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Search of human proteins with 166235163
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|166235163 nuclear fragile X mental retardation protein
interacting protein 1 [Homo sapiens]
(495 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|166235163 nuclear fragile X mental retardation protein intera... 1036 0.0
gi|33356148 formin-like 1 [Homo sapiens] 50 5e-06
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 46 7e-05
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 46 7e-05
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 46 7e-05
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 46 7e-05
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 46 9e-05
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 46 9e-05
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 3e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 44 3e-04
gi|11386183 WAS protein family, member 2 [Homo sapiens] 44 3e-04
gi|56118221 amyloid beta (A4) precursor protein-binding, family ... 44 4e-04
gi|18959210 WIRE protein [Homo sapiens] 43 8e-04
gi|146134388 YLP motif containing 1 [Homo sapiens] 42 0.001
gi|51702248 G protein-coupled receptor associated sorting protei... 42 0.002
gi|19923967 G protein-coupled receptor associated sorting protei... 42 0.002
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho... 42 0.002
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho... 42 0.002
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho... 42 0.002
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom... 42 0.002
gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming... 42 0.002
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 41 0.002
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 41 0.002
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 41 0.003
gi|210032580 SET domain containing 1B [Homo sapiens] 41 0.003
gi|153792074 proline rich 12 [Homo sapiens] 41 0.003
gi|124378039 SEC16 homolog A [Homo sapiens] 40 0.004
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 40 0.005
gi|156415990 Y box binding protein 2 [Homo sapiens] 40 0.005
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 40 0.005
>gi|166235163 nuclear fragile X mental retardation protein
interacting protein 1 [Homo sapiens]
Length = 495
Score = 1036 bits (2680), Expect = 0.0
Identities = 495/495 (100%), Positives = 495/495 (100%)
Query: 1 MAEPTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSK 60
MAEPTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSK
Sbjct: 1 MAEPTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSK 60
Query: 61 PSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWNFHASTSWYW 120
PSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWNFHASTSWYW
Sbjct: 61 PSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWNFHASTSWYW 120
Query: 121 RQSSDRFPRHQKSFNPAVKNSYYPRKYDAKFTDFSLPPSRKQKKKKRKEPVFHFFCDTCD 180
RQSSDRFPRHQKSFNPAVKNSYYPRKYDAKFTDFSLPPSRKQKKKKRKEPVFHFFCDTCD
Sbjct: 121 RQSSDRFPRHQKSFNPAVKNSYYPRKYDAKFTDFSLPPSRKQKKKKRKEPVFHFFCDTCD 180
Query: 181 RGFKNQEKYDKHMSEHTKCPELDCSFTAHEKIVQFHWRNMHAPGMKKIKLDTPEEIARWR 240
RGFKNQEKYDKHMSEHTKCPELDCSFTAHEKIVQFHWRNMHAPGMKKIKLDTPEEIARWR
Sbjct: 181 RGFKNQEKYDKHMSEHTKCPELDCSFTAHEKIVQFHWRNMHAPGMKKIKLDTPEEIARWR 240
Query: 241 EERRKNYPTLANIERKKKLKLEKEKRGAVLTTTQYGKMKGMSRHSQMAKIRSPGKNHKWK 300
EERRKNYPTLANIERKKKLKLEKEKRGAVLTTTQYGKMKGMSRHSQMAKIRSPGKNHKWK
Sbjct: 241 EERRKNYPTLANIERKKKLKLEKEKRGAVLTTTQYGKMKGMSRHSQMAKIRSPGKNHKWK 300
Query: 301 NDNSRQRAVTGSGSHLCDLKLEGPPEANADPLGVLINSDSESDKEEKPQHSVIPKEVTPA 360
NDNSRQRAVTGSGSHLCDLKLEGPPEANADPLGVLINSDSESDKEEKPQHSVIPKEVTPA
Sbjct: 301 NDNSRQRAVTGSGSHLCDLKLEGPPEANADPLGVLINSDSESDKEEKPQHSVIPKEVTPA 360
Query: 361 LCSLMSSYGSLSGSESEPEETPIKTEADVLAENQVLDSSAPKSPSQDVKATVRNFSEAKS 420
LCSLMSSYGSLSGSESEPEETPIKTEADVLAENQVLDSSAPKSPSQDVKATVRNFSEAKS
Sbjct: 361 LCSLMSSYGSLSGSESEPEETPIKTEADVLAENQVLDSSAPKSPSQDVKATVRNFSEAKS 420
Query: 421 ENRKKSFEKTNPKRKKDYHNYQTLFEPRTHHPYLLEMLLAPDIRHERNVILQCVRYIIKK 480
ENRKKSFEKTNPKRKKDYHNYQTLFEPRTHHPYLLEMLLAPDIRHERNVILQCVRYIIKK
Sbjct: 421 ENRKKSFEKTNPKRKKDYHNYQTLFEPRTHHPYLLEMLLAPDIRHERNVILQCVRYIIKK 480
Query: 481 DFFGLDTNSAKSKDV 495
DFFGLDTNSAKSKDV
Sbjct: 481 DFFGLDTNSAKSKDV 495
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 50.1 bits (118), Expect = 5e-06
Identities = 39/98 (39%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 10 TPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPM 69
TP G A PT P D AP + A PPPPPPL LP+ P S P
Sbjct: 510 TPSGGDAPTPGVPTGSPSPDLAPAAEPAPGAA--PPPPPPLPG-LPSPQEAPPSA---PP 563
Query: 70 EAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSG 107
+A LPG+P P A LPG PP P P P G
Sbjct: 564 QAPPLPGSPEPPPAPPLPGDLPP-----PPPPPPPPPG 596
Score = 34.3 bits (77), Expect = 0.27
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 11 PIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPME 70
P A P P PL + P + LPPPPPP G P PP
Sbjct: 552 PSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTDGPVPPPPPPPPPP 611
Query: 71 AQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQ 102
P A D+++ PG + A+ P+ ++
Sbjct: 612 PGGPPDALGRRDSELGPGVK----AKKPIQTK 639
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 46.2 bits (108), Expect = 7e-05
Identities = 35/125 (28%), Positives = 48/125 (38%), Gaps = 21/125 (16%)
Query: 11 PIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKP--------- 61
P+G P P+ P + P W PPPPPP +SS+ ++ P
Sbjct: 474 PMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTT 533
Query: 62 ---SSESQPPMEAQ-----SLPGAPP----PFDAQILPGAQPPFDAQSPLDSQPQPSGQP 109
+ S PP + Q + PGAP P + PG QPP +P P P G
Sbjct: 534 TSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPPPPPPGSA 593
Query: 110 WNFHA 114
+A
Sbjct: 594 GMMYA 598
Score = 39.3 bits (90), Expect = 0.008
Identities = 22/70 (31%), Positives = 26/70 (37%)
Query: 11 PIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPME 70
P+ P L P P PP + M +A PPPPPP+ S PP
Sbjct: 568 PLPPGVQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPPMDPSNFVTMMGMGVAGMPPFG 627
Query: 71 AQSLPGAPPP 80
P PPP
Sbjct: 628 MPPAPPPPPP 637
Score = 30.8 bits (68), Expect = 3.0
Identities = 35/134 (26%), Positives = 41/134 (30%), Gaps = 27/134 (20%)
Query: 15 HASPELTPTLGPLSDTAPPRDSWMFWAMLPPPP-------------PPLTSSLPAAGSKP 61
H P LT G P W PPPP PP+ L GS P
Sbjct: 399 HPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYL---GSTP 455
Query: 62 SSES----------QPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWN 111
PP +P PPP Q P P QP P P +
Sbjct: 456 VGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSS 515
Query: 112 FHA-STSWYWRQSS 124
A ST W+Q++
Sbjct: 516 SMASSTPLPWQQNT 529
Score = 29.3 bits (64), Expect = 8.6
Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 11/103 (10%)
Query: 10 TPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPM 69
TP+ W + T T + + PP A P P + + P + P
Sbjct: 521 TPLPWQQNTTTTTTSAG-TGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPP 579
Query: 70 EAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWNF 112
A P PPP A ++ PP P P P NF
Sbjct: 580 GAPPPPPPPPPGSAGMMYAPPPP----------PPPPMDPSNF 612
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 46.2 bits (108), Expect = 7e-05
