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Search of human proteins with 166197706
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|166197706 THUMP domain containing 3 [Homo sapiens]
(507 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|166197708 THUMP domain containing 3 [Homo sapiens] 1034 0.0
gi|166197706 THUMP domain containing 3 [Homo sapiens] 1034 0.0
gi|13376880 THUMP domain containing 2 [Homo sapiens] 133 3e-31
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 36 0.072
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 36 0.072
gi|169234949 CWF19-like 2, cell cycle control [Homo sapiens] 34 0.36
gi|57242807 zinc finger protein 518 [Homo sapiens] 33 0.47
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 33 0.80
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 33 0.80
gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens] 32 1.8
gi|57864582 hornerin [Homo sapiens] 32 1.8
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 31 2.3
gi|242332527 hypothetical protein LOC65250 [Homo sapiens] 31 3.0
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa... 30 4.0
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa... 30 4.0
gi|33946313 ninein isoform 4 [Homo sapiens] 30 4.0
gi|33946321 ninein isoform 5 [Homo sapiens] 30 4.0
gi|148536871 ninein isoform 1 [Homo sapiens] 30 4.0
gi|148536869 ninein isoform 2 [Homo sapiens] 30 4.0
gi|11415048 nucleosome assembly protein 1-like 2 [Homo sapiens] 30 4.0
gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear... 30 5.2
gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear... 30 5.2
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 30 5.2
gi|153791492 eukaryotic translation initiation factor 3, subunit... 30 6.8
gi|16751843 toll-like receptor 5 [Homo sapiens] 30 6.8
gi|6912650 semaphorin 3E [Homo sapiens] 30 6.8
gi|32967605 bromodomain adjacent to zinc finger domain, 1A isofo... 30 6.8
gi|32967603 bromodomain adjacent to zinc finger domain, 1A isofo... 30 6.8
gi|83700233 eukaryotic translation initiation factor 3, subunit ... 30 6.8
gi|4503525 eukaryotic translation initiation factor 3, subunit C... 30 6.8
>gi|166197708 THUMP domain containing 3 [Homo sapiens]
Length = 507
Score = 1034 bits (2673), Expect = 0.0
Identities = 507/507 (100%), Positives = 507/507 (100%)
Query: 1 MCDIEEATNQLLDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKL 60
MCDIEEATNQLLDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKL
Sbjct: 1 MCDIEEATNQLLDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKL 60
Query: 61 GSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDL 120
GSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDL
Sbjct: 61 GSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDL 120
Query: 121 AGKLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHAL 180
AGKLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHAL
Sbjct: 121 AGKLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHAL 180
Query: 181 DSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAGEKHCF 240
DSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAGEKHCF
Sbjct: 181 DSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAGEKHCF 240
Query: 241 TSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGP 300
TSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGP
Sbjct: 241 TSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGP 300
Query: 301 TTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLAVNRAA 360
TTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLAVNRAA
Sbjct: 301 TTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLAVNRAA 360
Query: 361 NNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGSKKRNW 420
NNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGSKKRNW
Sbjct: 361 NNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGSKKRNW 420
Query: 421 NLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVY 480
NLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVY
Sbjct: 421 NLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVY 480
Query: 481 VLIRTPQAFVHPSEQDGERGTLWQCKE 507
VLIRTPQAFVHPSEQDGERGTLWQCKE
Sbjct: 481 VLIRTPQAFVHPSEQDGERGTLWQCKE 507
>gi|166197706 THUMP domain containing 3 [Homo sapiens]
Length = 507
Score = 1034 bits (2673), Expect = 0.0
Identities = 507/507 (100%), Positives = 507/507 (100%)
Query: 1 MCDIEEATNQLLDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKL 60
MCDIEEATNQLLDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKL
Sbjct: 1 MCDIEEATNQLLDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKL 60
Query: 61 GSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDL 120
GSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDL
Sbjct: 61 GSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDL 120
Query: 121 AGKLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHAL 180
AGKLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHAL
Sbjct: 121 AGKLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHAL 180
Query: 181 DSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAGEKHCF 240
DSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAGEKHCF
Sbjct: 181 DSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAGEKHCF 240
Query: 241 TSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGP 300
TSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGP
Sbjct: 241 TSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGP 300
Query: 301 TTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLAVNRAA 360
TTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLAVNRAA
Sbjct: 301 TTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLAVNRAA 360
Query: 361 NNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGSKKRNW 420
NNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGSKKRNW
Sbjct: 361 NNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGSKKRNW 420
Query: 421 NLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVY 480
NLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVY
Sbjct: 421 NLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVY 480
Query: 481 VLIRTPQAFVHPSEQDGERGTLWQCKE 507
VLIRTPQAFVHPSEQDGERGTLWQCKE
Sbjct: 481 VLIRTPQAFVHPSEQDGERGTLWQCKE 507
>gi|13376880 THUMP domain containing 2 [Homo sapiens]
Length = 473
Score = 133 bits (335), Expect = 3e-31
Identities = 109/402 (27%), Positives = 193/402 (48%), Gaps = 32/402 (7%)
Query: 55 EVREKLGSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQ-EFQDYQFKQTKEEV 113
EVR +L ++ ++ GK++F + L + L+S + LF++++ +F +K ++
Sbjct: 3 EVRARLAAT-QVEYISGKVFFT-TCSDLNMLKKLKSAERLFLLIKKQFPLIISSVSKGKI 60
Query: 114 LKDFEDLAGKLP--WSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQ----EVKID 167
+ + L + P W N + +WK KK K + + N K K+ + ++KI+
Sbjct: 61 FNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIE 120
Query: 168 QRNVKKEFTSHALDSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQV-LK 226
Q +E L+ I + +++ T + + + D +T Q L
