbjct: 326 IKWSDMEDRHGGCHGHYVHGI--CIYGNGDLK-------WLVNSPSLFANKFELNTYPLT 376
Query: 515 LEILD 519
+E L+
Sbjct: 377 VECLE 381
>gi|7706127 core 2 beta-1,6-N-acetylglucosaminyltransferase 3 [Homo
sapiens]
Length = 453
Score = 80.5 bits (197), Expect = 6e-15
Identities = 81/303 (26%), Positives = 141/303 (46%), Gaps = 29/303 (9%)
Query: 234 IAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRS-DYLHREVVELAQGYDNVRVTPW 292
IAY LVVH AI ++RL+ A+Y++ + + IH D+++ D + LA+ + N+ +
Sbjct: 133 IAYSLVVHKDAI-MVERLIHAIYNQHNIYCIHYDRKAPDTFKVAMNNLAKCFSNIFIASK 191
Query: 293 RMVTIWGGASLLRMYLRSMRDLLEVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRDKN 352
+ S L+ L + DLL+ W + INL D+P ++N ELV+ L K N
Sbjct: 192 LEAVEYAHISRLQADLNCLSDLLK-SSIQWKYVINLCGQDFPLKSNFELVSELKKLNGAN 250
Query: 353 FLKSHGRDNS---RFIKKQGLDRLFHECDSHMWR--LGERQIPAGIVVDGGSDWFVLTRS 407
L++ NS RF L R+ +E R + + P I + GS +FVL+++
Sbjct: 251 MLETVKPPNSKLERFTYHHELRRVPYEYVKLPIRTNISKEAPPHNIQIFVGSAYFVLSQA 310
Query: 408 FVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTVL-------ENSLACETLVD--NNLRV 458
FV+Y+ ++ +V + T P E F+ T++ E S + + + D + R+
Sbjct: 311 FVKYIF--NNSIVQDFFAWSKDTYSPDEHFWATLIRVPGIPGEISRSAQDVSDLQSKTRL 368
Query: 459 TNWNRKLGC---KCQYKHIVDWCGCSPNDFKPQDFLRLQQVSRPTFFARKFESTVNQEVL 515
WN G C H+ C + + + +FA KF+S V+ ++
Sbjct: 369 VKWNYYEGFFYPSCTGSHLRSVCIYGAAELR-------WLIKDGHWFANKFDSKVDPILI 421
Query: 516 EIL 518
+ L
Sbjct: 422 KCL 424
>gi|148277035 beta-1,3-galactosyl-O-glycosyl-glycoprotein
beta-1,6-N-acetylglucosaminyltransferase [Homo sapiens]
Length = 428
Score = 75.5 bits (184), Expect = 2e-13
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 234 IAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRS-DYLHREVVELAQGYDNVRVTPW 292
IAY +VVH + I L RLL+A+Y Q+F+ IHVD +S D V+ +A + NV V
Sbjct: 123 IAYSIVVHHK-IEMLDRLLRAIYMPQNFYCIHVDTKSEDSYLAAVMGIASCFSNVFVASR 181
Query: 293 RMVTIWGGASLLRMYLRSMRDLLEVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRDKN 352
++ S ++ L M+DL + W + INL D+P +TN E+V L +N
Sbjct: 182 LESVVYASWSRVQADLNCMKDLYAMSA-NWKYLINLCGMDFPIKTNLEIVRKLKLLMGEN 240
Query: 353 FLKSHGRDNSRFIKKQGLDRLFHECDSHMWRLGERQI--PAGIVVDGGSDWFVLTRSFVE 410
L++ + K++ + + + + G ++ P + GS +FV++R +V
Sbjct: 241 NLETERMPSH---KEERWKKRYEVVNGKLTNTGTVKMLPPLETPLFSGSAYFVVSREYVG 297
Query: 411 YVVYTDDPLVAQLRQFYTYTLLPAESFFHTV 441
YV+ + + +L ++ T P E + T+
Sbjct: 298 YVLQNEK--IQKLMEWAQDTYSPDEYLWATI 326
>gi|148277033 beta-1,3-galactosyl-O-glycosyl-glycoprotein
beta-1,6-N-acetylglucosaminyltransferase [Homo sapiens]
Length = 428
Score = 75.5 bits (184), Expect = 2e-13
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 234 IAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRS-DYLHREVVELAQGYDNVRVTPW 292
IAY +VVH + I L RLL+A+Y Q+F+ IHVD +S D V+ +A + NV V
Sbjct: 123 IAYSIVVHHK-IEMLDRLLRAIYMPQNFYCIHVDTKSEDSYLAAVMGIASCFSNVFVASR 181
Query: 293 RMVTIWGGASLLRMYLRSMRDLLEVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRDKN 352
++ S ++ L M+DL + W + INL D+P +TN E+V L +N
Sbjct: 182 LESVVYASWSRVQADLNCMKDLYAMSA-NWKYLINLCGMDFPIKTNLEIVRKLKLLMGEN 240
Query: 353 FLKSHGRDNSRFIKKQGLDRLFHECDSHMWRLGERQI--PAGIVVDGGSDWFVLTRSFVE 410
L++ + K++ + + + + G ++ P + GS +FV++R +V
Sbjct: 241 NLETERMPSH---KEERWKKRYEVVNGKLTNTGTVKMLPPLETPLFSGSAYFVVSREYVG 297
Query: 411 YVVYTDDPLVAQLRQFYTYTLLPAESFFHTV 441
YV+ + + +L ++ T P E + T+
Sbjct: 298 YVLQNEK--IQKLMEWAQDTYSPDEYLWATI 326
>gi|148277031 beta-1,3-galactosyl-O-glycosyl-glycoprotein
beta-1,6-N-acetylglucosaminyltransferase [Homo sapiens]
Length = 428
Score = 75.5 bits (184), Expect = 2e-13
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 234 IAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRS-DYLHREVVELAQGYDNVRVTPW 292
IAY +VVH + I L RLL+A+Y Q+F+ IHVD +S D V+ +A + NV V
Sbjct: 123 IAYSIVVHHK-IEMLDRLLRAIYMPQNFYCIHVDTKSEDSYLAAVMGIASCFSNVFVASR 181
Query: 293 RMVTIWGGASLLRMYLRSMRDLLEVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRDKN 352
++ S ++ L M+DL + W + INL D+P +TN E+V L +N
Sbjct: 182 LESVVYASWSRVQADLNCMKDLYAMSA-NWKYLINLCGMDFPIKTNLEIVRKLKLLMGEN 240
Query: 353 FLKSHGRDNSRFIKKQGLDRLFHECDSHMWRLGERQI--PAGIVVDGGSDWFVLTRSFVE 410
L++ + K++ + + + + G ++ P + GS +FV++R +V
Sbjct: 241 NLETERMPSH---KEERWKKRYEVVNGKLTNTGTVKMLPPLETPLFSGSAYFVVSREYVG 297
Query: 411 YVVYTDDPLVAQLRQFYTYTLLPAESFFHTV 441
YV+ + + +L ++ T P E + T+
Sbjct: 298 YVLQNEK--IQKLMEWAQDTYSPDEYLWATI 326
>gi|148277029 beta-1,3-galactosyl-O-glycosyl-glycoprotein
beta-1,6-N-acetylglucosaminyltransferase [Homo sapiens]
Length = 428
Score = 75.5 bits (184), Expect = 2e-13
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 234 IAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRS-DYLHREVVELAQGYDNVRVTPW 292
IAY +VVH + I L RLL+A+Y Q+F+ IHVD +S D V+ +A + NV V
