Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PRAMEF12 Sequence: fasta or formatted (483aa) NCBI GI: 124249372
Description:

PRAME family member 12

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         29           2
 C cysteine            5.2         25           2
 D aspartate           3.7         18           1
 E glutamate           7.0         34           2
 F phenylalanine       4.6         22           1
 G glycine             4.8         23           2
 H histidine           2.1         10           1
 I isoleucine          5.0         24           2
 K lysine              3.5         17           1
 L leucine            18.0         87           2
 M methionine          2.3         11           1
 N asparagine          2.3         11           1
 P proline             5.6         27           2
 Q glutamine           5.4         26           2
 R arginine            6.2         30           2
 S serine              6.8         33           1
 T threonine           4.1         20           2
 V valine              4.6         22           2
 W tryptophan          1.7          8           1
 Y tyrosine            1.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PRAME family member 12 
LOC729516             0.812   PREDICTED: similar to Putative PRAME family member ...
PRAMEF8               0.810   PRAME family member 8 
PRAMEF7               0.809   PRAME family member 7 
PRAMEF5               0.575   PRAME family member 5 
PRAMEF6               0.575   PRAME family member 6 
PRAMEF20              0.572   PRAME family member 20 
PRAMEF21              0.572   PRAME family member 21 
PRAMEF23              0.571   PREDICTED: PRAME family member 23 
PRAMEF15              0.569   PRAME family member 15 
PRAMEF9               0.569   PRAME family member 9 
PRAMEF4               0.560   PRAME family member 4 
PRAMEF11              0.555   PREDICTED: PRAME family member 11 
PRAMEF25              0.549   PREDICTED: PRAME family member 25-like 
PRAMEF11              0.494   PRAME family member 11 
PRAMEF22              0.471   PRAME family member 22 
PRAMEF18              0.467   PRAME family member 18 
PRAMEF3               0.465   PRAME family member 3 
PRAMEF19              0.463   PRAME family member 19 
PRAME                 0.463   preferentially expressed antigen in melanoma 
PRAME                 0.463   preferentially expressed antigen in melanoma 
PRAME                 0.463   preferentially expressed antigen in melanoma 
PRAME                 0.463   preferentially expressed antigen in melanoma 
PRAME                 0.463   preferentially expressed antigen in melanoma 
PRAMEF13              0.459   PRAME family member 13 
PRAMEF1               0.459   PRAME family member 1 
PRAMEF10              0.455   PRAME family member 10 
LOC645359             0.442   PREDICTED: PRAME family member 
PRAMEF2               0.442   PRAME family member 2 
PRAMEF17              0.441   PRAME family member 17 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press