Sbjct: 121 QMQKIEENRDCQLEKQI----KEETLEQRDFTTKSEKFQEEEFQNDIEKAIDTHNQNDLT 176
Query: 227 FRVTCNRAGE-KHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIAL 285
FRV+C +G FT+ E + G A+ +F WKAD+ N +E+ ++++D +VGI +
Sbjct: 177 FRVSCRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQLEIFIHLNDIYSVVGIPV 236
Query: 286 TEESLHRRNITHFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCF 345
SL R + LRST+A+ M L D ++DPMCG G I +E A EW D +
Sbjct: 237 FRVSLASR--AYIKTAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVY 294
Query: 346 HIAGDNNPLAVNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVT 405
++ D + + +N+ K+ E K I+ ++ + LPL + SVDII++
Sbjct: 295 YVGADVSDSQLLGTWDNL-----KAAGLEDK------IELLKISVIELPLPSESVDIIIS 343
Query: 406 DLPFGKRMGSKKRNWNLYPACLREMSRVCTPTTGRAVLLTQD 447
D+PFGK+ K + L+EM RV +LL++D
Sbjct: 344 DIPFGKKFKLGKD----IKSILQEMERVLHVGGTIVLLLSED 381
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 36.2 bits (82), Expect = 0.072
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 107 KQTKEEVLKDFEDLAGKLPWSNPLKVWKINASFKK--KKAKRKKINQNSSKEKINNGQEV 164
K++++++ K+ E+ G P K + + S K+ + K+ S +E NG E
Sbjct: 519 KESEDDLNKESEEEVG------PTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEK 572
Query: 165 KIDQRNVKKEFTSHALDSHILDY-YENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQ 223
+D+ +KE + LD + + EN ++D S + D+ S + E DE S E+ E +
Sbjct: 573 DLDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGS-EREFDEDSDEKEEEE 631
Query: 224 VLKFRVTCNRAGEK 237
+V + + EK
Sbjct: 632 DTYEKVFDDESDEK 645
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 36.2 bits (82), Expect = 0.072
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 107 KQTKEEVLKDFEDLAGKLPWSNPLKVWKINASFKK--KKAKRKKINQNSSKEKINNGQEV 164
K++++++ K+ E+ G P K + + S K+ + K+ S +E NG E
Sbjct: 519 KESEDDLNKESEEEVG------PTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEK 572
Query: 165 KIDQRNVKKEFTSHALDSHILDY-YENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQ 223
+D+ +KE + LD + + EN ++D S + D+ S + E DE S E+ E +
Sbjct: 573 DLDEEGSEKELHENVLDKELEENDSENSEFEDDGSEKVLDEEGS-EREFDEDSDEKEEEE 631
Query: 224 VLKFRVTCNRAGEK 237
+V + + EK
Sbjct: 632 DTYEKVFDDESDEK 645
>gi|169234949 CWF19-like 2, cell cycle control [Homo sapiens]
Length = 894
Score = 33.9 bits (76), Expect = 0.36
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 110 KEEVLKDFEDLAGKLPWSNP-----LKVWKINASFKKKKAKRKKINQNSSKEKINNGQEV 164
KEE K+ + L G+ W P ++ + S KKKK K+ K ++ + KEK ++
Sbjct: 42 KEERRKELKRLRGEDTWMLPDVNERIEQFSQEHSVKKKK-KKDKHSKKAKKEKKKKSKKQ 100
Query: 165 KIDQRNVKKEFTSHALDSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETE 221
K ++ N + +S + D + E V + D + K + ++S K++T+
Sbjct: 101 KYEKNNESSDSSSSSEDEWV----------EAVPSQTPDKEKAWKVKDEKSGKDDTQ 147
>gi|57242807 zinc finger protein 518 [Homo sapiens]
Length = 1483
Score = 33.5 bits (75), Expect = 0.47
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 130 LKVWKINASFKKKKAKRKKINQNSSKEKINNGQEV-KIDQRNVKKEFTSHALDSHI 184
LK +KI AS +K KRKKIN S + N Q + K+++ K E SH + H+
Sbjct: 315 LKRYKIGAS-RKTFWKRKKINSGSDRSIEKNTQVLKKMNKTQTKSEDQSHVVQEHL 369
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 32.7 bits (73), Expect = 0.80
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 100 EFQDYQFKQTKEEVLKDFEDLAGKLPWSNPLKVWKINASFKKKKAKRK-KINQNSSKE-K 157
E D+Q EEV + ++ + + ++ + S+K+KK +R+ K+ ++SS E K
Sbjct: 1342 EDSDFQESGVSEEVSESEDEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSENK 1401