Sbjct: 123 IAYSIVVHHK-IEMLDRLLRAIYMPQNFYCIHVDTKSEDSYLAAVMGIASCFSNVFVASR 181
Query: 293 RMVTIWGGASLLRMYLRSMRDLLEVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRDKN 352
++ S ++ L M+DL + W + INL D+P +TN E+V L +N
Sbjct: 182 LESVVYASWSRVQADLNCMKDLYAMSA-NWKYLINLCGMDFPIKTNLEIVRKLKLLMGEN 240
Query: 353 FLKSHGRDNSRFIKKQGLDRLFHECDSHMWRLGERQI--PAGIVVDGGSDWFVLTRSFVE 410
L++ + K++ + + + + G ++ P + GS +FV++R +V
Sbjct: 241 NLETERMPSH---KEERWKKRYEVVNGKLTNTGTVKMLPPLETPLFSGSAYFVVSREYVG 297
Query: 411 YVVYTDDPLVAQLRQFYTYTLLPAESFFHTV 441
YV+ + + +L ++ T P E + T+
Sbjct: 298 YVLQNEK--IQKLMEWAQDTYSPDEYLWATI 326
>gi|21614523 beta-1,3-galactosyl-O-glycosyl-glycoprotein
beta-1,6-N-acetylglucosaminyltransferase [Homo sapiens]
Length = 428
Score = 75.5 bits (184), Expect = 2e-13
Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 234 IAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRS-DYLHREVVELAQGYDNVRVTPW 292
IAY +VVH + I L RLL+A+Y Q+F+ IHVD +S D V+ +A + NV V
Sbjct: 123 IAYSIVVHHK-IEMLDRLLRAIYMPQNFYCIHVDTKSEDSYLAAVMGIASCFSNVFVASR 181
Query: 293 RMVTIWGGASLLRMYLRSMRDLLEVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRDKN 352
++ S ++ L M+DL + W + INL D+P +TN E+V L +N
Sbjct: 182 LESVVYASWSRVQADLNCMKDLYAMSA-NWKYLINLCGMDFPIKTNLEIVRKLKLLMGEN 240
Query: 353 FLKSHGRDNSRFIKKQGLDRLFHECDSHMWRLGERQI--PAGIVVDGGSDWFVLTRSFVE 410
L++ + K++ + + + + G ++ P + GS +FV++R +V
Sbjct: 241 NLETERMPSH---KEERWKKRYEVVNGKLTNTGTVKMLPPLETPLFSGSAYFVVSREYVG 297
Query: 411 YVVYTDDPLVAQLRQFYTYTLLPAESFFHTV 441
YV+ + + +L ++ T P E + T+
Sbjct: 298 YVLQNEK--IQKLMEWAQDTYSPDEYLWATI 326
>gi|4758422 glucosaminyl (N-acetyl) transferase 3, mucin type [Homo
sapiens]
Length = 438
Score = 75.1 bits (183), Expect = 3e-13
Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 20/216 (9%)
Query: 234 IAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRSDYLHREVVE-LAQGYDNVRVTPW 292
IAY +V+H + I +RLL+AVY Q+ + +HVD++S +E V+ + + NV +
Sbjct: 133 IAYSMVIHEK-IENFERLLRAVYAPQNIYCVHVDEKSPETFKEAVKAIISCFPNVFIASK 191
Query: 293 RMVTIWGGASLLRMYLRSMRDLLE--VPGWAWDFFINLSATDYPTRTNEELVAFLSKNRD 350
+ ++ S ++ L M DLL+ VP W +F+N TD+P ++N E+V L
Sbjct: 192 LVRVVYASWSRVQADLNCMEDLLQSSVP---WKYFLNTCGTDFPIKSNAEMVQALKMLNG 248
Query: 351 KNFLKS-----HGRDNSRFIKKQGLDRLFHECDSHMWRLGERQIPAGIVVDGGSDWFVLT 405
+N ++S H ++ + D L H+ + P + + G+ + V +
Sbjct: 249 RNSMESEVPPKHKETRWKYHFEVVRDTL------HLTNKKKDPPPYNLTMFTGNAYIVAS 302
Query: 406 RSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTV 441
R FV++V+ +P QL ++ T P E + T+
Sbjct: 303 RDFVQHVL--KNPKSQQLIEWVKDTYSPDEHLWATL 336
>gi|190684701 glucosaminyl (N-acetyl) transferase family member 7
[Homo sapiens]
Length = 430
Score = 71.2 bits (173), Expect = 4e-12
Identities = 69/305 (22%), Positives = 145/305 (47%), Gaps = 37/305 (12%)
Query: 234 IAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRSDYLHREVVE-LAQGYDNVRVTPW 292
+AY++ +H + + +LL+A+Y Q+ + IHVD+++ ++ V+ L ++NV ++
Sbjct: 111 LAYIITIH-KELAMFVQLLRAIYVPQNVYCIHVDEKAPMKYKTAVQTLVNCFENVFISSK 169
Query: 293 RMVTIWGGASLLRMYLRSMRDLLEVPGWAWDFFINLSATDYPTRTNEELVAFL-SKNRDK 351
+ G + L+ + M+ L+ + W++ INL D+P +TN E++ ++ SK DK
Sbjct: 170 TEKVAYAGFTRLQADINCMKVLVHSK-FQWNYVINLCGQDFPIKTNREIIHYIRSKWSDK 228
Query: 352 NF---------LKSH-GRDNSRFIKKQGLDRLFHECDSHMWRLGERQIPAGIVVDGGSDW 401
N +KS + + F+ K + + ++ ++ + P + + GS +
Sbjct: 229 NITPGVIQPLHIKSKTSQSHLEFVPKGSI----YAPPNNRFK---DKPPHNLTIYFGSAY 281
Query: 402 FVLTRSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTV--LENSLACETLV--DNNLR 457
+VLTR FVE+++ D + Q+ P + ++ T+ L+++ + N+R
Sbjct: 282 YVLTRKFVEFIL--TDIHAKDMLQWSKDIRSPEQHYWVTLNRLKDAPGATPNAGWEGNVR 339
Query: 458 VTNWNRKLG---CKCQYKHIVDWCGCSPNDFKPQDFLRLQQVSRPTFFARKFESTVNQEV 514
+ G C+ +++ D C P D + P+ FA KFE + + V
Sbjct: 340 AIKRKSEEGNVHDGCKGRYVEDICVYGPGDLP-------WLIQSPSLFANKFEPSTDPLV 392
Query: 515 LEILD 519
+ L+
Sbjct: 393 VTCLE 397
>gi|239754233 PREDICTED: glucosaminyl (N-acetyl) transferase 6 [Homo
sapiens]
Length = 391
Score = 56.6 bits (135), Expect = 1e-07
Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 28/251 (11%)
Query: 234 IAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRSDYLHREVV-ELAQGYDNVRVTPW 292
+AY++ + + + L A+Y Q+ + IHVDK + + V EL + + N ++
Sbjct: 99 LAYVMTI-SQDFDTFEWLFWAIYMPQNVYCIHVDKAATIDFKIAVSELLECFSNAFISSQ 157
Query: 293 RMVTIWGGASLLRMYLRSMRDLLEVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRDKN 352
I+GG S L+ L MRDL+ W + N D+P +TN E+V +L N
Sbjct: 158 SEYIIYGGKSRLQADLACMRDLI-ASTVQWRYVTNTGDHDFPLKTNREIVQYLKTMNWTN 216
Query: 353 FLKS-----HGRDNSRFIKKQGLDRLFHECDSHMWRLGERQ----IPAGIVVDGGSDWFV 403
+ + ++ ++ + +H + L + + P + + GS +
Sbjct: 217 ITPNLVSVLKSTERIKYTHRE------YRTRAHAFVLKKHKKKSPPPRQLKIHFGSSYVA 270
