Guide to the Human Genome
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Name: THUMPD2 Sequence: fasta or formatted (473aa) NCBI GI: 13376880
Description:

THUMP domain containing 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         30           2
 C cysteine            1.9          9           1
 D aspartate           5.9         28           2
 E glutamate           8.0         38           3
 F phenylalanine       4.7         22           2
 G glycine             5.5         26           2
 H histidine           1.9          9           2
 I isoleucine          8.5         40           3
 K lysine             10.6         50           2
 L leucine            10.4         49           3
 M methionine          1.9          9           1
 N asparagine          3.8         18           1
 P proline             3.0         14           1
 Q glutamine           3.6         17           1
 R arginine            4.0         19           2
 S serine              7.8         37           2
 T threonine           4.4         21           2
 V valine              5.1         24           2
 W tryptophan          1.3          6           1
 Y tyrosine            1.5          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   THUMP domain containing 2 
THUMPD3               0.119   THUMP domain containing 3 
THUMPD3               0.119   THUMP domain containing 3 
PRMT3                 0.020   protein arginine methyltransferase 3 isoform 3 [Hom...
PRMT3                 0.020   protein arginine methyltransferase 3 isoform 2 [Hom...
PRMT3                 0.020   protein arginine methyltransferase 3 isoform 1 [Homo...
KIAA1598              0.015   shootin1 isoform a 
KIAA1598              0.015   shootin1 isoform b 
LOC283685             0.014   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYO10                 0.014   myosin X 
GOLGA6D               0.013   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6C               0.013   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6B               0.013   golgi autoantigen, golgin subfamily a, 6B 
IFT81                 0.012   intraflagellar transport 81-like isoform 2 
GOLGA6                0.012   golgi autoantigen, golgin subfamily a, 6 
TRMT11                0.012   tRNA methyltransferase 11 
DTNBP1                0.011   dystrobrevin binding protein 1 isoform c 
DTNBP1                0.011   dystrobrevin binding protein 1 isoform b 
DTNBP1                0.011   dystrobrevin binding protein 1 isoform a 
SFRS17A               0.011   DNA segment on chromosome X and Y (unique) 155 expre...
PLEC1                 0.011   plectin 1 isoform 11 
PLEC1                 0.011   plectin 1 isoform 10 
PLEC1                 0.011   plectin 1 isoform 8 
PLEC1                 0.011   plectin 1 isoform 7 
PLEC1                 0.011   plectin 1 isoform 6 
PLEC1                 0.011   plectin 1 isoform 3 
PLEC1                 0.011   plectin 1 isoform 2 
PLEC1                 0.011   plectin 1 isoform 1 
FHAD1                 0.011   forkhead-associated (FHA) phosphopeptide binding do...
MAP9                  0.011   aster-associated protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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