Query: 158 INNGQEVKIDQRNVKKEFTSHALDSHILDYYENPAI-KEDVSTLIGDDLASCKDETDESS 216
N+ +E + + ++E + D ++P ++ + ++ DD + ET +
Sbjct: 1402 SNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDD--KLRTETQNAL 1459
Query: 217 KEETE 221
KEE E
Sbjct: 1460 KEEEE 1464
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 32.7 bits (73), Expect = 0.80
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 100 EFQDYQFKQTKEEVLKDFEDLAGKLPWSNPLKVWKINASFKKKKAKRK-KINQNSSKE-K 157
E D+Q EEV + ++ + + ++ + S+K+KK +R+ K+ ++SS E K
Sbjct: 1380 EDSDFQESGVSEEVSESEDEQRPRTRSAKKAELEENQRSYKQKKKRRRIKVQEDSSSENK 1439
Query: 158 INNGQEVKIDQRNVKKEFTSHALDSHILDYYENPAI-KEDVSTLIGDDLASCKDETDESS 216
N+ +E + + ++E + D ++P ++ + ++ DD + ET +
Sbjct: 1440 SNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDD--KLRTETQNAL 1497
Query: 217 KEETE 221
KEE E
Sbjct: 1498 KEEEE 1502
>gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens]
Length = 1054
Score = 31.6 bits (70), Expect = 1.8
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 187 YYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAGEKHCFTSNEAA 246
YY+ A+KE K + DE S E+ + + +F + + +CF+S +
Sbjct: 817 YYKKVAVKEKQ-----------KRDADEESIEDVDDE--EFEELIDTFEDDNCFSSGKDD 863
Query: 247 RDFGGAVQDYFKWKADMT-----NFDVEVLLNIHDNEVIVGIALTEE 288
DF G V+ K D T + L N+ D+EV +G EE
Sbjct: 864 MDFAGNVKKRTKGAKDNTLDEDSEGSDDELGNLDDDEVSLGSMDDEE 910
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 31.6 bits (70), Expect = 1.8
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 143 KAKRKKINQNSSKEKINNGQEV--------KIDQ-RNVKKEFTSHALDSHILDYYENPAI 193
KA+ K++ +N + + N + +D+ N K +FT + L L N I
Sbjct: 30 KAELKELLENEFHQILKNPNDPDTVDIILQSLDRDHNKKVDFTEYLLMIFKLVQARNKII 89
Query: 194 KEDVSTLIG----DDLASCKDETDESSKEETEPQVLKFRVTCNRAGEKHCFTSN 243
+D + G DD ++E +E+ KEE + Q F + AGE ++ N
Sbjct: 90 GKDYCQVSGSKLRDDTHQHQEEQEETEKEENKRQESSFSHSSWSAGENDSYSRN 143
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 31.2 bits (69), Expect = 2.3
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 89 RSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDLAGKLPWSNPLKVWKINASFKKKKAKRKK 148
R D+ V++++ D EE +K+ D +G LP +K W N FK+++ + K
Sbjct: 2151 RITDDQLRVLRQYFDIN-NSPSEEQIKEMADKSG-LP-QKVIKHWFRNTLFKERQ-RNKD 2206
Query: 149 INQNSSKEKINNGQEVKIDQR 169
N S I + +E+KID R
Sbjct: 2207 SPYNFSNPPITSLEELKIDSR 2227
>gi|242332527 hypothetical protein LOC65250 [Homo sapiens]
Length = 3197
Score = 30.8 bits (68), Expect = 3.0
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 149 INQNSSKEKINNGQEVKIDQRNVKKE-FTSHALDSHILDYYENPAIKEDVSTLIGDDLAS 207
I N+ KE I+ ID+ ++ E FT +D HI DY E+ I+E V LA
Sbjct: 1878 ITHNTKKEFID------IDENLLEVEAFTEEEMDMHISDYEED--IEESVGGFRSPSLAI 1929
Query: 208 CKDETDESSKEETEPQV 224
C + +EE +V
Sbjct: 1930 CMMTLPQQLEEEFTEEV 1946
>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
sapiens]
Length = 1690
Score = 30.4 bits (67), Expect = 4.0
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 129 PLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDSHILDYY 188
PLKV ++S KK+K K +K+ Q + K + + K+D+ KK+ A S L+
Sbjct: 1493 PLKVKGKDSSEKKRKRKLEKVEQLFGEGKQKSKELKKMDKPR-KKKLKLGADKSKELNKL 1551
Query: 189 ENPAIKEDVSTLIGDDLASCKDE-TDESSKEETEPQVL 225
KE+ + A+ K E ES++++ E +VL
Sbjct: 1552 AKKLAKEEERKKKKEKAAAAKVELVKESTEKKREKKVL 1589
>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
sapiens]
Length = 1641
Score = 30.4 bits (67), Expect = 4.0
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 2/98 (2%)