Query: 404 LTRSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTVLENSLACETLVDNNLRVTNWNR 463
LTR FV + +Y + + +L Q T P + F+ T+ N++ E L V + +
Sbjct: 271 LTREFVHFALY--NKIAIELLQRSQDTYSPDKHFWITL--NNIPVEGTGPWILAVNSGS- 325
Query: 464 KLGCKCQYKHI 474
CQ +HI
Sbjct: 326 -----CQNRHI 331
>gi|239748765 PREDICTED: glucosaminyl (N-acetyl) transferase 6 [Homo
sapiens]
Length = 391
Score = 56.6 bits (135), Expect = 1e-07
Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 28/251 (11%)
Query: 234 IAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRSDYLHREVV-ELAQGYDNVRVTPW 292
+AY++ + + + L A+Y Q+ + IHVDK + + V EL + + N ++
Sbjct: 99 LAYVMTI-SQDFDTFEWLFWAIYMPQNVYCIHVDKAATIDFKIAVSELLECFSNAFISSQ 157
Query: 293 RMVTIWGGASLLRMYLRSMRDLLEVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRDKN 352
I+GG S L+ L MRDL+ W + N D+P +TN E+V +L N
Sbjct: 158 SEYIIYGGKSRLQADLACMRDLI-ASTVQWRYVTNTGDHDFPLKTNREIVQYLKTMNWTN 216
Query: 353 FLKS-----HGRDNSRFIKKQGLDRLFHECDSHMWRLGERQ----IPAGIVVDGGSDWFV 403
+ + ++ ++ + +H + L + + P + + GS +
Sbjct: 217 ITPNLVSVLKSTERIKYTHRE------YRTRAHAFVLKKHKKKSPPPRQLKIHFGSSYVA 270
Query: 404 LTRSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTVLENSLACETLVDNNLRVTNWNR 463
LTR FV + +Y + + +L Q T P + F+ T+ N++ E L V + +
Sbjct: 271 LTREFVHFALY--NKIAIELLQRSQDTYSPDKHFWITL--NNIPVEGTGPWILAVNSGS- 325
Query: 464 KLGCKCQYKHI 474
CQ +HI
Sbjct: 326 -----CQNRHI 331
>gi|239742810 PREDICTED: glucosaminyl (N-acetyl) transferase 6 [Homo
sapiens]
Length = 391
Score = 56.6 bits (135), Expect = 1e-07
Identities = 60/251 (23%), Positives = 110/251 (43%), Gaps = 28/251 (11%)
Query: 234 IAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRSDYLHREVV-ELAQGYDNVRVTPW 292
+AY++ + + + L A+Y Q+ + IHVDK + + V EL + + N ++
Sbjct: 99 LAYVMTI-SQDFDTFEWLFWAIYMPQNVYCIHVDKAATIDFKIAVSELLECFSNAFISSQ 157
Query: 293 RMVTIWGGASLLRMYLRSMRDLLEVPGWAWDFFINLSATDYPTRTNEELVAFLSKNRDKN 352
I+GG S L+ L MRDL+ W + N D+P +TN E+V +L N
Sbjct: 158 SEYIIYGGKSRLQADLACMRDLI-ASTVQWRYVTNTGDHDFPLKTNREIVQYLKTMNWTN 216
Query: 353 FLKS-----HGRDNSRFIKKQGLDRLFHECDSHMWRLGERQ----IPAGIVVDGGSDWFV 403
+ + ++ ++ + +H + L + + P + + GS +
Sbjct: 217 ITPNLVSVLKSTERIKYTHRE------YRTRAHAFVLKKHKKKSPPPRQLKIHFGSSYVA 270
Query: 404 LTRSFVEYVVYTDDPLVAQLRQFYTYTLLPAESFFHTVLENSLACETLVDNNLRVTNWNR 463
LTR FV + +Y + + +L Q T P + F+ T+ N++ E L V + +
Sbjct: 271 LTREFVHFALY--NKIAIELLQRSQDTYSPDKHFWITL--NNIPVEGTGPWILAVNSGS- 325
Query: 464 KLGCKCQYKHI 474
CQ +HI
Sbjct: 326 -----CQNRHI 331
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 45.1 bits (105), Expect = 3e-04
Identities = 38/115 (33%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 39 EEDEAGEKGRQRKPRPLDPGE-GSKDTDSSAGRRGSTGRRHGRWR-GRAESPGVPVAKVV 96
E+ G+ G Q P P PGE G + D G RG G R G PG+P V
Sbjct: 483 EKGHRGDTGAQGLPGP--PGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGV 540
Query: 97 RAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAP 151
R + Q + P P PG+Q G GA G PHG+ G +G P
Sbjct: 541 RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIG--PHGEKGP-QGKP 592
Score = 34.7 bits (78), Expect = 0.39
Identities = 38/109 (34%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 43 AGEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGV-----PVAKVVR 97
AG++G + P P PG KD AG RG G R G A PG+ P
Sbjct: 874 AGKEGTKGDPGP--PGAPGKD--GPAGLRGFPGERG--LPGTAGGPGLKGNEGPSGPPGP 927
Query: 98 AVTSRQR-ASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTG 145
A + +R A+ P PP PG Q GAA + + G G P G TG
Sbjct: 928 AGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG--PIGPTG 974
Score = 32.0 bits (71), Expect = 2.5
Identities = 30/112 (26%), Positives = 36/112 (32%), Gaps = 6/112 (5%)
Query: 42 EAGEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRAVTS 101
+ GE G Q K P P G +AG G G R G PG P + +
Sbjct: 822 QRGEVGFQGKTGPPGP-PGVVGPQGAAGETGPMGER-----GHPGPPGPPGEQGLPGTAG 875
Query: 102 RQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAPQP 153
++ P P G L G L G AG P G P P
Sbjct: 876 KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGP 927
Score = 31.6 bits (70), Expect = 3.3
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 19/104 (18%)
Query: 44 GEKGRQRKPRPLDP-GEGSKD-TDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRAVTS 101
G +G P P P G KD G+RG G ++G+ PG P V
Sbjct: 794 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVG-----FQGKTGPPGPP------GVVG 842
Query: 102 RQRASRRVPPAP------PPEAPGRQNLSGAAAGEALVGAAGFP 139
Q A+ P PP PG Q L G A E G G P
Sbjct: 843 PQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPP 886
Score = 31.2 bits (69), Expect = 4.3
Identities = 33/133 (24%), Positives = 43/133 (32%), Gaps = 18/133 (13%)
Query: 39 EEDEAGEKGRQRKPRPLDPG--------------EGSKDTDSSAGRRGSTGRRHGRWRGR 84