Identities = 51/214 (23%), Positives = 77/214 (35%), Gaps = 27/214 (12%)
Query: 16 ASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLP 75
+S +L P L P ++PP + PPPP T LPA S S P + +
Sbjct: 756 SSGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATA 815
Query: 76 GAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWNFHASTSWYWRQSSDRFPRHQKSFN 135
+P P + + + P PL S P G P +S+S SS F S +
Sbjct: 816 QSPLPILSPTVSPSPSPIPPVEPLMSAASP-GPPTLSSSSSS---SSSSSSFSSSSSSSS 871
Query: 136 P---------AVKNSYYPRKYDAKFTDFSLPPSRKQKKKKRKEPVF-------------- 172
P +V +S + F + K R+EP
Sbjct: 872 PSPPPLSAISSVVSSGDNLEASLPMISFKQEELENEGLKPREEPQSAAEQDVVVQETFNK 931
Query: 173 HFFCDTCDRGFKNQEKYDKHMSEHTKCPELDCSF 206
+F C+ C+ F + + KH+S H + C F
Sbjct: 932 NFVCNVCESPFLSIKDLTKHLSIHAEEWPFKCEF 965
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 46.2 bits (108), Expect = 7e-05
Identities = 51/214 (23%), Positives = 77/214 (35%), Gaps = 27/214 (12%)
Query: 16 ASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLP 75
+S +L P L P ++PP + PPPP T LPA S S P + +
Sbjct: 957 SSGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATA 1016
Query: 76 GAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWNFHASTSWYWRQSSDRFPRHQKSFN 135
+P P + + + P PL S P G P +S+S SS F S +
Sbjct: 1017 QSPLPILSPTVSPSPSPIPPVEPLMSAASP-GPPTLSSSSSS---SSSSSSFSSSSSSSS 1072
Query: 136 P---------AVKNSYYPRKYDAKFTDFSLPPSRKQKKKKRKEPVF-------------- 172
P +V +S + F + K R+EP
Sbjct: 1073 PSPPPLSAISSVVSSGDNLEASLPMISFKQEELENEGLKPREEPQSAAEQDVVVQETFNK 1132
Query: 173 HFFCDTCDRGFKNQEKYDKHMSEHTKCPELDCSF 206
+F C+ C+ F + + KH+S H + C F
Sbjct: 1133 NFVCNVCESPFLSIKDLTKHLSIHAEEWPFKCEF 1166
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 46.2 bits (108), Expect = 7e-05
Identities = 51/214 (23%), Positives = 77/214 (35%), Gaps = 27/214 (12%)
Query: 16 ASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLP 75
+S +L P L P ++PP + PPPP T LPA S S P + +
Sbjct: 957 SSGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSPLSNATA 1016
Query: 76 GAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWNFHASTSWYWRQSSDRFPRHQKSFN 135
+P P + + + P PL S P G P +S+S SS F S +
Sbjct: 1017 QSPLPILSPTVSPSPSPIPPVEPLMSAASP-GPPTLSSSSSS---SSSSSSFSSSSSSSS 1072
Query: 136 P---------AVKNSYYPRKYDAKFTDFSLPPSRKQKKKKRKEPVF-------------- 172
P +V +S + F + K R+EP
Sbjct: 1073 PSPPPLSAISSVVSSGDNLEASLPMISFKQEELENEGLKPREEPQSAAEQDVVVQETFNK 1132
Query: 173 HFFCDTCDRGFKNQEKYDKHMSEHTKCPELDCSF 206
+F C+ C+ F + + KH+S H + C F
Sbjct: 1133 NFVCNVCESPFLSIKDLTKHLSIHAEEWPFKCEF 1166
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 45.8 bits (107), Expect = 9e-05
Identities = 34/117 (29%), Positives = 45/117 (38%), Gaps = 18/117 (15%)
Query: 11 PIGWHASPELTPTLGPLSDTAPPRDSWMFWAML-----PPPPPPLTSSLPAAGSKPSSES 65
P+ SP +P L PL+ +P + + +L PPP PP+ + S P S S
Sbjct: 629 PLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPS 688
Query: 66 Q------------PPMEAQSLPGAPPPFDAQILPGAQ-PPFDAQSPLDSQPQPSGQP 109
PP++ P A PP P Q PP A PL P P P
Sbjct: 689 ATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASP 745
Score = 45.8 bits (107), Expect = 9e-05
Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 4 PTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPP--PPLTSSLPAAGSKP 61
P+ + P ASP ++P+ P S APP + + P PP PP++ S P
Sbjct: 669 PSPPVQAPFSPPASPPVSPSATPPSQ-APPSLAAPPLQVPPSPPASPPMSPSATPPPQAP 727
Query: 62 SSESQPPMEAQSLPGAPPPFDAQILPGAQ-PPFDAQSPLDSQPQP 105
+ PP++ P A PP P + PP A PL P P
Sbjct: 728 PPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSP 772
Score = 38.5 bits (88), Expect = 0.014
Identities = 34/105 (32%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 11 PIGWHASPELTPTLGPLSDTAPPRDSWMFWA---MLPPPPPPLTSSLPAAGSKPSSE--- 64
P+ SP +P + P S T PPR + A +PP PP P A P +
Sbjct: 734 PLQVPPSPPASPPMSP-SATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPAL 792
Query: 65 SQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQP 109
+ PP++A P A P A P A P SPL + P P P
Sbjct: 793 ATPPLQALPSPPASFPGQAPFSPSASLP---MSPL-ATPPPQAPP 833
Score = 37.7 bits (86), Expect = 0.024
Identities = 33/102 (32%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 10 TPIGWHASPELTP--TLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQP 67
+P G A P P PL T PP L PP P S+ P+ + PS + P
Sbjct: 308 SPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSP---SAPPSLQTLPSPPATP 364
Query: 68 PMEAQSLPGAPP---PFDAQILPGAQPPFDAQSP-LDSQPQP 105
P +A PP P Q +P Q P SP L + P P
Sbjct: 365 PSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSP 406
Score = 37.7 bits (86), Expect = 0.024
Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 11 PIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSK---PSSESQP 67
P+ ++P TP L AP L PP PLT+ P S P ++ P
Sbjct: 545 PLQTASAPLTTPHLETPPCPAP--------CPLQAPPSPLTTPPPETPSSIATPPPQAPP 596
Query: 68 PMEAQSLPGAP-PPFDAQILPGAQ-PPFDAQSPLDSQPQPSGQP 109
+ + L G P PP P Q PP A PL + P P P
Sbjct: 597 ALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASP 640
Score = 37.7 bits (86), Expect = 0.024
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 16 ASPELTPTLGPLSDTAPPRDSWMFWAM-LPPPPPPLTSSLPAAGSKPSSESQPPMEAQSL 74
ASP ++P+ P PP + PP PP++ S P + PP++
Sbjct: 712 ASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPS 771
Query: 75 PGAPPPFDAQILPGAQ-PPFDAQSPLDSQPQP 105
P A P P Q PP A PL + P P
Sbjct: 772 PPASLPMSPLAKPPPQAPPALATPPLQALPSP 803
Score = 36.2 bits (82), Expect = 0.070
Identities = 35/124 (28%), Positives = 42/124 (33%), Gaps = 24/124 (19%)
Query: 5 TSDFETPIGWHASPELTPTLGPLSD-TAPPRDSWMFWAMLPPPPPPLTSSLPAAG----- 58
T ETP P P P S T PP ++ A PP PP +S P G
Sbjct: 555 TPHLETP----PCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPP 610
Query: 59 ---------SKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPP-----FDAQSPLDSQPQ 104
P + PP++A P A PP P Q P Q+P P
Sbjct: 611 LSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPS 670
Query: 105 PSGQ 108
P Q
Sbjct: 671 PPVQ 674
Score = 33.9 bits (76), Expect = 0.35
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 41 AMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPP----FDAQ 96
A PPP L + PAA S+ + PP+ + PGAP P+ PG+ ++ +
Sbjct: 923 AASPPPDAELAACHPAAWSRGPA---PPLAFRGAPGAPLPWPPATGPGSADGLCTIYETE 979
Query: 97 SPLDSQPQP 105
P + P P
Sbjct: 980 GPESATPAP 988
Score = 33.1 bits (74), Expect = 0.60
Identities = 33/110 (30%), Positives = 39/110 (35%), Gaps = 9/110 (8%)
Query: 4 PTSDFETPIGWHASPELTPTLG--PLS-DTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSK 60
P S TP P + P L PL +PP M PPP P + P +
Sbjct: 746 PMSPSATP-----PPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQAL 800
Query: 61 PSSESQPPMEAQSLPGAPPPFDAQILPGAQ-PPFDAQSPLDSQPQPSGQP 109
PS + P +A P A P P Q PP A L P P P
Sbjct: 801 PSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASP 850
Score = 31.6 bits (70), Expect = 1.7
Identities = 30/94 (31%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
Query: 18 PELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGA 77
P++TP P D AP A+ P PL + P+ G+K P A LP
Sbjct: 283 PQVTP---PRKDAAP--------ALGPLSSSPLATPSPS-GTKARPVPPPDNAATPLPAT 330
Query: 78 PPPFD--AQILPGAQPPFDAQSPLDSQPQPSGQP 109
PP A LP A P A L + P P P
Sbjct: 331 LPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATP 364
Score = 31.2 bits (69), Expect = 2.3