Query: 129 PLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDSHILDYY 188
PLKV ++S KK+K K +K+ Q + K + + K+D+ KK+ A S L+
Sbjct: 1498 PLKVKGKDSSEKKRKRKLEKVEQLFGEGKQKSKELKKMDKPR-KKKLKLGADKSKELNKL 1556
Query: 189 ENPAIKEDVSTLIGDDLASCKDE-TDESSKEETEPQVL 225
KE+ + A+ K E ES++++ E +VL
Sbjct: 1557 AKKLAKEEERKKKKEKAAAAKVELVKESTEKKREKKVL 1594
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 30.4 bits (67), Expect = 4.0
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 22/154 (14%)
Query: 12 LDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRG 71
LD +L N + +TE L E+ELLVT + A E+R L ++ R++
Sbjct: 335 LDFSLDGN---INLTELTLALENELLVTKNSIHQAALASFKA-EIRHLLERVDQVVREKE 390
Query: 72 KIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDLAGKLPWSNPLK 131
K+ + + VD+ ++ +Y ++ EE + L +L
Sbjct: 391 KLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNEL------- 443
Query: 132 VWKINASFKKKKAKRKKINQNSSKEKINNGQEVK 165
+ +R++I Q + K+++ QE++
Sbjct: 444 -----------RKEREQILQQAGKQRLELEQEIE 466
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 30.4 bits (67), Expect = 4.0
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 22/154 (14%)
Query: 12 LDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRG 71
LD +L N + +TE L E+ELLVT + A E+R L ++ R++
Sbjct: 329 LDFSLDGN---INLTELTLALENELLVTKNSIHQAALASFKA-EIRHLLERVDQVVREKE 384
Query: 72 KIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDLAGKLPWSNPLK 131
K+ + + VD+ ++ +Y ++ EE + L +L
Sbjct: 385 KLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNEL------- 437
Query: 132 VWKINASFKKKKAKRKKINQNSSKEKINNGQEVK 165
+ +R++I Q + K+++ QE++
Sbjct: 438 -----------RKEREQILQQAGKQRLELEQEIE 460
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 30.4 bits (67), Expect = 4.0
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 22/154 (14%)
Query: 12 LDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRG 71
LD +L N + +TE L E+ELLVT + A E+R L ++ R++
Sbjct: 329 LDFSLDGN---INLTELTLALENELLVTKNSIHQAALASFKA-EIRHLLERVDQVVREKE 384
Query: 72 KIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDLAGKLPWSNPLK 131
K+ + + VD+ ++ +Y ++ EE + L +L
Sbjct: 385 KLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNEL------- 437
Query: 132 VWKINASFKKKKAKRKKINQNSSKEKINNGQEVK 165
+ +R++I Q + K+++ QE++
Sbjct: 438 -----------RKEREQILQQAGKQRLELEQEIE 460
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 30.4 bits (67), Expect = 4.0
Identities = 32/154 (20%), Positives = 63/154 (40%), Gaps = 22/154 (14%)
Query: 12 LDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGSSCKISRDRG 71
LD +L N + +TE L E+ELLVT + A E+R L ++ R++
Sbjct: 329 LDFSLDGN---INLTELTLALENELLVTKNSIHQAALASFKA-EIRHLLERVDQVVREKE 384
Query: 72 KIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDLAGKLPWSNPLK 131
K+ + + VD+ ++ +Y ++ EE + L +L
Sbjct: 385 KLRSDLDKAEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNEL------- 437
Query: 132 VWKINASFKKKKAKRKKINQNSSKEKINNGQEVK 165
+ +R++I Q + K+++ QE++
Sbjct: 438 -----------RKEREQILQQAGKQRLELEQEIE 460
>gi|11415048 nucleosome assembly protein 1-like 2 [Homo sapiens]
Length = 460
Score = 30.4 bits (67), Expect = 4.0
Identities = 48/233 (20%), Positives = 102/233 (43%), Gaps = 24/233 (10%)
Query: 5 EEATNQLLDVNLHENQKSVQVTESDLGSES----ELLVTIGATVPTGFEQTAADEVREKL 60
EEA NQ++ L E+ + + + LG + E +G G + A K
Sbjct: 16 EEAGNQIMVEGLGEHLERGEDAAAGLGDDGKCGEEAAAGLGEEGENGEDTAAGSGEDGKK 75
Query: 61 GSSC----KISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKD 116