E+ E+G+ G P P P G G RG G + R G
Sbjct: 1152 EKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDR--GE 1209
Query: 85 AESPGVPVAKVVRAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDT 144
PG P + + PA P + GRQ GA +GA G G
Sbjct: 1210 DGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG--KTGPV 1267
Query: 145 GSVEGAPQPTDNG 157
G A +P +G
Sbjct: 1268 GPAGPAGKPGPDG 1280
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 45.1 bits (105), Expect = 3e-04
Identities = 38/115 (33%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 39 EEDEAGEKGRQRKPRPLDPGE-GSKDTDSSAGRRGSTGRRHGRWR-GRAESPGVPVAKVV 96
E+ G+ G Q P P PGE G + D G RG G R G PG+P V
Sbjct: 462 EKGHRGDTGAQGLPGP--PGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGV 519
Query: 97 RAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAP 151
R + Q + P P PG+Q G GA G PHG+ G +G P
Sbjct: 520 RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIG--PHGEKGP-QGKP 571
Score = 34.7 bits (78), Expect = 0.39
Identities = 38/109 (34%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 43 AGEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGV-----PVAKVVR 97
AG++G + P P PG KD AG RG G R G A PG+ P
Sbjct: 853 AGKEGTKGDPGP--PGAPGKD--GPAGLRGFPGERG--LPGTAGGPGLKGNEGPSGPPGP 906
Query: 98 AVTSRQR-ASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTG 145
A + +R A+ P PP PG Q GAA + + G G P G TG
Sbjct: 907 AGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG--PIGPTG 953
Score = 32.0 bits (71), Expect = 2.5
Identities = 30/112 (26%), Positives = 36/112 (32%), Gaps = 6/112 (5%)
Query: 42 EAGEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRAVTS 101
+ GE G Q K P P G +AG G G R G PG P + +
Sbjct: 801 QRGEVGFQGKTGPPGP-PGVVGPQGAAGETGPMGER-----GHPGPPGPPGEQGLPGTAG 854
Query: 102 RQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAPQP 153
++ P P G L G L G AG P G P P
Sbjct: 855 KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGP 906
Score = 31.6 bits (70), Expect = 3.3
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 19/104 (18%)
Query: 44 GEKGRQRKPRPLDP-GEGSKD-TDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRAVTS 101
G +G P P P G KD G+RG G ++G+ PG P V
Sbjct: 773 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVG-----FQGKTGPPGPP------GVVG 821
Query: 102 RQRASRRVPPAP------PPEAPGRQNLSGAAAGEALVGAAGFP 139
Q A+ P PP PG Q L G A E G G P
Sbjct: 822 PQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPP 865
Score = 31.2 bits (69), Expect = 4.3
Identities = 33/133 (24%), Positives = 43/133 (32%), Gaps = 18/133 (13%)
Query: 39 EEDEAGEKGRQRKPRPLDPG--------------EGSKDTDSSAGRRGSTGRRHGRWRGR 84
E+ E+G+ G P P P G G RG G + R G
Sbjct: 1131 EKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDR--GE 1188
Query: 85 AESPGVPVAKVVRAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDT 144
PG P + + PA P + GRQ GA +GA G G
Sbjct: 1189 DGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG--KTGPV 1246
Query: 145 GSVEGAPQPTDNG 157
G A +P +G
Sbjct: 1247 GPAGPAGKPGPDG 1259
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 45.1 bits (105), Expect = 3e-04
Identities = 38/115 (33%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 39 EEDEAGEKGRQRKPRPLDPGE-GSKDTDSSAGRRGSTGRRHGRWR-GRAESPGVPVAKVV 96
E+ G+ G Q P P PGE G + D G RG G R G PG+P V
Sbjct: 569 EKGHRGDTGAQGLPGP--PGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGV 626
Query: 97 RAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAP 151
R + Q + P P PG+Q G GA G PHG+ G +G P
Sbjct: 627 RGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIG--PHGEKGP-QGKP 678
Score = 34.7 bits (78), Expect = 0.39
Identities = 38/109 (34%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 43 AGEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGV-----PVAKVVR 97
AG++G + P P PG KD AG RG G R G A PG+ P
Sbjct: 960 AGKEGTKGDPGP--PGAPGKD--GPAGLRGFPGERG--LPGTAGGPGLKGNEGPSGPPGP 1013
Query: 98 AVTSRQR-ASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTG 145
A + +R A+ P PP PG Q GAA + + G G P G TG
Sbjct: 1014 AGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKG--PIGPTG 1060
Score = 32.0 bits (71), Expect = 2.5
Identities = 30/112 (26%), Positives = 36/112 (32%), Gaps = 6/112 (5%)
Query: 42 EAGEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRAVTS 101
+ GE G Q K P P G +AG G G R G PG P + +
Sbjct: 908 QRGEVGFQGKTGPPGP-PGVVGPQGAAGETGPMGER-----GHPGPPGPPGEQGLPGTAG 961
Query: 102 RQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAPQP 153
++ P P G L G L G AG P G P P
Sbjct: 962 KEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGP 1013
Score = 31.6 bits (70), Expect = 3.3
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 19/104 (18%)