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 17 SPELTPTLGPLSDTAPPRDSWMFWAML--PPPPPPLTSSLPAAGSKPS-----SESQPPM 69
SP + + PL+ T PP+ + A L PP PP + +L A P+ S S P +
Sbjct: 814 SPSASLPMSPLA-TPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRL 872
Query: 70 EAQSLPGAPPP 80
PG PPP
Sbjct: 873 TLALAPGPPPP 883
Score = 30.8 bits (68), Expect = 3.0
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 18/90 (20%)
Query: 20 LTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPP 79
+ P L S APP L PP LT+ P + PS + PP++ S P P
Sbjct: 508 IMPPLETQSSLAPPS--------LQTPPASLTT--PPLENLPSL-APPPLQTASAPLTTP 556
Query: 80 PFDAQILPGAQPPFDAQSPLDSQPQPSGQP 109
+ PP A PL + P P P
Sbjct: 557 HLET-------PPCPAPCPLQAPPSPLTTP 579
Score = 29.6 bits (65), Expect = 6.6
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 18 PELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGA 77
P P+ P S T PP + +PP P + + P+ + PS + ++A + G+
Sbjct: 361 PATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSPLALSSLQATTSLGS 420
Query: 78 PPPFDAQILPGAQPPFDAQSPLDSQPQPSGQP 109
P A P Q+ L S +P+ P
Sbjct: 421 -PTLQATHSFLTMSPRQTQASLTSPSRPASTP 451
Score = 29.3 bits (64), Expect = 8.6
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 41 AMLPPP-PPPLTSSLPAAGSKPSS--ESQPPMEAQSLPGAPPPFDAQILPGA---QPPFD 94
A+ PP PP + PA G SS + P ++ P PP A LP PP
Sbjct: 279 ALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPLA 338
Query: 95 AQSPLDSQPQPSGQP 109
PL + P PS P
Sbjct: 339 TPLPL-APPSPSAPP 352
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 45.8 bits (107), Expect = 9e-05
Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 21/118 (17%)
Query: 11 PIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKP--------- 61
P+G P P+ P + P W PPPPPP +SS+ ++ P
Sbjct: 474 PMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTT 533
Query: 62 ---SSESQPPMEAQ-----SLPGAPP----PFDAQILPGAQPPFDAQSPLDSQPQPSG 107
+ S PP + Q + PGAP P + PG QPP +P P P G
Sbjct: 534 TSAGTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPPPPPPG 591
Score = 30.8 bits (68), Expect = 3.0
Identities = 35/134 (26%), Positives = 41/134 (30%), Gaps = 27/134 (20%)
Query: 15 HASPELTPTLGPLSDTAPPRDSWMFWAMLPPPP-------------PPLTSSLPAAGSKP 61
H P LT G P W PPPP PP+ L GS P
Sbjct: 399 HPLPSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYL---GSTP 455
Query: 62 SSES----------QPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWN 111
PP +P PPP Q P P QP P P +
Sbjct: 456 VGSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSS 515
Query: 112 FHA-STSWYWRQSS 124
A ST W+Q++
Sbjct: 516 SMASSTPLPWQQNT 529
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 43.9 bits (102), Expect = 3e-04
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 21/116 (18%)
Query: 11 PIGWHASPELTPTLGPLSDTAPPRDSWMFWAML-----------------PPPPPPLTSS 53
P+ SP +P L PL+ +P + + +L PP PP++ S
Sbjct: 404 PLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPS 463
Query: 54 LPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQP 109
P S + PP++ P A PP P A PP A PL + P +P
Sbjct: 464 ATPPSQAPPSLAAPPLQVPPSPPASPPMS----PSATPPPQAPPPLAAPPLQLAKP 515
Score = 40.8 bits (94), Expect = 0.003
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 4 PTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSS 63
P+ + P ASP ++P+ P S P + +PP PP P+A P
Sbjct: 444 PSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPL--QVPPSPPASPPMSPSA--TPPP 499
Query: 64 ESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQP 105
++ PP+ A L A PP A PP A PL + P P
Sbjct: 500 QAPPPLAAPPLQLAKPPPQA-------PPALATPPLQALPSP 534
Score = 40.0 bits (92), Expect = 0.005
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 16 ASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLP 75
ASP ++P+ P PP + PPP P + P + PS + P +A P
Sbjct: 487 ASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSP 546
Query: 76 GAPPPFDAQILPGAQ-PPFDAQSPLDSQPQPSGQP 109
A P P Q PP A L P P P
Sbjct: 547 SASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASP 581
Score = 38.1 bits (87), Expect = 0.019
Identities = 34/125 (27%), Positives = 46/125 (36%), Gaps = 34/125 (27%)
Query: 19 ELTPTLGPLSDT--------------------APPRDSWMFWAMLPPPP--PPLTSSLPA 56
+ P LGPLS + A P S + + P P PP S+ P+
Sbjct: 291 DAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPS 350
Query: 57 AGSKPSSESQPPMEAQSLPGAP-----------PPFDAQILPGAQ-PPFDAQSPLDSQPQ 104
+ PS + PP +A + G+P PP P Q PP A PL + P
Sbjct: 351 LQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPS 410
Query: 105 PSGQP 109
P P
Sbjct: 411 PPASP 415
Score = 34.3 bits (77), Expect = 0.27
Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 1 MAEPTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSK 60
+A P+ + SP TP + P + PP PL + P A
Sbjct: 340 LAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQA--- 396
Query: 61 PSSESQPPMEAQSLPGAPPPFDAQILPGAQPP-----FDAQSPLDSQPQPSGQ 108
P + + PP++A P A PP P Q P Q+P P P Q
Sbjct: 397 PPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQ 449
Score = 33.9 bits (76), Expect = 0.35
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 41 AMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPP----FDAQ 96
A PPP L + PAA S+ + PP+ + PGAP P+ PG+ ++ +
Sbjct: 654 AASPPPDAELAACHPAAWSRGPA---PPLAFRGAPGAPLPWPPATGPGSADGLCTIYETE 710
Query: 97 SPLDSQPQP 105
P + P P
Sbjct: 711 GPESATPAP 719
Score = 31.2 bits (69), Expect = 2.3
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 17 SPELTPTLGPLSDTAPPRDSWMFWAML--PPPPPPLTSSLPAAGSKPS-----SESQPPM 69
SP + + PL+ T PP+ + A L PP PP + +L A P+ S S P +
Sbjct: 545 SPSASLPMSPLA-TPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRL 603
Query: 70 EAQSLPGAPPP 80
PG PPP
Sbjct: 604 TLALAPGPPPP 614
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 43.9 bits (102), Expect = 3e-04
Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 21/116 (18%)
Query: 11 PIGWHASPELTPTLGPLSDTAPPRDSWMFWAML-----------------PPPPPPLTSS 53
P+ SP +P L PL+ +P + + +L PP PP++ S
Sbjct: 365 PLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPS 424
Query: 54 LPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQP 109
P S + PP++ P A PP P A PP A PL + P +P
Sbjct: 425 ATPPSQAPPSLAAPPLQVPPSPPASPPMS----PSATPPPQAPPPLAAPPLQLAKP 476
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 20/103 (19%)
Query: 19 ELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAP 78
+ P LGPLS + S P PP S+ P+ + PS + PP +A + G+P
Sbjct: 282 DAAPALGPLSSSPLATPS--------PSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSP 333
Query: 79 -----------PPFDAQILPGAQ-PPFDAQSPLDSQPQPSGQP 109
PP P Q PP A PL + P P P
Sbjct: 334 TLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASP 376
Score = 40.8 bits (94), Expect = 0.003
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 4 PTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSS 63
P+ + P ASP ++P+ P S P + +PP PP P+A P
Sbjct: 405 PSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPL--QVPPSPPASPPMSPSA--TPPP 460
Query: 64 ESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQP 105
++ PP+ A L A PP A PP A PL + P P
Sbjct: 461 QAPPPLAAPPLQLAKPPPQA-------PPALATPPLQALPSP 495
Score = 40.0 bits (92), Expect = 0.005
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 16 ASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLP 75