G + R +G I +V+ + + + V + +++ Q + + + L++
Sbjct: 76 GGDTDEDSEADRPKGLIGYVLDTDFVESLPV--KVKYRVLALKKLQT-RAANLESKFLRE 132
Query: 117 FEDLAGKLP-WSNPLKVWK---INASFK--KKKAKRKKINQNSSKEKINNGQEVKIDQRN 170
F D+ K PL + INA ++ +++ + K +++ E++ + +E+ ++
Sbjct: 133 FHDIERKFAEMYQPLLEKRRQIINAIYEPTEEECEYKSDSEDCDDEEMCH-EEMYGNEEG 191
Query: 171 VKKEFTSHALDSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQ 223
+ E+ D DYY + A++E+ DD+ + T E +KEE +P+
Sbjct: 192 MVHEYVDE--DDGYEDYYYDYAVEEEEEEEEEDDI----EATGEENKEEEDPK 238
>gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 30.0 bits (66), Expect = 5.2
Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 22/169 (13%)
Query: 58 EKLGSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQ---FKQTKEEVL 114
EKL + ++ K+ + ++E L ++ CL+S+D V DYQ FK +
Sbjct: 105 EKLPNLTHLNLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTC 164
Query: 115 KDFEDLAGKLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKE 174
D D + + +V ++ + ++ + +K +N +G+E ++D+ + E
Sbjct: 165 LDTYDPEDQEAPDSDAQVDGVDKEEEDEEGEDEKDXEN------EDGEEEELDEEEDEDE 218
Query: 175 FTSHALDSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQ 223
E K++VS ++ KDE DE E+ E +
Sbjct: 219 DV------------EGDDDKDEVSE-EEEEFGLDKDEDDEDEDEDEEEE 254
>gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 30.0 bits (66), Expect = 5.2
Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 22/169 (13%)
Query: 58 EKLGSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQ---FKQTKEEVL 114
EKL + ++ K+ + ++E L ++ CL+S+D V DYQ FK +
Sbjct: 105 EKLPNLTHLNLSGKKLKDISTLEPLKKLECLKSLDLFNCEVINLNDYQESVFKLLPQLTC 164
Query: 115 KDFEDLAGKLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKE 174
D D + + +V ++ + ++ + +K +N +G+E ++D+ + E
Sbjct: 165 LDTYDPEDQEAPDSDAQVDGVDKEEEDEEGEDEKDXEN------EDGEEEELDEEEDEDE 218
Query: 175 FTSHALDSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQ 223
E K++VS ++ KDE DE E+ E +
Sbjct: 219 DV------------EGDDDKDEVSE-EEEEFGLDKDEDDEDEDEDEEEE 254
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 30.0 bits (66), Expect = 5.2
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 118 EDLAGKLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTS 177
+D + K+ K K KK+ ++ K+ + KE++ G++ + Q+ +++F
Sbjct: 219 DDASFKIKTVAQKKAEKKERERKKRDEEKAKLRKLKEKEELETGKKDQSKQKESQRKFEE 278
Query: 178 HALDSHI-LDYYENPAIKE--DVSTLIGDDLASCKDETDESSKE 218
+ S + +D PA +E + T DD K + D+ K+
Sbjct: 279 ETVKSKVTVDTGVIPASEEKAETPTAAEDDNEGDKKKKDKKKKK 322
>gi|153791492 eukaryotic translation initiation factor 3, subunit
C-like [Homo sapiens]
Length = 914
Score = 29.6 bits (65), Expect = 6.8
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 135 INASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDSHILDYYENPAIK 194
+N ++ K+ K KK+N+N++K Q++ R ++F +SHI Y +NP
Sbjct: 117 LNELWEDKEGK-KKMNKNNAKALSTLRQKI----RKYNRDF-----ESHITSYKQNPEQS 166
Query: 195 EDVSTLIGDDLASCKDETDESSKEETEPQ 223
D+ A +E E S +E E +
Sbjct: 167 -------ADEDAEKNEEDSEGSSDEDEDE 188
>gi|16751843 toll-like receptor 5 [Homo sapiens]
Length = 858
Score = 29.6 bits (65), Expect = 6.8
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 64 CKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDLAGK 123
C +SR + + + S AQ CL +++ ++V Q++ K + ++ F
Sbjct: 756 CLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQYQLMKHQSIRGFVQKQQY 815
Query: 124 LPWSNPLK-----VWKINASFKKKKAKRKKIN 150
L W L+ + K++ KK+ ++KK N
Sbjct: 816 LRWPEDLQDVGWFLHKLSQQILKKEKEKKKDN 847
>gi|6912650 semaphorin 3E [Homo sapiens]
