Guide to the Human Genome
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Name: HSPA9 Sequence: fasta or formatted (679aa) NCBI GI: 24234688
Description:

heat shock 70kDa protein 9 precursor

Referenced in:

Heat-Shock Proteins and Chaperonins
Mitochondria
Small RNAs in RNA Processing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         71           4
 C cysteine            0.7          5           1
 D aspartate           6.2         42           2
 E glutamate           7.8         53           2
 F phenylalanine       2.8         19           1
 G glycine             8.2         56           3
 H histidine           1.2          8           1
 I isoleucine          5.7         39           2
 K lysine              7.7         52           2
 L leucine             7.1         48           3
 M methionine          2.7         18           1
 N asparagine          4.0         27           2
 P proline             3.2         22           2
 Q glutamine           5.2         35           2
 R arginine            5.3         36           2
 S serine              6.0         41           3
 T threonine           6.2         42           2
 V valine              7.7         52           2
 W tryptophan          0.3          2           1
 Y tyrosine            1.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock 70kDa protein 9 precursor 
HSPA5                 0.443   heat shock 70kDa protein 5 
HSPA8                 0.426   heat shock 70kDa protein 8 isoform 1 
HSPA2                 0.424   heat shock 70kDa protein 2 
HSPA6                 0.420   heat shock 70kDa protein 6 (HSP70B') 
HSPA1B                0.419   heat shock 70kDa protein 1B 
HSPA1A                0.419   heat shock 70kDa protein 1A 
HSPA1L                0.415   heat shock 70kDa protein 1-like 
HSPA8                 0.351   heat shock 70kDa protein 8 isoform 2 
HSPA13                0.169   heat shock protein 70kDa family member 13 precursor ...
HSPA14                0.169   heat shock 70kDa protein 14 isoform 1 
HSPH1                 0.165   heat shock 105kD 
HSPA4L                0.155   heat shock 70kDa protein 4-like 
HSPA4                 0.150   heat shock 70kDa protein 4 
HYOU1                 0.111   hypoxia up-regulated 1 precursor 
HYOU1                 0.111   hypoxia up-regulated 1 precursor 
YTHDC1                0.013   splicing factor YT521-B isoform 2 
YTHDC1                0.013   splicing factor YT521-B isoform 1 
LOC283767             0.012   golgi autoantigen, golgin subfamily a-like 
BAZ2B                 0.011   bromodomain adjacent to zinc finger domain, 2B [Homo...
CCDC112               0.011   coiled-coil domain containing 112 isoform 1 
CCDC112               0.011   coiled-coil domain containing 112 isoform 2 
ERC2                  0.010   cytomatrix protein p110 
ERC1                  0.009   RAB6-interacting protein 2 isoform epsilon 
KTN1                  0.009   kinectin 1 isoform b 
KTN1                  0.009   kinectin 1 isoform a 
KTN1                  0.009   kinectin 1 isoform c 
KTN1                  0.009   kinectin 1 isoform a 
LOC283685             0.009   PREDICTED: golgi autoantigen, golgin subfamily a-li...
BCAP31                0.009   B-cell receptor-associated protein 31 isoform b [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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