ASP ++P+ P PP + PPP P + P + PS + P +A P
Sbjct: 448 ASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSP 507
Query: 76 GAPPPFDAQILPGAQ-PPFDAQSPLDSQPQPSGQP 109
A P P Q PP A L P P P
Sbjct: 508 SASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASP 542
Score = 33.9 bits (76), Expect = 0.35
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Query: 17 SPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPG 76
SP TP + P + PP PL + P A P + + PP++A P
Sbjct: 317 SPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQA---PPALALPPLQAPPSPP 373
Query: 77 APPPFDAQILPGAQPP-----FDAQSPLDSQPQPSGQ 108
A PP P Q P Q+P P P Q
Sbjct: 374 ASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQ 410
Score = 33.9 bits (76), Expect = 0.35
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 41 AMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPP----FDAQ 96
A PPP L + PAA S+ + PP+ + PGAP P+ PG+ ++ +
Sbjct: 615 AASPPPDAELAACHPAAWSRGPA---PPLAFRGAPGAPLPWPPATGPGSADGLCTIYETE 671
Query: 97 SPLDSQPQP 105
P + P P
Sbjct: 672 GPESATPAP 680
Score = 32.7 bits (73), Expect = 0.78
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 41 AMLPPP-PPPLTSSLPAAGSKPSSE-SQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSP 98
A+ PP PP + PA G SS + P A P APP P A PP A +
Sbjct: 270 ALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTS 329
Query: 99 LDS 101
L S
Sbjct: 330 LGS 332
Score = 31.2 bits (69), Expect = 2.3
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 17 SPELTPTLGPLSDTAPPRDSWMFWAML--PPPPPPLTSSLPAAGSKPS-----SESQPPM 69
SP + + PL+ T PP+ + A L PP PP + +L A P+ S S P +
Sbjct: 506 SPSASLPMSPLA-TPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRL 564
Query: 70 EAQSLPGAPPP 80
PG PPP
Sbjct: 565 TLALAPGPPPP 575
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 43.9 bits (102), Expect = 3e-04
Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 11 PIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPME 70
P+G P+ P P PP + +PPPPPP+ P PS S PP
Sbjct: 305 PLGSPPGPK--PGFAPPPAPPPPPPPMIG---IPPPPPPVGFGSPGTPPPPSPPSFPPHP 359
Query: 71 AQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQP 109
+ P PPP A P PP +Q + P P P
Sbjct: 360 DFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPPP 398
Score = 40.8 bits (94), Expect = 0.003
Identities = 35/103 (33%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 11 PIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAG----SKPSSESQ 66
P+G+ SP P P S PP + A PPPPPP + P S+P+ +
Sbjct: 338 PVGF-GSPGTPPPPSPPS--FPPHPDF---AAPPPPPPPPAADYPTLPPPPLSQPTGGAP 391
Query: 67 PPMEAQSLPGAPPP--FDAQILPGAQPPF-DAQSPLDSQPQPS 106
PP PG PPP A P PP D P S P S
Sbjct: 392 PPPPPPPPPGPPPPPFTGADGQPAIPPPLSDTTKPKSSLPAVS 434
Score = 38.9 bits (89), Expect = 0.011
Identities = 33/112 (29%), Positives = 37/112 (33%), Gaps = 4/112 (3%)
Query: 2 AEPTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKP 61
A P P A P P P PP + + PPPP S P
Sbjct: 303 APPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPPSFPPHPDFA 362
Query: 62 SSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQP----SGQP 109
+ PP A P PPP +Q GA PP P P P GQP
Sbjct: 363 APPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPPPPPGPPPPPFTGADGQP 414
Score = 33.5 bits (75), Expect = 0.46
Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 28 SDTAPPRDSWMFWAMLPPPPPPLTSSL-PAAG-SKPSSESQPPMEAQSLPGAPPPFDAQI 85
S A P+ S + PPP PPL S P G + P + PP +P PPP
Sbjct: 284 SGLAGPKRSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFG- 342
Query: 86 LPGAQPPFDAQSPLDSQPQP 105
PG PP SP P P
Sbjct: 343 SPGTPPP---PSPPSFPPHP 359
Score = 30.8 bits (68), Expect = 3.0
Identities = 18/60 (30%), Positives = 21/60 (35%)
Query: 46 PPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQP 105
PPPP S P + S + P + P PPP P P A P P P
Sbjct: 268 PPPPAEFSYPVDNQRGSGLAGPKRSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPP 327
>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein [Homo sapiens]
Length = 666
Score = 43.5 bits (101), Expect = 4e-04
Identities = 34/98 (34%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 17 SPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSS---------LPAAGSKPSSESQP 67
S + P LG D A PR + LPPPPP SS L A G+ P
Sbjct: 490 SKDKKPALGNHHDPAVPRAPHAPKSSLPPPPPVRRSSDTSGSPATPLKAKGTGGGGLPAP 549
Query: 68 PMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQP 105
P + P PPP D LP P F + P D P P
Sbjct: 550 PDDFLPPPPPPPPLDDPELPPPPPDF-MEPPPDFVPPP 586
Score = 32.3 bits (72), Expect = 1.0
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 32 PPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAP 78
PP + + + LPPPPPP PA P S PP A+ P P
Sbjct: 587 PPSYAGIAGSELPPPPPP--PPAPAPAPVPDSARPPPAVAKRPPVPP 631
Score = 29.3 bits (64), Expect = 8.6
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 10/61 (16%)
Query: 45 PPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQ 104
PPPPP P P S + LP PPP PP A +P+ +
Sbjct: 569 PPPPPDFMEPPPDFVPPPPPSYAGIAGSELPPPPPP----------PPAPAPAPVPDSAR 618
Query: 105 P 105
P
Sbjct: 619 P 619
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 42.7 bits (99), Expect = 8e-04
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 23 TLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFD 82
T GP+ APP + ++L PPP P+ G+ P PP+ APPP
Sbjct: 287 TPGPVRGLAPPPPTSASPSLLSNRPPPPARDPPSRGAAPPPP--PPVIRNGARDAPPPPP 344
Query: 83 AQILPGAQPPFDAQSPLDSQPQPSGQP 109
+ G++PP + P P+G P
Sbjct: 345 PYRMHGSEPPSRGKPPPPPSRTPAGPP 371
Score = 36.6 bits (83), Expect = 0.054
Identities = 27/87 (31%), Positives = 31/87 (35%), Gaps = 14/87 (16%)
Query: 4 PTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAA------ 57
P P ASP L P P RD A PPPPP + + A
Sbjct: 290 PVRGLAPPPPTSASPSLLSNRPP----PPARDPPSRGAAPPPPPPVIRNGARDAPPPPPP 345
Query: 58 ----GSKPSSESQPPMEAQSLPGAPPP 80
GS+P S +PP P PPP
Sbjct: 346 YRMHGSEPPSRGKPPPPPSRTPAGPPP 372
Score = 31.6 bits (70), Expect = 1.7
Identities = 33/109 (30%), Positives = 41/109 (37%), Gaps = 20/109 (18%)
Query: 16 ASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTS--SLPAAGSKPSSESQP--PMEA 71
A P + P P++ P L PPPPP +P S P++ES P P
Sbjct: 226 APPPVKPPPSPVNIRTGPSGQ-----SLAPPPPPYRQPPGVPNGPSSPTNESAPELPQRH 280
Query: 72 QSL----PG------APPPFDAQ-ILPGAQPPFDAQSPLDSQPQPSGQP 109
SL PG PPP A L +PP A+ P P P
Sbjct: 281 NSLHRKTPGPVRGLAPPPPTSASPSLLSNRPPPPARDPPSRGAAPPPPP 329
Score = 30.4 bits (67), Expect = 3.9
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 27/81 (33%)
Query: 44 PPPPPP------LTSSLPAAGSKPSSESQ----PPMEAQSL------PGAPPPFDAQILP 87
PPPPPP + LP SK + ++ PP Q L P APPP
Sbjct: 177 PPPPPPGRRANAPPTPLPMHSSKAPAYNREKPLPPTPGQRLHPGREGPPAPPP------- 229
Query: 88 GAQPPFDAQSPLDSQPQPSGQ 108
+PP SP++ + PSGQ
Sbjct: 230 -VKPP---PSPVNIRTGPSGQ 246
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 42.4 bits (98), Expect = 0.001
Identities = 41/123 (33%), Positives = 48/123 (39%), Gaps = 27/123 (21%)
Query: 4 PTSDFETPIGWHASPELTPTLGP------LSDTAPPRDSWMFWAMLPPP--PPPLTSSLP 55
P S P+ P L P+L P L T PP +PPP PP L +S+P
Sbjct: 522 PYSQMPPPLPTMPPPVLPPSLPPPVMPPALPATVPPPG-------MPPPVMPPSLPTSVP 574
Query: 56 AAGSKPSSES---QPPMEAQSLPGAPPPFDAQILP------GAQPPFDAQSPLDSQPQPS 106
G PS S P + SL A PP +LP A PP PL S P
Sbjct: 575 PPGMPPSLSSAGPPPVLPPPSLSSAGPP---PVLPPPSLSSTAPPPVMPLPPLSSATPPP 631
