Guide to the Human Genome
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Name: HSPA8 Sequence: fasta or formatted (493aa) NCBI GI: 24234686
Description:

heat shock 70kDa protein 8 isoform 2

Referenced in:

Heat-Shock Proteins and Chaperonins
Small RNAs in RNA Processing

Other entries for this name:
alt prot [646aa] heat shock 70kDa protein 8 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         41           3
 C cysteine            0.4          2           1
 D aspartate           6.9         34           2
 E glutamate           6.1         30           2
 F phenylalanine       4.3         21           2
 G glycine             9.3         46           3
 H histidine           1.2          6           1
 I isoleucine          6.3         31           2
 K lysine              6.7         33           2
 L leucine             7.3         36           4
 M methionine          2.2         11           1
 N asparagine          4.7         23           2
 P proline             4.1         20           2
 Q glutamine           3.4         17           1
 R arginine            4.9         24           2
 S serine              5.5         27           3
 T threonine           8.1         40           2
 V valine              7.7         38           2
 W tryptophan          0.2          1           1
 Y tyrosine            2.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock 70kDa protein 8 isoform 2 
HSPA8                 0.937   heat shock 70kDa protein 8 isoform 1 
HSPA2                 0.859   heat shock 70kDa protein 2 
HSPA1B                0.851   heat shock 70kDa protein 1B 
HSPA1A                0.851   heat shock 70kDa protein 1A 
HSPA1L                0.834   heat shock 70kDa protein 1-like 
HSPA6                 0.805   heat shock 70kDa protein 6 (HSP70B') 
HSPA5                 0.641   heat shock 70kDa protein 5 
HSPA9                 0.479   heat shock 70kDa protein 9 precursor 
HSPA14                0.286   heat shock 70kDa protein 14 isoform 1 
HSPA13                0.265   heat shock protein 70kDa family member 13 precursor ...
HSPA4                 0.259   heat shock 70kDa protein 4 
HSPA4L                0.249   heat shock 70kDa protein 4-like 
HSPH1                 0.247   heat shock 105kD 
HYOU1                 0.208   hypoxia up-regulated 1 precursor 
HYOU1                 0.208   hypoxia up-regulated 1 precursor 
GSG1                  0.011   germ cell associated 1 isoform 4 
GSG1                  0.011   germ cell associated 1 isoform 2 
HOXD9                 0.008   homeobox D9 
ST13                  0.008   heat shock 70kD protein binding protein 
TPM2                  0.007   tropomyosin 2 (beta) isoform 2 
TPM2                  0.007   tropomyosin 2 (beta) isoform 3 
FZD8                  0.007   frizzled 8 
YEATS2                0.007   YEATS domain containing 2 
FLNA                  0.007   filamin A, alpha isoform 2 
FLNA                  0.007   filamin A, alpha isoform 1 
RPS6KC1               0.007   ribosomal protein S6 kinase, 52kDa, polypeptide 1 i...
RPS6KC1               0.007   ribosomal protein S6 kinase, 52kDa, polypeptide 1 is...
IMPAD1                0.006   inositol monophosphatase domain containing 1 
G3BP1                 0.006   Ras-GTPase-activating protein SH3-domain-binding prot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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