Guide to the Human Genome
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Name: PRAMEF16 Sequence: fasta or formatted (474aa) NCBI GI: 113865933
Description:

PRAME family member 16

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         21           2
 C cysteine            4.2         20           2
 D aspartate           4.2         20           2
 E glutamate           5.9         28           1
 F phenylalanine       4.4         21           2
 G glycine             4.0         19           2
 H histidine           2.7         13           1
 I isoleucine          4.0         19           1
 K lysine              5.3         25           1
 L leucine            17.7         84           2
 M methionine          2.7         13           1
 N asparagine          3.0         14           1
 P proline             5.9         28           1
 Q glutamine           5.3         25           3
 R arginine            6.3         30           2
 S serine              7.0         33           2
 T threonine           4.4         21           2
 V valine              3.6         17           1
 W tryptophan          1.7          8           1
 Y tyrosine            3.2         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PRAME family member 16 
PRAMEF17              0.998   PRAME family member 17 
PRAMEF10              0.859   PRAME family member 10 
LOC645382             0.749   PREDICTED: similar to PRAME family member 10 
LOC645399             0.749   PREDICTED: similar to PRAME family member 10 
PRAMEF22              0.572   PRAME family member 22 
PRAMEF18              0.566   PRAME family member 18 
PRAMEF3               0.566   PRAME family member 3 
PRAMEF19              0.563   PRAME family member 19 
PRAMEF1               0.553   PRAME family member 1 
PRAMEF13              0.544   PRAME family member 13 
PRAMEF2               0.530   PRAME family member 2 
PRAMEF14              0.514   PRAME family member 14 
PRAMEF25              0.490   PREDICTED: PRAME family member 25-like 
PRAMEF12              0.442   PRAME family member 12 
PRAMEF20              0.441   PRAME family member 20 
PRAMEF21              0.441   PRAME family member 21 
LOC729516             0.434   PREDICTED: similar to Putative PRAME family member ...
PRAMEF8               0.434   PRAME family member 8 
PRAMEF7               0.432   PRAME family member 7 
PRAMEF15              0.410   PRAME family member 15 
PRAMEF9               0.410   PRAME family member 9 
PRAMEF5               0.405   PRAME family member 5 
PRAMEF6               0.405   PRAME family member 6 
PRAMEF11              0.402   PREDICTED: PRAME family member 11 
PRAMEF4               0.401   PRAME family member 4 
PRAMEF23              0.400   PREDICTED: PRAME family member 23 
PRAMEF11              0.355   PRAME family member 11 
PRAME                 0.344   preferentially expressed antigen in melanoma 
PRAME                 0.344   preferentially expressed antigen in melanoma 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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