Query: 107 GQP 109
G P
Sbjct: 632 GIP 634
Score = 42.0 bits (97), Expect = 0.001
Identities = 63/245 (25%), Positives = 90/245 (36%), Gaps = 69/245 (28%)
Query: 45 PPPPPLTSSLPAAGSKPSSESQP------------------PMEAQSLPGAPP------- 79
PPPPP+ P G S + Q PME +S P +PP
Sbjct: 102 PPPPPMP---PPPGPALSYQKQQQYKHQMLHHQRDGPPGLVPMELESPPESPPVPPGSYM 158
Query: 80 PFDAQILPGAQPPFDAQSPLDSQPQ-PSGQP--------WNFHASTSWY--WRQSSDRFP 128
P +P QPP P SQP P QP ++ A T Y SS +
Sbjct: 159 PPSQSYMPPPQPPPSYYPPTSSQPYLPPAQPSPSQSPPSQSYLAPTPSYSSSSSSSQSYL 218
Query: 129 RHQKSFNPAVKNS-YYPRKYDAKFTDFSLPPSRK---QKKKKRKEPVFHFFCDTCDRGFK 184
H +S+ P+ + S P + +K + PP K ++EP+ + G K
Sbjct: 219 SHSQSYLPSSQASPSRPSQGHSKSQLLAPPPPSAPPGNKTTVQQEPL--------ESGAK 270
Query: 185 NQEKYDKHMSEHTKCPELDCSFTAHEKIVQFHWR----------NMHAPGMKK---IKLD 231
N K + PE D S ++ Q+ +R +H PG KK + D
Sbjct: 271 N-----KSTEQQQAAPEPDPSTMTPQEQQQYWYRQHLLSLQQRTKVHLPGHKKGPVVAKD 325
Query: 232 TPEEI 236
TPE +
Sbjct: 326 TPEPV 330
Score = 33.5 bits (75), Expect = 0.46
Identities = 27/90 (30%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 20 LTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPP 79
+ P P S PP + PPP L SLP P+ + P PG PP
Sbjct: 516 MPPPFVPYSQMPPPLPTM--------PPPVLPPSLPPPVMPPALPATVPP-----PGMPP 562
Query: 80 PFDAQILPGAQPPFDAQSPLDSQPQPSGQP 109
P LP + PP L S P P
Sbjct: 563 PVMPPSLPTSVPPPGMPPSLSSAGPPPVLP 592
Score = 32.7 bits (73), Expect = 0.78
Identities = 31/93 (33%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 22 PTLGP--LSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPP 79
P L P LS PP +LPPP T+ P P S + PP PG PP
Sbjct: 589 PVLPPPSLSSAGPP-------PVLPPPSLSSTAPPPVMPLPPLSSATPP------PGIPP 635
Query: 80 PFDAQILP---GAQPPFDAQSPLDSQPQPSGQP 109
P Q +P A P A S SQ +P
Sbjct: 636 PGVPQGIPPQLTAAPVPPASSSQSSQVPEKPRP 668
Score = 31.2 bits (69), Expect = 2.3
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 22/90 (24%)
Query: 22 PTLGP--LSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPP 79
P L P LS TAPP P PPL+S+ P G P Q G PP
Sbjct: 603 PVLPPPSLSSTAPPPVM---------PLPPLSSATPPPGIPPPGVPQ---------GIPP 644
Query: 80 PFDAQILPGAQPPFDAQSPLDSQPQPSGQP 109
A +P A +Q P +P+P+ P
Sbjct: 645 QLTAAPVPPASSSQSSQVP--EKPRPALLP 672
Score = 29.3 bits (64), Expect = 8.6
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 19/101 (18%)
Query: 46 PPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPG----------AQPPFDA 95
PPPP+ SS+P G P PPM PPP + G Q P+
Sbjct: 1609 PPPPVHSSIPPPGPVPM--GMPPM------SKPPPVQQTVDYGHGRDISTNKVEQIPYGE 1660
Query: 96 QSPLDSQPQPSGQPWNF-HASTSWYWRQSSDRFPRHQKSFN 135
+ L P P + HA + + DR P + N
Sbjct: 1661 RITLRPDPLPERSTFETEHAGQRDRYDRERDREPYFDRQSN 1701
>gi|51702248 G protein-coupled receptor associated sorting protein 2
[Homo sapiens]
Length = 838
Score = 41.6 bits (96), Expect = 0.002
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 45 PPPPPLTSSLPAAGSKPSSESQ------PPMEAQSLPGAPPPFDAQILPGAQPPFDAQSP 98
P P T + +G++P +E Q P EAQ + GA P DA+ + GA+ DA++
Sbjct: 58 PAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDARAVGGARSKTDAKAI 117
Query: 99 LDSQPQPSGQPW 110
++P+ Q W
Sbjct: 118 PGARPKDEAQAW 129
Score = 37.4 bits (85), Expect = 0.032
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 51 TSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQ 104
T + P +K ++P EAQ++ GA P + Q++ GA+P +AQ ++P+
Sbjct: 46 TGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPK 99
Score = 33.9 bits (76), Expect = 0.35
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 49 PLTSSLPAAGSKPSSESQ------PPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQ 102
P T G++P +E+Q P +A+++ GA DA+ +PGA+P +AQ+ S+
Sbjct: 74 PKTEVQVMGGARPKTEAQGITGARPKTDARAVGGARSKTDAKAIPGARPKDEAQAWAQSE 133
Score = 33.1 bits (74), Expect = 0.60
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 55 PAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQ 108
P ++ ++ ++P E +S+P A P +AQ + GA+P + Q ++P+ Q
Sbjct: 38 PKVRTQATTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQ 91
>gi|19923967 G protein-coupled receptor associated sorting protein 2
[Homo sapiens]
Length = 838
Score = 41.6 bits (96), Expect = 0.002
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 45 PPPPPLTSSLPAAGSKPSSESQ------PPMEAQSLPGAPPPFDAQILPGAQPPFDAQSP 98
P P T + +G++P +E Q P EAQ + GA P DA+ + GA+ DA++
Sbjct: 58 PAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPKTDARAVGGARSKTDAKAI 117
Query: 99 LDSQPQPSGQPW 110
++P+ Q W
Sbjct: 118 PGARPKDEAQAW 129
Score = 37.4 bits (85), Expect = 0.032
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 51 TSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQ 104
T + P +K ++P EAQ++ GA P + Q++ GA+P +AQ ++P+
Sbjct: 46 TGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQGITGARPK 99
Score = 33.9 bits (76), Expect = 0.35
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 49 PLTSSLPAAGSKPSSESQ------PPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQ 102
P T G++P +E+Q P +A+++ GA DA+ +PGA+P +AQ+ S+
Sbjct: 74 PKTEVQVMGGARPKTEAQGITGARPKTDARAVGGARSKTDAKAIPGARPKDEAQAWAQSE 133
Score = 33.1 bits (74), Expect = 0.60
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 55 PAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQ 108
P ++ ++ ++P E +S+P A P +AQ + GA+P + Q ++P+ Q
Sbjct: 38 PKVRTQATTGARPKTETKSVPAARPKTEAQAMSGARPKTEVQVMGGARPKTEAQ 91
>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 41.6 bits (96), Expect = 0.002
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 44 PPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQP 103
PPPPPPL S+L + + S S PP P PPP A P PP +PL P
Sbjct: 325 PPPPPPLPSALSTSSLRASMTSTPPPPVP--PPPPPPATALQAPAVPPP---PAPLQIAP 379
Score = 35.0 bits (79), Expect = 0.16
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 43 LPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPG----APPPFDAQILPGAQPPFDAQSP 98
+PPPPPP ++L A P PP Q PG APPP A L PP +P
Sbjct: 352 VPPPPPPPATALQAPAVPP-----PPAPLQIAPGVLHPAPPPI-APPLVQPSPPVARAAP 405
Query: 99 ----LDSQPQPSGQ 108
+ P P G+
Sbjct: 406 VCETVPVHPLPQGE 419
Score = 33.5 bits (75), Expect = 0.46
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 43 LPPPPPPLTSSLPAAGSKPSSE------SQPPMEAQSLPGA---------PPPFDAQILP 87
LPPPPPP LP G +PSS + PP P PP +Q++P
Sbjct: 423 LPPPPPP--PPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP 480
Query: 88 GAQP 91
++P
Sbjct: 481 ASEP 484
Score = 31.6 bits (70), Expect = 1.7
Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 18/124 (14%)
Query: 2 AEPTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSL-----PA 56
A TS P+ P T P + PP + +L P PPP+ L P
Sbjct: 342 ASMTSTPPPPVPPPPPPPATALQAP-AVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPV 400
Query: 57 AGSKPSSESQP--PM---EAQSLPGAPPPFDAQILPGAQPPFD------AQSPLDSQPQP 105
A + P E+ P P+ E Q LP PPP PG +P A P P P
Sbjct: 401 ARAAPVCETVPVHPLPQGEVQGLPPPPPP-PPLPPPGIRPSSPVTVTALAHPPSGLHPTP 459
Query: 106 SGQP 109
S P
Sbjct: 460 STAP 463
>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 41.6 bits (96), Expect = 0.002
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 44 PPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQP 103
PPPPPPL S+L + + S S PP P PPP A P PP +PL P
Sbjct: 325 PPPPPPLPSALSTSSLRASMTSTPPPPVP--PPPPPPATALQAPAVPPP---PAPLQIAP 379
Score = 35.0 bits (79), Expect = 0.16
