Guide to the Human Genome
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Name: PRAMEF22 Sequence: fasta or formatted (481aa) NCBI GI: 154800493
Description:

PRAME family member 22

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         19           2
 C cysteine            4.6         22           2
 D aspartate           4.8         23           2
 E glutamate           6.4         31           1
 F phenylalanine       5.0         24           2
 G glycine             4.2         20           1
 H histidine           1.5          7           1
 I isoleucine          3.7         18           1
 K lysine              3.7         18           1
 L leucine            16.6         80           2
 M methionine          2.9         14           1
 N asparagine          2.3         11           1
 P proline             5.8         28           2
 Q glutamine           4.2         20           1
 R arginine            8.7         42           2
 S serine              7.7         37           2
 T threonine           4.0         19           2
 V valine              6.2         30           2
 W tryptophan          1.7          8           1
 Y tyrosine            2.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PRAME family member 22 
PRAMEF3               0.993   PRAME family member 3 
PRAMEF18              0.912   PRAME family member 18 
PRAMEF19              0.909   PRAME family member 19 
PRAMEF25              0.702   PREDICTED: PRAME family member 25-like 
PRAMEF10              0.587   PRAME family member 10 
PRAMEF17              0.572   PRAME family member 17 
PRAMEF16              0.570   PRAME family member 16 
PRAMEF1               0.562   PRAME family member 1 
PRAMEF13              0.552   PRAME family member 13 
PRAMEF2               0.545   PRAME family member 2 
LOC645399             0.542   PREDICTED: similar to PRAME family member 10 
LOC645382             0.542   PREDICTED: similar to PRAME family member 10 
PRAMEF14              0.483   PRAME family member 14 
PRAMEF12              0.473   PRAME family member 12 
PRAMEF20              0.458   PRAME family member 20 
PRAMEF21              0.458   PRAME family member 21 
LOC729516             0.436   PREDICTED: similar to Putative PRAME family member ...
PRAMEF8               0.436   PRAME family member 8 
PRAMEF7               0.433   PRAME family member 7 
PRAMEF23              0.420   PREDICTED: PRAME family member 23 
PRAMEF15              0.420   PRAME family member 15 
PRAMEF9               0.420   PRAME family member 9 
PRAMEF5               0.416   PRAME family member 5 
PRAMEF6               0.415   PRAME family member 6 
PRAMEF11              0.414   PREDICTED: PRAME family member 11 
PRAMEF4               0.413   PRAME family member 4 
PRAMEF11              0.353   PRAME family member 11 
PRAME                 0.351   preferentially expressed antigen in melanoma 
PRAME                 0.351   preferentially expressed antigen in melanoma 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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