Query: 44 GEKGRQRKPRPLDP-GEGSKD-TDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRAVTS 101
G +G P P P G KD G+RG G ++G+ PG P V
Sbjct: 880 GPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVG-----FQGKTGPPGPP------GVVG 928
Query: 102 RQRASRRVPPAP------PPEAPGRQNLSGAAAGEALVGAAGFP 139
Q A+ P PP PG Q L G A E G G P
Sbjct: 929 PQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPP 972
Score = 31.2 bits (69), Expect = 4.3
Identities = 33/133 (24%), Positives = 43/133 (32%), Gaps = 18/133 (13%)
Query: 39 EEDEAGEKGRQRKPRPLDPG--------------EGSKDTDSSAGRRGSTGRRHGRWRGR 84
E+ E+G+ G P P P G G RG G + R G
Sbjct: 1238 EKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDR--GE 1295
Query: 85 AESPGVPVAKVVRAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDT 144
PG P + + PA P + GRQ GA +GA G G
Sbjct: 1296 DGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPG--KTGPV 1353
Query: 145 GSVEGAPQPTDNG 157
G A +P +G
Sbjct: 1354 GPAGPAGKPGPDG 1366
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 39.3 bits (90), Expect = 0.016
Identities = 44/158 (27%), Positives = 57/158 (36%), Gaps = 44/158 (27%)
Query: 39 EEDEAGEKGRQRKPRPLDP--------GEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGV 90
E+ E G G + P+ P G+GSK + G RGS G+ +G + PG
Sbjct: 471 EKGEPGPPGPAGERGPIGPAGPPGERGGKGSKGSQGPKGSRGSPGKPGP--QGPSGDPGP 528
Query: 91 PVAKVVRAVTSRQRASRRVPPAPP-----------PEAPGRQNLSGAAAGEALVGAAGFP 139
P + P PP P PG + L G + G G P
Sbjct: 529 PGPPGKEGLPG--------PQGPPGFQGLQGTVGEPGVPGPRGLPGLPGVPGMPGPKGPP 580
Query: 140 -PHGDTGSV-------EGAPQPTDNG-------FTPKC 162
P G +G+V E P P DNG FT KC
Sbjct: 581 GPPGPSGAVVPLALQNEPTPAPEDNGCPPHWKNFTDKC 618
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 38.9 bits (89), Expect = 0.021
Identities = 42/120 (35%), Positives = 52/120 (43%), Gaps = 18/120 (15%)
Query: 44 GEKGRQRKPRPLD-PGE-GSKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVV---RA 98
G KG + + P PGE G AG +GS G G A +PG P + + R
Sbjct: 905 GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGAD-----GPAGAPGTPGPQGIAGQRG 959
Query: 99 VTSR--QRASRRVPPAPPPEA-PGRQNLSGAAAGEALVGAAGFP----PHGDTGSVEGAP 151
V QR R P P P PG+Q SGA+ G G P P G++G EGAP
Sbjct: 960 VVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGR-EGAP 1018
Score = 36.2 bits (82), Expect = 0.13
Identities = 39/121 (32%), Positives = 46/121 (38%), Gaps = 17/121 (14%)
Query: 35 FSGLE--EDEAGEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGVPV 92
FSGL+ + +AG G K P PGE G RG G R GR +PG
Sbjct: 270 FSGLDGAKGDAGPAGP--KGEPGSPGENG--APGQMGPRGLPGER-----GRPGAPGPAG 320
Query: 93 AKVVRAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAPQ 152
A+ T PA PP PG G A + G+ G P G V G P
Sbjct: 321 ARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEG--PQG----VRGEPG 374
Query: 153 P 153
P
Sbjct: 375 P 375
Score = 35.8 bits (81), Expect = 0.18
Identities = 42/142 (29%), Positives = 49/142 (34%), Gaps = 16/142 (11%)
Query: 39 EEDEAGEKGRQRKPRPLDP-GEGSKDTDSSA----GRRGSTGRRHGR-WRGRAESPGVPV 92
E+ AG G Q P P P GE K + G G +G R R + G G P
Sbjct: 633 EQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPG 692
Query: 93 AKVVRAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFP-PHGDTGSVEGAP 151
R A P APG Q G GAAG P P GD G + P
Sbjct: 693 PAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRG--DAGP 750
Query: 152 QPTDNGFTPKCEIVGKDALSAL 173
+ D GKD + L
Sbjct: 751 KGADGS-------PGKDGVRGL 765
Score = 33.5 bits (75), Expect = 0.87
Identities = 38/131 (29%), Positives = 44/131 (33%), Gaps = 18/131 (13%)
Query: 42 EAGEKGRQRKPRPLDPG--EGSKDTDSSAGRRGSTGRRHGRW----RGRAESPGVPVAKV 95
E GE G P P G D AG+ G G R RG + G+P K
Sbjct: 207 EPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKG 266
Query: 96 VRAVTSRQRASRRVPPAPP---PEAPGRQNLSGAAAGEALVGAAGFP----PHGDTGS-- 146
R + A PA P P +PG G L G G P P G G+
Sbjct: 267 HRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDG 326
Query: 147 ---VEGAPQPT 154
G P PT
Sbjct: 327 ATGAAGPPGPT 337
Score = 33.5 bits (75), Expect = 0.87
Identities = 38/140 (27%), Positives = 49/140 (35%), Gaps = 30/140 (21%)
Query: 42 EAGEKGRQRKPRPLD----PGE-------GSKDTDSSAGRRGSTGRRHGRW--------- 81
E G++G + +P P PGE G D AG +G G R
Sbjct: 465 EEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPG 524
Query: 82 -RGRAESPGVPVAK-VVRAVTSRQRASRRVPPAP--------PPEAPGRQNLSGAAAGEA 131
GR G+P AK + + S + PP P PP PG + +G
Sbjct: 525 EAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPG 584
Query: 132 LVGAAGFPPHGDTGSVEGAP 151
GAAG P V G P
Sbjct: 585 PKGAAGEPGKAGERGVPGPP 604
Score = 33.1 bits (74), Expect = 1.1
Identities = 45/148 (30%), Positives = 51/148 (34%), Gaps = 31/148 (20%)
Query: 39 EEDEAGEKGRQRKPRPLDPG-----------EGSKDTDSSAGRRGSTGRRHGRWR----- 82
E +AG KG P P P G+K SAG G+TG R