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 43 LPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPG----APPPFDAQILPGAQPPFDAQSP 98
+PPPPPP ++L A P PP Q PG APPP A L PP +P
Sbjct: 352 VPPPPPPPATALQAPAVPP-----PPAPLQIAPGVLHPAPPPI-APPLVQPSPPVARAAP 405
Query: 99 ----LDSQPQPSGQ 108
+ P P G+
Sbjct: 406 VCETVPVHPLPQGE 419
Score = 33.5 bits (75), Expect = 0.46
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 43 LPPPPPPLTSSLPAAGSKPSSE------SQPPMEAQSLPGA---------PPPFDAQILP 87
LPPPPPP LP G +PSS + PP P PP +Q++P
Sbjct: 423 LPPPPPP--PPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP 480
Query: 88 GAQP 91
++P
Sbjct: 481 ASEP 484
Score = 31.6 bits (70), Expect = 1.7
Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 18/124 (14%)
Query: 2 AEPTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSL-----PA 56
A TS P+ P T P + PP + +L P PPP+ L P
Sbjct: 342 ASMTSTPPPPVPPPPPPPATALQAP-AVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPV 400
Query: 57 AGSKPSSESQP--PM---EAQSLPGAPPPFDAQILPGAQPPFD------AQSPLDSQPQP 105
A + P E+ P P+ E Q LP PPP PG +P A P P P
Sbjct: 401 ARAAPVCETVPVHPLPQGEVQGLPPPPPP-PPLPPPGIRPSSPVTVTALAHPPSGLHPTP 459
Query: 106 SGQP 109
S P
Sbjct: 460 STAP 463
>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 41.6 bits (96), Expect = 0.002
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 44 PPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQP 103
PPPPPPL S+L + + S S PP P PPP A P PP +PL P
Sbjct: 325 PPPPPPLPSALSTSSLRASMTSTPPPPVP--PPPPPPATALQAPAVPPP---PAPLQIAP 379
Score = 35.0 bits (79), Expect = 0.16
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 43 LPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPG----APPPFDAQILPGAQPPFDAQSP 98
+PPPPPP ++L A P PP Q PG APPP A L PP +P
Sbjct: 352 VPPPPPPPATALQAPAVPP-----PPAPLQIAPGVLHPAPPPI-APPLVQPSPPVARAAP 405
Query: 99 ----LDSQPQPSGQ 108
+ P P G+
Sbjct: 406 VCETVPVHPLPQGE 419
Score = 33.5 bits (75), Expect = 0.46
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 43 LPPPPPPLTSSLPAAGSKPSSE------SQPPMEAQSLPGA---------PPPFDAQILP 87
LPPPPPP LP G +PSS + PP P PP +Q++P
Sbjct: 423 LPPPPPP--PPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP 480
Query: 88 GAQP 91
++P
Sbjct: 481 ASEP 484
Score = 31.6 bits (70), Expect = 1.7
Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 18/124 (14%)
Query: 2 AEPTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSL-----PA 56
A TS P+ P T P + PP + +L P PPP+ L P
Sbjct: 342 ASMTSTPPPPVPPPPPPPATALQAP-AVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPV 400
Query: 57 AGSKPSSESQP--PM---EAQSLPGAPPPFDAQILPGAQPPFD------AQSPLDSQPQP 105
A + P E+ P P+ E Q LP PPP PG +P A P P P
Sbjct: 401 ARAAPVCETVPVHPLPQGEVQGLPPPPPP-PPLPPPGIRPSSPVTVTALAHPPSGLHPTP 459
Query: 106 SGQP 109
S P
Sbjct: 460 STAP 463
>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 41.6 bits (96), Expect = 0.002
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 44 PPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQP 103
PPPPPPL S+L + + S S PP P PPP A P PP +PL P
Sbjct: 325 PPPPPPLPSALSTSSLRASMTSTPPPPVP--PPPPPPATALQAPAVPPP---PAPLQIAP 379
Score = 35.0 bits (79), Expect = 0.16
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 43 LPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPG----APPPFDAQILPGAQPPFDAQSP 98
+PPPPPP ++L A P PP Q PG APPP A L PP +P
Sbjct: 352 VPPPPPPPATALQAPAVPP-----PPAPLQIAPGVLHPAPPPI-APPLVQPSPPVARAAP 405
Query: 99 ----LDSQPQPSGQ 108
+ P P G+
Sbjct: 406 VCETVPVHPLPQGE 419
Score = 33.5 bits (75), Expect = 0.46
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 17/64 (26%)
Query: 43 LPPPPPPLTSSLPAAGSKPSSE------SQPPMEAQSLPGA---------PPPFDAQILP 87
LPPPPPP LP G +PSS + PP P PP +Q++P
Sbjct: 423 LPPPPPP--PPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIP 480
Query: 88 GAQP 91
++P
Sbjct: 481 ASEP 484
Score = 31.6 bits (70), Expect = 1.7
Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 18/124 (14%)
Query: 2 AEPTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSL-----PA 56
A TS P+ P T P + PP + +L P PPP+ L P
Sbjct: 342 ASMTSTPPPPVPPPPPPPATALQAP-AVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPV 400
Query: 57 AGSKPSSESQP--PM---EAQSLPGAPPPFDAQILPGAQPPFD------AQSPLDSQPQP 105
A + P E+ P P+ E Q LP PPP PG +P A P P P
Sbjct: 401 ARAAPVCETVPVHPLPQGEVQGLPPPPPP-PPLPPPGIRPSSPVTVTALAHPPSGLHPTP 459
Query: 106 SGQP 109
S P
Sbjct: 460 STAP 463
>gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming
sequence-like 1 [Homo sapiens]
Length = 491
Score = 41.6 bits (96), Expect = 0.002
Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 3 EPTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLP----AAG 58
EP P H + P + PP+ + A PPPPPP++ +P AAG
Sbjct: 307 EPPPPAPAPAHHHPEYQGQPVVSHPHHIMPPQQHY---APPPPPPPPISHPMPHPPQAAG 363
Query: 59 SKPSSESQ---PPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQP 109
+ SQ PPM + P PPP I+ P + P PQ G P
Sbjct: 364 TPHLVYSQAPPPPMTSAPPPITPPP--GHIIAQMPPYMNHPPPGPPPPQHGGPP 415
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 41.2 bits (95), Expect = 0.002
Identities = 28/84 (33%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 31 APPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPP-----MEAQSLPGAPPPFDAQI 85
APP PPPPPP S+ P+ PP A S P PPP +
Sbjct: 309 APPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGV 368
Query: 86 LPGAQPPFDAQSPLDSQPQPSGQP 109
P A PP P P P G P
Sbjct: 369 GPVAPPPPPPPPPPPGPPPPPGLP 392
Score = 40.0 bits (92), Expect = 0.005
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 44 PPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQP 103
PPPPPP P P + PP A+ GAPPP ++ A PP P + P
Sbjct: 277 PPPPPPSRGGPPPPPPPPHNSGPPPPPARG-RGAPPPPPSRAPTAAPPPPPPSRPSVAVP 335
Query: 104 QP 105
P
Sbjct: 336 PP 337
Score = 34.7 bits (78), Expect = 0.20
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 25 GPLSDTAPPRDSWMFWAMLPPPPPPLT---SSLPAAGSKPSSESQPPMEAQSLPGAPPPF 81
GP PP +S PPPPP + P P++ PP ++ PPP
Sbjct: 286 GPPPPPPPPHNSG-------PPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPP 338
Query: 82 DAQILPGAQPPFDAQSPLDSQPQP 105
++ P P + +P P P
Sbjct: 339 PNRMYPPPPPALPSSAPSGPPPPP 362
Score = 31.2 bits (69), Expect = 2.3
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 12/55 (21%)
Query: 44 PPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSP 98
PPPPPP + P PP PG PPP PG D Q P
Sbjct: 358 PPPPPPSVLGVGPVAPPPPPPPPPP------PGPPPP------PGLPSDGDHQVP 400
Score = 30.8 bits (68), Expect = 3.0
Identities = 18/66 (27%), Positives = 23/66 (34%)
Query: 44 PPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQP 103
PPPPP + P + PP A + PPP + PP + P
Sbjct: 290 PPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPA 349
Query: 104 QPSGQP 109
PS P
Sbjct: 350 LPSSAP 355
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 41.2 bits (95), Expect = 0.002
Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 44 PPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQ-ILPGAQPPFDAQSPLD-- 100
P PP P TSS + S S S P S P PPP+ A+ I P +PP AQ+P D
Sbjct: 544 PTPPTPTTSS---SNSNSGSHSSSPAGPVSFP--PPPYLARSIDPLPRPPSPAQNPQDPP 598
Query: 101 ----SQPQPSGQPWNFHASTSWYWRQSSDRFPR 129
+ P P + H +TS +R+ PR
Sbjct: 599 LVPLTLALPPAPPSSCHQNTSGSFRRPESPRPR 631
Score = 33.5 bits (75), Expect = 0.46
