Guide to the Human Genome
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Name: PRAMEF9 Sequence: fasta or formatted (478aa) NCBI GI: 61102721
Description:

PRAME family member 9

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         22           2
 C cysteine            5.0         24           2
 D aspartate           4.8         23           2
 E glutamate           5.2         25           2
 F phenylalanine       4.0         19           1
 G glycine             2.9         14           1
 H histidine           1.7          8           1
 I isoleucine          4.2         20           2
 K lysine              5.6         27           2
 L leucine            17.8         85           3
 M methionine          3.3         16           1
 N asparagine          3.8         18           1
 P proline             5.2         25           2
 Q glutamine           4.8         23           1
 R arginine            7.1         34           3
 S serine              5.4         26           1
 T threonine           4.8         23           2
 V valine              5.4         26           1
 W tryptophan          1.7          8           1
 Y tyrosine            2.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PRAME family member 9 
PRAMEF15              1.000   PRAME family member 15 
PRAMEF4               0.983   PRAME family member 4 
PRAMEF5               0.964   PRAME family member 5 
PRAMEF11              0.961   PREDICTED: PRAME family member 11 
PRAMEF23              0.959   PREDICTED: PRAME family member 23 
PRAMEF6               0.959   PRAME family member 6 
PRAMEF11              0.884   PRAME family member 11 
PRAMEF20              0.801   PRAME family member 20 
PRAMEF21              0.801   PRAME family member 21 
LOC645359             0.775   PREDICTED: PRAME family member 
PRAMEF25              0.682   PREDICTED: PRAME family member 25-like 
LOC729516             0.577   PREDICTED: similar to Putative PRAME family member ...
PRAMEF7               0.576   PRAME family member 7 
PRAMEF8               0.575   PRAME family member 8 
PRAMEF12              0.572   PRAME family member 12 
PRAME                 0.443   preferentially expressed antigen in melanoma 
PRAME                 0.443   preferentially expressed antigen in melanoma 
PRAME                 0.443   preferentially expressed antigen in melanoma 
PRAME                 0.443   preferentially expressed antigen in melanoma 
PRAME                 0.443   preferentially expressed antigen in melanoma 
PRAMEF22              0.421   PRAME family member 22 
PRAMEF3               0.414   PRAME family member 3 
PRAMEF18              0.412   PRAME family member 18 
PRAMEF16              0.409   PRAME family member 16 
PRAMEF19              0.408   PRAME family member 19 
PRAMEF17              0.406   PRAME family member 17 
PRAMEF13              0.404   PRAME family member 13 
PRAMEF1               0.403   PRAME family member 1 
PRAMEF10              0.402   PRAME family member 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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