Guide to the Human Genome
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Name: OSTF1 Sequence: fasta or formatted (214aa) NCBI GI: 166235148
Description:

osteoclast stimulating factor 1

Referenced in:

Bone and Related Tissues
Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         22           3
 C cysteine            1.4          3           1
 D aspartate           8.4         18           2
 E glutamate           6.1         13           2
 F phenylalanine       2.3          5           1
 G glycine             7.0         15           2
 H histidine           1.9          4           1
 I isoleucine          4.2          9           2
 K lysine              7.9         17           3
 L leucine            10.3         22           3
 M methionine          1.9          4           1
 N asparagine          5.6         12           1
 P proline             4.7         10           3
 Q glutamine           3.3          7           2
 R arginine            4.2          9           1
 S serine              4.7         10           1
 T threonine           6.1         13           1
 V valine              4.2          9           1
 W tryptophan          2.3          5           2
 Y tyrosine            3.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   osteoclast stimulating factor 1 
ANKRD27               0.110   ankyrin repeat domain 27 (VPS9 domain) 
ANKRD2                0.108   ankyrin repeat domain 2 isoform b 
ANKRD12               0.103   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.103   ankyrin repeat domain 12 isoform 1 
ACBD6                 0.098   acyl-coenzyme A binding domain containing 6 
DAPK1                 0.096   death-associated protein kinase 1 
ANKRD2                0.096   ankyrin repeat domain 2 isoform a 
GRB2                  0.094   growth factor receptor-bound protein 2 isoform 1 [Hom...
GRB2                  0.094   growth factor receptor-bound protein 2 isoform 2 [Ho...
ARHGEF7               0.089   PAK-interacting exchange factor beta isoform a [Hom...
ARHGEF7               0.089   PAK-interacting exchange factor beta isoform d [Hom...
ARHGEF7               0.089   PAK-interacting exchange factor beta isoform c [Hom...
ARHGEF7               0.089   PAK-interacting exchange factor beta isoform b [Homo...
ARHGEF7               0.089   PAK-interacting exchange factor beta isoform a 
ARHGEF6               0.089   Rac/Cdc42 guanine nucleotide exchange factor 6 [Homo...
TNKS                  0.089   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD23               0.089   diabetes related ankyrin repeat protein 
ANKRD44               0.086   ankyrin repeat domain 44 
ANKRD11               0.086   ankyrin repeat domain 11 
EHMT2                 0.084   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.084   euchromatic histone-lysine N-methyltransferase 2 is...
ANKRD17               0.084   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.084   ankyrin repeat domain protein 17 isoform b 
PPP1R12B              0.084   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R12B              0.084   protein phosphatase 1, regulatory (inhibitor) subunit...
TNKS2                 0.084   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANKRD29               0.084   ankyrin repeat domain 29 
BARD1                 0.082   BRCA1 associated RING domain 1 
SH3GL2                0.082   SH3-domain GRB2-like 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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