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 40 WAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLP----GAPPPFDAQILPGAQPPFDA 95
W+ PP PPP ++ LP G +S QPP+ A P + P PGA P
Sbjct: 28 WSSCPPHPPPRSAWLP-GGRCSASIGQPPLPAPLPPSHGSSSGHPSKPYYAPGAPTPRPL 86
Query: 96 QSPLDS 101
L+S
Sbjct: 87 HGKLES 92
Score = 31.6 bits (70), Expect = 1.7
Identities = 46/200 (23%), Positives = 67/200 (33%), Gaps = 48/200 (24%)
Query: 1 MAEPTSDFETPIGWHASPELT-PTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGS 59
+ EP + ++P +P T P + + T + PPP L P A
Sbjct: 725 LKEPFASLQSPFPTDTAPTTTAPAVAVTTTTTTTTTTTATQEEEKKPPPALPPPPPLAKF 784
Query: 60 KPSSESQPP-----------------MEAQ------------SLPGAPPPFDAQILPG-- 88
P S+ QPP +E Q + PG P Q PG
Sbjct: 785 PPPSQPQPPPPPPPSPASLLKSLASVLEGQKYCYRGTGAAVSTRPGPLP--TTQYSPGPP 842
Query: 89 ----AQPPFDAQSPLDSQPQPSGQPWNFHASTSWYWRQSSDRFPRHQKSFNPAVKNSYYP 144
A PP A PQPS AS+S + S + R +++ V P
Sbjct: 843 SGATALPPTSAAPSAQGSPQPS-------ASSSSQFSTSGGPWARERRAGEEPVPGPMTP 895
Query: 145 RKYDAKFTDFSLPPSRKQKK 164
+ SLPP+R + +
Sbjct: 896 TQPP---PPLSLPPARSESE 912
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo
sapiens]
Length = 1758
Score = 40.8 bits (94), Expect = 0.003
Identities = 39/146 (26%), Positives = 48/146 (32%), Gaps = 14/146 (9%)
Query: 13 GWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQ 72
G H S T GP P +P PPPPL P P P Q
Sbjct: 535 GRHHSERSQRTQGPSLPATP--------VFVPVPPPPLYPPPPHTLPLPPGVPPPQFSPQ 586
Query: 73 SLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWNFHASTSWYWRQ---SSDRFPR 129
PG PPP + P PP A S P S H++T + S + F R
Sbjct: 587 FPPGQPPPAGYSVPPPGFPPAPANL---STPWVSSGVQTAHSNTIPTTQAPPLSREEFYR 643
Query: 130 HQKSFNPAVKNSYYPRKYDAKFTDFS 155
Q+ K+ Y Y +S
Sbjct: 644 EQRRLKEESKSPYSGSSYSRSSYTYS 669
Score = 32.7 bits (73), Expect = 0.78
Identities = 54/239 (22%), Positives = 86/239 (35%), Gaps = 27/239 (11%)
Query: 223 PGMKKIKLDTPEEIARWREERRKNYPTLANIERKKKLKLEKEKRGAVLTTTQYGKMKGMS 282
P KI L P + + E K + NI K+ EK + + + K+KG
Sbjct: 1161 PEKDKISLSAPAKKIKLNRETGKKIGSTENISNTKE---PSEKLESTSSKVKQEKVKGKV 1217
Query: 283 RHSQMAKIRSPGKNHKWKNDNSRQRAVTGSGSHLCDLK---LEGPPEANAD--------- 330
R S + + +S + D K ++ E N D
Sbjct: 1218 RRKVTGTEGSSSTLVDYTSTSSTGGSPVRKSEEKTDTKRTVIKTMEEYNNDNTAPAEDVI 1277
Query: 331 -----PLGVLINSDSESDKEE----KPQHSV-IPKEVTPALCSLMSSYGSLSGSESEPEE 380
P D ES++E+ +P SV P V + + S+ ESEP E
Sbjct: 1278 IMIQVPQSKWDKDDFESEEEDVKSTQPISSVGKPASVIKNVSTKPSNIVKYPEKESEPSE 1337
Query: 381 TPIKTEADVLAE--NQVLDSSAPKSPSQDVKATVRNFSEAKSENRKKSFEKTNPKRKKD 437
K DV E + SS + S+ K R++S + EN +K T P+++ +
Sbjct: 1338 KIQKFTKDVSHEIIQHEVKSSKNSASSEKGKTKDRDYSVLEKENPEKRKNSTQPEKESN 1396
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 40.8 bits (94), Expect = 0.003
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 22 PTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPF 81
P L P PP+ + LPPPPPP + PA P PP+ A PG PPP
Sbjct: 688 PPLPPPPPPPPPQPGFPMPPPLPPPPPPPPPAHPAVTVPP-----PPLPAP--PGVPPP- 739
Query: 82 DAQILPGAQPPF 93
ILP PPF
Sbjct: 740 --PILP-PLPPF 748
Score = 38.1 bits (87), Expect = 0.019
Identities = 35/121 (28%), Positives = 45/121 (37%), Gaps = 12/121 (9%)
Query: 22 PTLGPLSDTAPPRDSWMFWAMLPPPPPPLT-SSLPAAGSKPSSESQPPME---AQSLPGA 77
P PL PPR PPP P T +S P+ +P +E PP SL +
Sbjct: 1277 PLQPPLPPPRPPRPP------SPPPEPETTDASHPSVPPEPLAEDHPPHTPGLCGSLAKS 1330
Query: 78 PPPFDAQILPGAQPPFDAQSP--LDSQPQPSGQPWNFHASTSWYWRQSSDRFPRHQKSFN 135
PG +PP S S PQ G P+++ A + R P SF
Sbjct: 1331 QSTETVPATPGGEPPLSGGSSGLSLSSPQVPGSPFSYPAPSPSLSSGGLPRTPGRDFSFT 1390
Query: 136 P 136
P
Sbjct: 1391 P 1391
Score = 37.4 bits (85), Expect = 0.032
Identities = 31/102 (30%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 6 SDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSES 65
S ++TP+ P PT + RDS F P PPPL + P A KP +
Sbjct: 398 SPYQTPVAHFPPPPEEPTA---TAAFGARDSGEF--RRAPAPPPLPPAEPLAKEKPGTP- 451
Query: 66 QPPMEAQSLPGAPPPFDAQILPGAQPPFD-AQSPLDSQPQPS 106
PG PPP + G +P F + P DS P+
Sbjct: 452 ---------PGPPPPDTNSMELGGRPTFGWSPEPCDSPGTPT 484
Score = 32.0 bits (71), Expect = 1.3
Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 24 LGPLSDTAPPRDSWMFWAMLPPPPPPLTS-SLPAAGSKPSSESQPPMEAQSLPGAPPPFD 82
L P PP F + PPPPPP P P PP ++ PPP
Sbjct: 675 LAPTLPLPPPPG---FPPLPPPPPPPPPQPGFPMPPPLPPPPPPPPPAHPAVTVPPPPLP 731
Query: 83 AQILPGAQPP 92
A PG PP
Sbjct: 732 AP--PGVPPP 739
Score = 31.6 bits (70), Expect = 1.7
Identities = 23/67 (34%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 43 LPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQ 102
LP PPPP LP P + PM P PPP P A P P
Sbjct: 679 LPLPPPPGFPPLPPPPPPPPPQPGFPMPPPLPPPPPPP------PPAHPAVTVPPP--PL 730
Query: 103 PQPSGQP 109
P P G P
Sbjct: 731 PAPPGVP 737
Score = 29.6 bits (65), Expect = 6.6
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 41 AMLPPPPPPLTSSLPAAGSKPSSESQPPME-AQSLPGAPPPFDAQILPGAQPPFDAQSPL 99
+ML PP P+ PA +P E E A L PP + + P P + L
Sbjct: 1205 SMLDEPPLPVGVEEPADSREPPEEPGLSQEGAMLLSPEPPAKEVEARPPLSPERAPEHDL 1264
Query: 100 DSQPQP 105
+ +P+P
Sbjct: 1265 EVEPEP 1270
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 40.8 bits (94), Expect = 0.003
Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 18 PELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGA 77
P TP P PP+ + P PPPL + P S P PP ++P
Sbjct: 1463 PAPTPQPQPPPPPPPPQPAL-------PSPPPLVAPTP---SSPPPPPLPPPPPPAMPSP 1512
Query: 78 PPPFDAQILPGAQPPFDAQSPLDSQPQ-PSGQP 109
PPP P A PP + +P P+ P +P
Sbjct: 1513 PPPPPPAAAPLAAPPEEPAAPSPEDPELPDTRP 1545
Score = 35.4 bits (80), Expect = 0.12
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 23/88 (26%)
Query: 16 ASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLP 75
A P P + P + PP LPPPPPP S P PP + P
Sbjct: 1481 ALPSPPPLVAPTPSSPPPPP-------LPPPPPPAMPSPP-----------PPPPPAAAP 1522
Query: 76 GAPPPFDAQILPGAQPPFDAQSPLDSQP 103
A PP + P A P D + P D++P
Sbjct: 1523 LAAPPEE----PAAPSPEDPELP-DTRP 1545
Score = 34.3 bits (77), Expect = 0.27
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 44 PPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQP 103
PPP PP PA +P PP +LP +PPP A PP P + P
Sbjct: 1457 PPPTPP-----PAPTPQPQPPPPPPPPQPALP-SPPPLVAPTPSSPPPPPLPPPPPPAMP 1510
Query: 104 QPSGQP 109
P P
Sbjct: 1511 SPPPPP 1516
Score = 33.1 bits (74), Expect = 0.60
Identities = 31/98 (31%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 22 PTLGPLSDTAPPRDSWMFWAMLPPPPPP---L-------TSSLPAAGSKPSSESQPPMEA 71
P GP DT+ P + A P PPP L T P KP P
Sbjct: 1409 PLAGP-KDTSTPDGPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTP 1467
Query: 72 QSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQP 109
Q P PPP LP + PP A +P P P P
Sbjct: 1468 QPQPPPPPPPPQPALP-SPPPLVAPTPSSPPPPPLPPP 1504
Score = 32.3 bits (72), Expect = 1.0
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 21/83 (25%)
Query: 44 PPPPPPLTSSL----------PAAGS---KPSSESQPPMEAQSLPGA-----PPPFDAQI 85
PPPPPP+ L PAA S +P PP Q L GA P P D +
Sbjct: 840 PPPPPPMPLQLEAHLRSHGLEPAAPSPRLRPEESLDPPGAMQELLGALEPLPPAPGDTGV 899
Query: 86 LPGAQPPFDAQSPLDSQPQPSGQ 108
P P + + P + PS Q
Sbjct: 900 GP---PNSEGKDPAGAYRSPSPQ 919
Score = 30.8 bits (68), Expect = 3.0
Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 45 PPPPP---------LTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPF-D 94
PPPPP L SS AA + S Q + + PG PPP + LP
Sbjct: 234 PPPPPRHLPTQFNLLASSSAAAAAAEQSSPQLYNFSGAAPGPPPP--ERALPRQDTVIKH 291