Sbjct: 828 EPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPG 887
Query: 83 --GRAESPGVPV------AKVVRAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVG 134
G A PG P K R T V P PP G + GA + G
Sbjct: 888 PSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGA---DGPAG 944
Query: 135 AAGFP-PHGDTG--SVEGAP-QPTDNGF 158
A G P P G G V G P Q + GF
Sbjct: 945 APGTPGPQGIAGQRGVVGLPGQRGERGF 972
Score = 32.0 bits (71), Expect = 2.5
Identities = 33/113 (29%), Positives = 42/113 (37%), Gaps = 11/113 (9%)
Query: 43 AGEKGRQRKPRPLDPG-EGSKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAK-VVRAVT 100
AG+ GR P P PG G G +G+ G G+A GVP V
Sbjct: 559 AGQDGRPGPPGP--PGARGQAGVMGFPGPKGAAGEP-----GKAGERGVPGPPGAVGPAG 611
Query: 101 SRQRASRRVPPAP--PPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAP 151
A + PP P P G Q +G+ + L G AG P +G P
Sbjct: 612 KDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVP 664
Score = 32.0 bits (71), Expect = 2.5
Identities = 39/136 (28%), Positives = 48/136 (35%), Gaps = 29/136 (21%)
Query: 44 GEKGRQRKPRPLDPG--EGSKDTDSSAGRRGSTGRRHGRWRGRAESP----GVPVAKVVR 97
G G P P+ P G + AG G G R + P G + R
Sbjct: 1046 GAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDR 1105
Query: 98 AVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAPQPTDNG 157
+ + S P PP +PG Q SGA+ G AG P G GS GAP
Sbjct: 1106 GIKGHRGFSGLQGPPGPPGSPGEQGPSGAS------GPAG--PRGPPGSA-GAP------ 1150
Query: 158 FTPKCEIVGKDALSAL 173
GKD L+ L
Sbjct: 1151 --------GKDGLNGL 1158
Score = 31.2 bits (69), Expect = 4.3
Identities = 33/110 (30%), Positives = 40/110 (36%), Gaps = 16/110 (14%)
Query: 39 EEDEAGEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRA 98
++ +G G + P P+ P G +GR G+ G GR SPG AK R
Sbjct: 984 KQGPSGASGERGPPGPMGP-PGLAGPPGESGREGAPGAEGSP--GRDGSPG---AKGDRG 1037
Query: 99 VTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAG-FPPHGDTGSV 147
T PA PP APG G G G P G G V
Sbjct: 1038 ETG---------PAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPV 1078
Score = 30.4 bits (67), Expect = 7.4
Identities = 30/107 (28%), Positives = 36/107 (33%), Gaps = 3/107 (2%)
Query: 43 AGEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRAVTSR 102
AGEKG P G+ AG+RG G R G PG+P
Sbjct: 931 AGEKGSPGADGPAG-APGTPGPQGIAGQRGVVGLPGQR--GERGFPGLPGPSGEPGKQGP 987
Query: 103 QRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEG 149
AS P P PG G + E GA G P + +G
Sbjct: 988 SGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKG 1034
Score = 30.0 bits (66), Expect = 9.6
Identities = 35/131 (26%), Positives = 46/131 (35%), Gaps = 24/131 (18%)
Query: 44 GEKGRQRKPRPLDP--GEGSKDTDSSAGRRGSTGRRHGRWR-------GRAESPGVPVAK 94
GE+G Q P P P G+ D + G G+ G + G + G+P K
Sbjct: 683 GERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPK 742
Query: 95 VVRAVTSRQRASRR------------VPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHG 142
R + A + P P APG + SG + GA G P G
Sbjct: 743 GDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAP--G 800
Query: 143 DTGSVEGAPQP 153
D G G P P
Sbjct: 801 DRGE-PGPPGP 810
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 38.9 bits (89), Expect = 0.021
Identities = 39/122 (31%), Positives = 46/122 (37%), Gaps = 18/122 (14%)
Query: 44 GEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWR-GRAESPGVP-VAKVVRAVTS 101
GEKG DPG D G RGS G G SPG+P A +
Sbjct: 843 GEKG--------DPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGT 894
Query: 102 RQRASRRVPPAPPPE--APGRQNLSGAAAGEALVGAAGFP-PHGDTGS-----VEGAPQP 153
+ PP PP PGR + G + L G G P P G+ GS + G P P
Sbjct: 895 KGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGP 954
Query: 154 TD 155
D
Sbjct: 955 MD 956
Score = 37.7 bits (86), Expect = 0.046
Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 17/121 (14%)
Query: 39 EEDEAGEKGRQRKPRPLDPGE-GSKDTDSSAGRRGSTGRRHGR-WRGRAESPGVPVAKVV 96
E+ GE G P P+DP GSK G G G + ++G PG P
Sbjct: 939 EKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQ 998
Query: 97 RAVTSRQRASRRVPPAPP--PEAPGRQNLSGAAAGEALVGAAGFP-PHGDTGSVEGAPQP 153
+ PP P P PG+ L G + +G GFP P G VEG P P
Sbjct: 999 PGLPG--------PPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQG----VEGPPGP 1046
Query: 154 T 154
+
Sbjct: 1047 S 1047
Score = 36.6 bits (83), Expect = 0.10
Identities = 21/72 (29%), Positives = 28/72 (38%)
Query: 82 RGRAESPGVPVAKVVRAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPH 141
+G A PG+P ++ + Q P PP PGR L G G G P
Sbjct: 1378 KGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQ 1437
Query: 142 GDTGSVEGAPQP 153
T ++G P P
Sbjct: 1438 PGTRGLDGPPGP 1449
Score = 30.8 bits (68), Expect = 5.7
Identities = 30/115 (26%), Positives = 40/115 (34%), Gaps = 5/115 (4%)
Query: 44 GEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRR----HGRWRGRAESPGVPVAKVVRAV 99
