Guide to the Human Genome
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Name: PRAMEF23 Sequence: fasta or formatted (476aa) NCBI GI: 239741045
Description:

PREDICTED: PRAME family member 23

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         21           2
 C cysteine            5.9         28           3
 D aspartate           5.0         24           2
 E glutamate           5.3         25           2
 F phenylalanine       4.0         19           1
 G glycine             2.7         13           1
 H histidine           1.9          9           1
 I isoleucine          4.2         20           2
 K lysine              5.7         27           2
 L leucine            17.9         85           3
 M methionine          3.2         15           1
 N asparagine          3.6         17           1
 P proline             5.5         26           2
 Q glutamine           5.0         24           2
 R arginine            6.3         30           3
 S serine              5.9         28           1
 T threonine           4.8         23           2
 V valine              5.5         26           1
 W tryptophan          1.7          8           1
 Y tyrosine            1.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: PRAME family member 23 
PRAMEF5               0.992   PRAME family member 5 
PRAMEF6               0.986   PRAME family member 6 
PRAMEF15              0.959   PRAME family member 15 
PRAMEF9               0.959   PRAME family member 9 
PRAMEF4               0.951   PRAME family member 4 
PRAMEF11              0.937   PREDICTED: PRAME family member 11 
PRAMEF11              0.864   PRAME family member 11 
PRAMEF20              0.797   PRAME family member 20 
PRAMEF21              0.797   PRAME family member 21 
LOC645359             0.764   PREDICTED: PRAME family member 
PRAMEF25              0.663   PREDICTED: PRAME family member 25-like 
LOC729516             0.582   PREDICTED: similar to Putative PRAME family member ...
PRAMEF7               0.581   PRAME family member 7 
PRAMEF8               0.581   PRAME family member 8 
PRAMEF12              0.573   PRAME family member 12 
PRAME                 0.437   preferentially expressed antigen in melanoma 
PRAME                 0.437   preferentially expressed antigen in melanoma 
PRAME                 0.437   preferentially expressed antigen in melanoma 
PRAME                 0.437   preferentially expressed antigen in melanoma 
PRAME                 0.437   preferentially expressed antigen in melanoma 
PRAMEF22              0.421   PRAME family member 22 
PRAMEF3               0.414   PRAME family member 3 
PRAMEF18              0.407   PRAME family member 18 
PRAMEF19              0.403   PRAME family member 19 
PRAMEF13              0.401   PRAME family member 13 
PRAMEF1               0.400   PRAME family member 1 
PRAMEF16              0.399   PRAME family member 16 
PRAMEF17              0.397   PRAME family member 17 
PRAMEF10              0.397   PRAME family member 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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