Guide to the Human Genome
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Name: HSPA1B Sequence: fasta or formatted (641aa) NCBI GI: 167466173
Description:

heat shock 70kDa protein 1B

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         57           3
 C cysteine            0.8          5           1
 D aspartate           7.0         45           2
 E glutamate           7.3         47           2
 F phenylalanine       3.9         25           2
 G glycine             8.6         55           3
 H histidine           1.1          7           1
 I isoleucine          6.6         42           2
 K lysine              7.8         50           3
 L leucine             7.8         50           4
 M methionine          1.4          9           1
 N asparagine          4.7         30           2
 P proline             3.7         24           2
 Q glutamine           4.2         27           1
 R arginine            4.8         31           2
 S serine              5.3         34           3
 T threonine           6.4         41           2
 V valine              7.0         45           2
 W tryptophan          0.3          2           1
 Y tyrosine            2.3         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock 70kDa protein 1B 
HSPA1A                1.000   heat shock 70kDa protein 1A 
HSPA1L                0.894   heat shock 70kDa protein 1-like 
HSPA8                 0.872   heat shock 70kDa protein 8 isoform 1 
HSPA2                 0.845   heat shock 70kDa protein 2 
HSPA6                 0.841   heat shock 70kDa protein 6 (HSP70B') 
HSPA8                 0.652   heat shock 70kDa protein 8 isoform 2 
HSPA5                 0.616   heat shock 70kDa protein 5 
HSPA9                 0.439   heat shock 70kDa protein 9 precursor 
HSPA14                0.235   heat shock 70kDa protein 14 isoform 1 
HSPA4                 0.218   heat shock 70kDa protein 4 
HSPA13                0.205   heat shock protein 70kDa family member 13 precursor ...
HSPA4L                0.202   heat shock 70kDa protein 4-like 
HSPH1                 0.197   heat shock 105kD 
HYOU1                 0.159   hypoxia up-regulated 1 precursor 
HYOU1                 0.159   hypoxia up-regulated 1 precursor 
ANKRD45               0.015   ankyrin repeat domain 45 
KIF15                 0.013   kinesin family member 15 
HSPA12B               0.011   heat shock 70kD protein 12B 
MYH11                 0.010   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.010   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.010   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.010   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
GOLGB1                0.010   golgi autoantigen, golgin subfamily b, macrogolgin ...
MYH9                  0.010   myosin, heavy polypeptide 9, non-muscle 
NEXN                  0.010   nexilin (F actin binding protein) 
MYH10                 0.009   myosin, heavy polypeptide 10, non-muscle 
ZRSR2                 0.008   U2 small nuclear RNA auxiliary factor 1-like 2 
TNNT2                 0.008   troponin T type 2, cardiac isoform 4 
CENPJ                 0.007   centromere protein J 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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