G+KG P P P +G + G G+ G H G PG K R
Sbjct: 75 GQKGDDGIPGPPGP-KGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGF 133
Query: 100 TSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAPQPT 154
P PP PG + G+ +L G G P + ++G P PT
Sbjct: 134 PGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPT 188
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 38.9 bits (89), Expect = 0.021
Identities = 39/122 (31%), Positives = 46/122 (37%), Gaps = 18/122 (14%)
Query: 44 GEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWR-GRAESPGVP-VAKVVRAVTS 101
GEKG DPG D G RGS G G SPG+P A +
Sbjct: 843 GEKG--------DPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGT 894
Query: 102 RQRASRRVPPAPPPE--APGRQNLSGAAAGEALVGAAGFP-PHGDTGS-----VEGAPQP 153
+ PP PP PGR + G + L G G P P G+ GS + G P P
Sbjct: 895 KGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGP 954
Query: 154 TD 155
D
Sbjct: 955 MD 956
Score = 37.7 bits (86), Expect = 0.046
Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 17/121 (14%)
Query: 39 EEDEAGEKGRQRKPRPLDPGE-GSKDTDSSAGRRGSTGRRHGR-WRGRAESPGVPVAKVV 96
E+ GE G P P+DP GSK G G G + ++G PG P
Sbjct: 939 EKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQ 998
Query: 97 RAVTSRQRASRRVPPAPP--PEAPGRQNLSGAAAGEALVGAAGFP-PHGDTGSVEGAPQP 153
+ PP P P PG+ L G + +G GFP P G VEG P P
Sbjct: 999 PGLPG--------PPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQG----VEGPPGP 1046
Query: 154 T 154
+
Sbjct: 1047 S 1047
Score = 36.6 bits (83), Expect = 0.10
Identities = 21/72 (29%), Positives = 28/72 (38%)
Query: 82 RGRAESPGVPVAKVVRAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPH 141
+G A PG+P ++ + Q P PP PGR L G G G P
Sbjct: 1372 KGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQ 1431
Query: 142 GDTGSVEGAPQP 153
T ++G P P
Sbjct: 1432 PGTRGLDGPPGP 1443
Score = 31.2 bits (69), Expect = 4.3
Identities = 38/120 (31%), Positives = 44/120 (36%), Gaps = 25/120 (20%)
Query: 40 EDEAGEKGRQRKP-RPLDPG-EGSKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVR 97
E G G Q P RP PG EG + G +G G G+ PG+P K
Sbjct: 1248 EGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGIKGEKGNP-----GQPGLPGLPGLK--- 1299
Query: 98 AVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFP----PHGDTGSV--EGAP 151
+ PP PGR L+G L G GFP P G GS EG P
Sbjct: 1300 --------GDQGPPGLQGN-PGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEP 1350
Score = 30.8 bits (68), Expect = 5.7
Identities = 30/115 (26%), Positives = 40/115 (34%), Gaps = 5/115 (4%)
Query: 44 GEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRR----HGRWRGRAESPGVPVAKVVRAV 99
G+KG P P P +G + G G+ G H G PG K R
Sbjct: 75 GQKGDDGIPGPPGP-KGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGF 133
Query: 100 TSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAPQPT 154
P PP PG + G+ +L G G P + ++G P PT
Sbjct: 134 PGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPT 188
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 38.9 bits (89), Expect = 0.021
Identities = 39/122 (31%), Positives = 46/122 (37%), Gaps = 18/122 (14%)
Query: 44 GEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWR-GRAESPGVP-VAKVVRAVTS 101
GEKG DPG D G RGS G G SPG+P A +
Sbjct: 843 GEKG--------DPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGT 894
Query: 102 RQRASRRVPPAPPPE--APGRQNLSGAAAGEALVGAAGFP-PHGDTGS-----VEGAPQP 153
+ PP PP PGR + G + L G G P P G+ GS + G P P
Sbjct: 895 KGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGP 954
Query: 154 TD 155
D
Sbjct: 955 MD 956
Score = 37.7 bits (86), Expect = 0.046
Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 17/121 (14%)
Query: 39 EEDEAGEKGRQRKPRPLDPGE-GSKDTDSSAGRRGSTGRRHGR-WRGRAESPGVPVAKVV 96
E+ GE G P P+DP GSK G G G + ++G PG P
Sbjct: 939 EKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQ 998
Query: 97 RAVTSRQRASRRVPPAPP--PEAPGRQNLSGAAAGEALVGAAGFP-PHGDTGSVEGAPQP 153
+ PP P P PG+ L G + +G GFP P G VEG P P
Sbjct: 999 PGLPG--------PPGPKGNPGLPGQPGLIGPPGLKGTIGDMGFPGPQG----VEGPPGP 1046
Query: 154 T 154
+
Sbjct: 1047 S 1047
Score = 36.6 bits (83), Expect = 0.10
Identities = 21/72 (29%), Positives = 28/72 (38%)
Query: 82 RGRAESPGVPVAKVVRAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPH 141
+G A PG+P ++ + Q P PP PGR L G G G P
Sbjct: 1375 KGDAGPPGIPGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQ 1434
Query: 142 GDTGSVEGAPQP 153
T ++G P P
Sbjct: 1435 PGTRGLDGPPGP 1446
Score = 30.8 bits (68), Expect = 5.7
Identities = 30/115 (26%), Positives = 40/115 (34%), Gaps = 5/115 (4%)
Query: 44 GEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRR----HGRWRGRAESPGVPVAKVVRAV 99
G+KG P P P +G + G G+ G H G PG K R