Query: 95 AQSPLDSQPQPSGQP 109
Q P +QP P P
Sbjct: 292 YQRPASAQPPPPPPP 306
Score = 29.3 bits (64), Expect = 8.6
Identities = 22/76 (28%), Positives = 26/76 (34%), Gaps = 10/76 (13%)
Query: 44 PPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGAQPPFDAQSPL---- 99
PPPPPP S E+ P LP PP +L A P + S +
Sbjct: 764 PPPPPPTAQSTQPTPHGLLLEAGGPDLPLVLPPPPPQLLPSVLSHAPSPSPSASKVGVHL 823
Query: 100 ------DSQPQPSGQP 109
D PQP P
Sbjct: 824 LEPATRDGAPQPPPPP 839
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 40.4 bits (93), Expect = 0.004
Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 16/162 (9%)
Query: 16 ASPELTPTLGPLSDTAPPRDSWMF---WAMLPPPPPPLTS-SLPAAGSKPS---SESQPP 68
++PE P G ++A S + LPP PP +S SL ++GS + SE P
Sbjct: 1082 SNPESLPAQGQAQNSAQSPASLVLVDAGQQLPPRPPQSSSVSLVSSGSGQAAVPSEQPWP 1141
Query: 69 MEAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWNFHASTSWYWRQSSDRFP 128
+L PPP D +P +DA P S P P +P + S Y++ +
Sbjct: 1142 QPVPALAPGPPPQDLAAYYYYRPLYDAYQPQYSLPYPP-EP----GAASLYYQDVYSLYE 1196
Query: 129 RHQKSFNPAVKNSYYPRKYDAKFTDFSLPPSRKQKKKKRKEP 170
+ ++ A S Y + Y ++ + P SR +R P
Sbjct: 1197 PRYRPYDGAA--SAYAQNY--RYPEPERPSSRASHSSERPPP 1234
Score = 32.0 bits (71), Expect = 1.3
Identities = 31/100 (31%), Positives = 38/100 (38%), Gaps = 18/100 (18%)
Query: 22 PTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAP--- 78
P GPL T P + F L P PP +A PSSE E Q+LP P
Sbjct: 109 PLPGPL--TQPRAHASPFSGALTPSAPPGPEMNRSAEVGPSSEP----EVQTLPYLPHYI 162
Query: 79 PPFDAQI---------LPGAQPPFDAQSPLDSQPQPSGQP 109
P D + +PG P Q+P D P+ P
Sbjct: 163 PGVDPETSHGGHPHGNMPGLDRPLSRQNPHDGVVTPAASP 202
>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 490
Score = 40.0 bits (92), Expect = 0.005
Identities = 36/110 (32%), Positives = 46/110 (41%), Gaps = 12/110 (10%)
Query: 6 SDFETPIGWHASPELTPTL-----GPLSDTAPPRDSWMFWAMLPPPP---PPLTSSLPAA 57
SD + G + P P+L P SD +PP D + +P P P L S +P+
Sbjct: 236 SDVPSLSGVPSPPSDVPSLLSGVPSPPSDISPPSDVPSLLSDVPSLPSDVPSLLSGVPSP 295
Query: 58 GSK-PSSESQPPMEAQSLPGAPPPFDAQILPGA-QPPFDAQSPLDSQPQP 105
S PS S P +P PP D +L G PP D SP P P
Sbjct: 296 PSDVPSLLSDVPSPPSDVPS--PPSDIPLLSGVPSPPSDVPSPPSDVPSP 343
Score = 39.3 bits (90), Expect = 0.008
Identities = 33/94 (35%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 18 PELTPTLGPLSDTAP-PRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPG 76
P P+L LSD P D + +P PP + S L S PS PP + L G
Sbjct: 268 PSDVPSL--LSDVPSLPSDVPSLLSGVPSPPSDVPSLLSDVPSPPSDVPSPPSDIPLLSG 325
Query: 77 AP-PPFDAQILPGAQPPFDAQSPLDSQPQPSGQP 109
P PP D PP D SP P SG P
Sbjct: 326 VPSPPSDV-----PSPPSDVPSPPSDVPLLSGVP 354
Score = 35.4 bits (80), Expect = 0.12
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 43 LPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPGAPPPFDAQILPGA-QPPFDAQSPLDS 101
+P PP + S L S PS S PP + SL P +L G PP D SP
Sbjct: 114 VPSPPSDVPSLLSGVPSLPSDVSSPPSDVPSLLSDVP----SLLSGVPSPPSDVPSPPSD 169
Query: 102 QPQP 105
P P
Sbjct: 170 VPSP 173
Score = 35.0 bits (79), Expect = 0.16
Identities = 30/94 (31%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 26 PLSDT-APPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQSLPG-------- 76
P SD +PP D +P PP + S L S PS PP + S P
Sbjct: 159 PPSDVPSPPSD-------VPSPPSDVPSLLSGVPSPPSDVPSPPSDVPSPPSDVPLLSDV 211
Query: 77 APPPFDAQILPGA-QPPFDAQSPLDSQPQPSGQP 109
PP D +L PP D S P SG P
Sbjct: 212 PSPPSDVPLLSDVPSPPSDVPSLPSDVPSLSGVP 245
Score = 34.3 bits (77), Expect = 0.27
Identities = 36/125 (28%), Positives = 43/125 (34%), Gaps = 25/125 (20%)
Query: 4 PTSDFETPIGWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPP---PPLTSSLPAAGSK 60
P SD +P SP L LSD P + +P PP P L S +P+
Sbjct: 187 PPSDVPSPPSDVPSPPSDVPL--LSDVPSPPSDVPLLSDVPSPPSDVPSLPSDVPSLSGV 244
Query: 61 PSSESQPPMEAQSLPGAP----PPFDA---------------QILPGA-QPPFDAQSPLD 100
PS S P +P P PP D +L G PP D S L
Sbjct: 245 PSPPSDVPSLLSGVPSPPSDISPPSDVPSLLSDVPSLPSDVPSLLSGVPSPPSDVPSLLS 304
Query: 101 SQPQP 105
P P
Sbjct: 305 DVPSP 309
Score = 33.9 bits (76), Expect = 0.35
Identities = 32/96 (33%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 13 GWHASPELTPTLGPLSDT-APPRDSWMFWAMLPPPPP--PLTSSLPAAGSKPSSESQPPM 69
G + P P+L LSD +PP D +P PP PL S +P S PS PP
Sbjct: 291 GVPSPPSDVPSL--LSDVPSPPSD-------VPSPPSDIPLLSGVP---SPPSDVPSPPS 338
Query: 70 EAQSLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQP 105
+ S PP D +L G P L P P
Sbjct: 339 DVPS-----PPSDVPLLSGVPSPLSDVPLLSGVPSP 369
>gi|156415990 Y box binding protein 2 [Homo sapiens]
Length = 364
Score = 40.0 bits (92), Expect = 0.005
Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 15/149 (10%)
Query: 31 APPRDSWMFWAMLPPP--PPPLTSSLPAAGSKPSSESQPPMEAQSLP--GAPPPF--DAQ 84
AP R + PP PPP+ + +P+AG+ P S+ + ++ P PPPF +
Sbjct: 174 APNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRR 233
Query: 85 ILPGAQPPFDAQSPLDSQPQPSGQPWNFHASTSWYWRQSSDRFPRHQKSFNPAVKNSYYP 144
+ G +PP + Q P++ + + A + +Q +R P F P + + P
Sbjct: 234 FVRGPRPP-NQQQPIEGTDRVEPKE---TAPLEGHQQQGDERVP--PPRFRPRYRRPFRP 287
Query: 145 RKYDAKFT---DFSLPPSRKQKKKKRKEP 170
R T D PS+ R EP
Sbjct: 288 RPRQQPTTEGGDGETKPSQGPADGSRPEP 316
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo
sapiens]
Length = 1792
Score = 40.0 bits (92), Expect = 0.005
Identities = 40/158 (25%), Positives = 54/158 (34%), Gaps = 14/158 (8%)
Query: 13 GWHASPELTPTLGPLSDTAPPRDSWMFWAMLPPPPPPLTSSLPAAGSKPSSESQPPMEAQ 72
G H S T GP P +P PPPPL P P P Q
Sbjct: 535 GRHHSERSQRTQGPSLPATP--------VFVPVPPPPLYPPPPHTLPLPPGVPPPQFSPQ 586
Query: 73 SLPGAPPPFDAQILPGAQPPFDAQSPLDSQPQPSGQPWNFHASTSWYWRQ---SSDRFPR 129
PG PPP + P PP A S P S H++T + S + F R
Sbjct: 587 FPPGQPPPAGYSVPPPGFPPAPANL---STPWVSSGVQTAHSNTIPTTQAPPLSREEFYR 643
Query: 130 HQKSFNPAVKNSYYPRKYDAKFTDFSLPPSRKQKKKKR 167
Q+ K ++ F + + QK+++R
Sbjct: 644 EQRRLKEEEKKKSKLDEFTNDFAKELMEYKKIQKERRR 681
Score = 32.7 bits (73), Expect = 0.78
Identities = 54/239 (22%), Positives = 86/239 (35%), Gaps = 27/239 (11%)
Query: 223 PGMKKIKLDTPEEIARWREERRKNYPTLANIERKKKLKLEKEKRGAVLTTTQYGKMKGMS 282
P KI L P + + E K + NI K+ EK + + + K+KG
Sbjct: 1195 PEKDKISLSAPAKKIKLNRETGKKIGSTENISNTKE---PSEKLESTSSKVKQEKVKGKV 1251
Query: 283 RHSQMAKIRSPGKNHKWKNDNSRQRAVTGSGSHLCDLK---LEGPPEANAD--------- 330
R S + + +S + D K ++ E N D
Sbjct: 1252 RRKVTGTEGSSSTLVDYTSTSSTGGSPVRKSEEKTDTKRTVIKTMEEYNNDNTAPAEDVI 1311
Query: 331 -----PLGVLINSDSESDKEE----KPQHSV-IPKEVTPALCSLMSSYGSLSGSESEPEE 380
P D ES++E+ +P SV P V + + S+ ESEP E
Sbjct: 1312 IMIQVPQSKWDKDDFESEEEDVKSTQPISSVGKPASVIKNVSTKPSNIVKYPEKESEPSE 1371
Query: 381 TPIKTEADVLAE--NQVLDSSAPKSPSQDVKATVRNFSEAKSENRKKSFEKTNPKRKKD 437
K DV E + SS + S+ K R++S + EN +K T P+++ +
Sbjct: 1372 KIQKFTKDVSHEIIQHEVKSSKNSASSEKGKTKDRDYSVLEKENPEKRKNSTQPEKESN 1430
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,894,989
Number of Sequences: 37866
Number of extensions: 1503168
Number of successful extensions: 17427
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 831
Number of HSP's that attempted gapping in prelim test: 11838
Number of HSP's gapped (non-prelim): 4727
length of query: 495
length of database: 18,247,518
effective HSP length: 106
effective length of query: 389
effective length of database: 14,233,722
effective search space: 5536917858
effective search space used: 5536917858
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.