Length = 775
Score = 29.6 bits (65), Expect = 6.8
Identities = 48/201 (23%), Positives = 75/201 (37%), Gaps = 26/201 (12%)
Query: 3 DIEEATNQLLDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKLGS 62
D + T + L + N ++ T L ++ V G +T V+ LG
Sbjct: 580 DALDKTEEHLAYGIENNSTLLECTPRSLQAKVIWFVQKGRETRKEEVKTDDRVVKMDLGL 639
Query: 63 S-CKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEV-------- 113
++ + YF +VE + VH +R + L VV +E + F + EE
Sbjct: 640 LFLRLHKSDAGTYFCQTVEH-SFVHTVRKI-TLEVVEEEKVEDMFNKDDEEDRHHRMPCP 697
Query: 114 ------------LKDFEDLAGKLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNG 161
K+F L G +SN +V + KRKK+ + SK K N
Sbjct: 698 AQSSISQGAKPWYKEFLQLIG---YSNFQRVEEYCEKVWCTDRKRKKLKMSPSKWKYANP 754
Query: 162 QEVKIDQRNVKKEFTSHALDS 182
QE K+ + H LDS
Sbjct: 755 QEKKLRSKPEHYRLPRHTLDS 775
>gi|32967605 bromodomain adjacent to zinc finger domain, 1A isoform
b [Homo sapiens]
Length = 1524
Score = 29.6 bits (65), Expect = 6.8
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 71 GKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDLAGKLPWSNPL 130
GK+ ++S + + VD L QEF++ + +Q + K+ E+ A ++
Sbjct: 590 GKLLTLVSTRDFIEDY----VDILRQAKQEFRELKAEQHR----KEREEAAARIRKRKEE 641
Query: 131 KVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKID 167
K+ + K+K+ K K+ Q +S I+ G+E + D
Sbjct: 642 KLKEQEQKMKEKQEKLKEDEQRNSTADISIGEEERED 678
>gi|32967603 bromodomain adjacent to zinc finger domain, 1A isoform
a [Homo sapiens]
Length = 1556
Score = 29.6 bits (65), Expect = 6.8
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 71 GKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDLAGKLPWSNPL 130
GK+ ++S + + VD L QEF++ + +Q + K+ E+ A ++
Sbjct: 622 GKLLTLVSTRDFIEDY----VDILRQAKQEFRELKAEQHR----KEREEAAARIRKRKEE 673
Query: 131 KVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKID 167
K+ + K+K+ K K+ Q +S I+ G+E + D
Sbjct: 674 KLKEQEQKMKEKQEKLKEDEQRNSTADISIGEEERED 710
>gi|83700233 eukaryotic translation initiation factor 3, subunit C
[Homo sapiens]
Length = 913
Score = 29.6 bits (65), Expect = 6.8
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 135 INASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDSHILDYYENPAIK 194
+N ++ K+ K KK+N+N++K Q++ R ++F +SHI Y +NP
Sbjct: 117 LNELWEDKEGK-KKMNKNNAKALSTLRQKI----RKYNRDF-----ESHITSYKQNPEQS 166
Query: 195 EDVSTLIGDDLASCKDETDESSKEETEPQ 223
D+ A +E E S +E E +
Sbjct: 167 -------ADEDAEKNEEDSEGSSDEDEDE 188
>gi|4503525 eukaryotic translation initiation factor 3, subunit C
[Homo sapiens]
Length = 913
Score = 29.6 bits (65), Expect = 6.8
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 135 INASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHALDSHILDYYENPAIK 194
+N ++ K+ K KK+N+N++K Q++ R ++F +SHI Y +NP
Sbjct: 117 LNELWEDKEGK-KKMNKNNAKALSTLRQKI----RKYNRDF-----ESHITSYKQNPEQS 166
Query: 195 EDVSTLIGDDLASCKDETDESSKEETEPQ 223
D+ A +E E S +E E +
Sbjct: 167 -------ADEDAEKNEEDSEGSSDEDEDE 188
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,052,663
Number of Sequences: 37866
Number of extensions: 833075
Number of successful extensions: 2666
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2638
Number of HSP's gapped (non-prelim): 51
length of query: 507
length of database: 18,247,518
effective HSP length: 107
effective length of query: 400
effective length of database: 14,195,856
effective search space: 5678342400
effective search space used: 5678342400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.