Sbjct: 75 GQKGDDGIPGPPGP-KGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGF 133
Query: 100 TSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAPQPT 154
P PP PG + G+ +L G G P + ++G P PT
Sbjct: 134 PGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGLPGPT 188
>gi|12751473 DNA cytosine methyltransferase 3 alpha isoform a [Homo
sapiens]
Length = 912
Score = 38.5 bits (88), Expect = 0.027
Identities = 48/190 (25%), Positives = 71/190 (37%), Gaps = 22/190 (11%)
Query: 54 PLDPGEGSKDTDSSAGRRGST---GRRHGRWRGRAE--SPGVPVAKVVRAVTSRQRASRR 108
P P G DT SSA R G RG+ E P KV R R+R
Sbjct: 2 PAMPSSGPGDTSSSAAEREEDRKDGEEQEEPRGKEERQEPSTTARKVGRP--GRKRKHPP 59
Query: 109 VPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAPQPTDNGFTPKCEIVGKD 168
V P+ P + S + A ++ GA+ P+GD PQP + G + G
Sbjct: 60 VESGDTPKDPAVISKSPSMAQDS--GASELLPNGDLEK-RSEPQP-EEGSPAGGQKGGAP 115
Query: 169 ALSALARASTKQCQQEIANVVCLHQAGSLMPKAVPRHCQLT-----------GKMSPGIQ 217
A A + + + + N C + G P + + T G++ G+
Sbjct: 116 AEGEGAAETLPEASRAVENGCCTPKEGRGAPAEAGKEQKETNIESMKMEGSRGRLRGGLG 175
Query: 218 WDESQAQQPM 227
W+ S Q+PM
Sbjct: 176 WESSLRQRPM 185
>gi|28559069 DNA cytosine methyltransferase 3 alpha isoform a [Homo
sapiens]
Length = 912
Score = 38.5 bits (88), Expect = 0.027
Identities = 48/190 (25%), Positives = 71/190 (37%), Gaps = 22/190 (11%)
Query: 54 PLDPGEGSKDTDSSAGRRGST---GRRHGRWRGRAE--SPGVPVAKVVRAVTSRQRASRR 108
P P G DT SSA R G RG+ E P KV R R+R
Sbjct: 2 PAMPSSGPGDTSSSAAEREEDRKDGEEQEEPRGKEERQEPSTTARKVGRP--GRKRKHPP 59
Query: 109 VPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGAPQPTDNGFTPKCEIVGKD 168
V P+ P + S + A ++ GA+ P+GD PQP + G + G
Sbjct: 60 VESGDTPKDPAVISKSPSMAQDS--GASELLPNGDLEK-RSEPQP-EEGSPAGGQKGGAP 115
Query: 169 ALSALARASTKQCQQEIANVVCLHQAGSLMPKAVPRHCQLT-----------GKMSPGIQ 217
A A + + + + N C + G P + + T G++ G+
Sbjct: 116 AEGEGAAETLPEASRAVENGCCTPKEGRGAPAEAGKEQKETNIESMKMEGSRGRLRGGLG 175
Query: 218 WDESQAQQPM 227
W+ S Q+PM
Sbjct: 176 WESSLRQRPM 185
>gi|16579828 zinc finger protein 91 [Homo sapiens]
Length = 570
Score = 38.5 bits (88), Expect = 0.027
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 40 EDEAGEKGRQRKPRPLDPGEGSKDTDSSA--GRRGSTGRRHGRWRGRAESPGVPVAKVVR 97
E + E G K P +P + + ++A G S R GR RGRA + A R
Sbjct: 12 EQQDQEGGEAAKAAPEEPQQRPPEAVAAAPAGTTSSRVLRGGRDRGRAAAAAAAAAVSRR 71
Query: 98 AVTSRQRASRRVPPAPPPEAPGRQ 121
R R P A PP+ PG+Q
Sbjct: 72 RKAEYPRRRRSSPSARPPDVPGQQ 95
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 38.1 bits (87), Expect = 0.035
Identities = 40/126 (31%), Positives = 47/126 (37%), Gaps = 28/126 (22%)
Query: 44 GEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAK----VVRAV 99
GE+GR P P G++ +D S G G G G A PG P A + AV
Sbjct: 220 GERGRVGAPGPA----GARGSDGSVGPVGPAGPI-----GSAGPPGFPGAPGPKGEIGAV 270
Query: 100 TSRQRASRRVP-----------PAPPPEAPGRQNLSGAAAGEALVGAAGFP----PHGDT 144
+ A P P PP PG L+GA L G AG P P G
Sbjct: 271 GNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIP 330
Query: 145 GSVEGA 150
G V A
Sbjct: 331 GPVGAA 336
>gi|156142197 euchromatic histone-lysine N-methyltransferase 2
isoform a [Homo sapiens]
Length = 1210
Score = 38.1 bits (87), Expect = 0.035
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 25/132 (18%)
Query: 39 EEDEAGEKGRQRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRA 98
EE+E E+ + + + E +++ + + R GS+GRR + + R +SP V
Sbjct: 302 EEEEEEEEEEEEEEEEEEEEEEDEESGNQSDRSGSSGRRKAKKKWRKDSPWVK------- 354
Query: 99 VTSRQRASRRVPPAPPPEAPGRQNLSGAAA-GEALVGAAGFPPHG-----------DTGS 146
SR+R R P A P SG + E +G+ P G DT S
Sbjct: 355 -PSRKRRKREPPRAKEPRGVNGVGSSGPSEYMEVPLGSLELPSEGTLSPNHAGVSNDTSS 413
Query: 147 VEGAPQPTDNGF 158
+E T+ GF
Sbjct: 414 LE-----TERGF 420
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 37.7 bits (86), Expect = 0.046
Identities = 34/101 (33%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 49 QRKPRPLDPGEGSKDTDSSAGRRGSTGRRHGRWRGRAESPGVPVAKVVRAVTSRQRASRR 108
+ +PRP P G T +A GS R WR AE A R V R A+R
Sbjct: 449 REEPRPPRPRRGPAPT-LAAQAAGSCRR----WRSTAEID----AADGRRVRPRAPAARV 499
Query: 109 VPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEG 149
P P P AP R+ L G A ++ A P G G G
Sbjct: 500 PGPGPSPSAPQRRLLYGCAGSDSECSAGRLGPLGRRGPAGG 540
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,331,994
Number of Sequences: 37866
Number of extensions: 1977200
Number of successful extensions: 8606
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 7830
Number of HSP's gapped (non-prelim): 889
length of query: 865
length of database: 18,247,518
effective HSP length: 111
effective length of query: 754
effective length of database: 14,044,392
effective search space: 10589471568
effective search space used: 10589471568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.