Guide to the Human Genome
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Name: THUMPD3 Sequence: fasta or formatted (507aa) NCBI GI: 166197708
Description:

THUMP domain containing 3

Not currently referenced in the text

Other entries for this name:
alt mRNA {507aa} THUMP domain containing 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         32           2
 C cysteine            2.8         14           1
 D aspartate           6.7         34           2
 E glutamate           7.3         37           2
 F phenylalanine       3.6         18           1
 G glycine             5.7         29           2
 H histidine           2.2         11           1
 I isoleucine          5.5         28           2
 K lysine              7.7         39           4
 L leucine             8.5         43           2
 M methionine          1.4          7           1
 N asparagine          5.3         27           2
 P proline             3.7         19           1
 Q glutamine           3.9         20           1
 R arginine            4.9         25           2
 S serine              6.3         32           2
 T threonine           6.5         33           2
 V valine              7.9         40           3
 W tryptophan          2.0         10           1
 Y tyrosine            1.8          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   THUMP domain containing 3 
THUMPD3               1.000   THUMP domain containing 3 
THUMPD2               0.107   THUMP domain containing 2 
HTATSF1               0.011   HIV-1 Tat specific factor 1 
HTATSF1               0.011   HIV-1 Tat specific factor 1 
CWF19L2               0.009   CWF19-like 2, cell cycle control 
ZNF518A               0.008   zinc finger protein 518 
ATRX                  0.008   transcriptional regulator ATRX isoform 2 
ATRX                  0.008   transcriptional regulator ATRX isoform 1 
CEBPZ                 0.007   CCAAT/enhancer binding protein zeta 
HRNR                  0.007   hornerin 
ZFHX3                 0.006   AT-binding transcription factor 1 
C5orf42               0.006   hypothetical protein LOC65250 
KDM5A                 0.005   retinoblastoma binding protein 2 isoform 1 
KDM5A                 0.005   retinoblastoma binding protein 2 isoform 2 
NIN                   0.005   ninein isoform 4 
NIN                   0.005   ninein isoform 5 
NIN                   0.005   ninein isoform 1 
NIN                   0.005   ninein isoform 2 
NAP1L2                0.005   nucleosome assembly protein 1-like 2 
LOC647020             0.005   PREDICTED: similar to acidic (leucine-rich) nuclear...
LOC647020             0.005   PREDICTED: similar to acidic (leucine-rich) nuclear...
EIF5B                 0.005   eukaryotic translation initiation factor 5B 
EIF3CL                0.005   eukaryotic translation initiation factor 3, subunit...
TLR5                  0.005   toll-like receptor 5 
SEMA3E                0.005   semaphorin 3E 
BAZ1A                 0.005   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.005   bromodomain adjacent to zinc finger domain, 1A isofo...
EIF3C                 0.005   eukaryotic translation initiation factor 3, subunit ...
EIF3C                 0.005   eukaryotic translation initiation factor 3, subunit C...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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