Guide to the Human Genome
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Name: PRAME Sequence: fasta or formatted (509aa) NCBI GI: 46249369
Description:

preferentially expressed antigen in melanoma

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt mRNA [509aa] preferentially expressed antigen in melanoma
alt mRNA [509aa] preferentially expressed antigen in melanoma
alt mRNA [509aa] preferentially expressed antigen in melanoma
alt mRNA [509aa] preferentially expressed antigen in melanoma
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         29           2
 C cysteine            2.8         14           2
 D aspartate           4.5         23           2
 E glutamate           6.1         31           2
 F phenylalanine       3.9         20           2
 G glycine             3.7         19           1
 H histidine           2.9         15           1
 I isoleucine          3.9         20           1
 K lysine              4.3         22           2
 L leucine            17.9         91           3
 M methionine          3.1         16           1
 N asparagine          2.0         10           1
 P proline             5.9         30           2
 Q glutamine           5.3         27           1
 R arginine            5.5         28           3
 S serine              8.8         45           2
 T threonine           4.1         21           2
 V valine              5.5         28           1
 W tryptophan          1.6          8           1
 Y tyrosine            2.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   preferentially expressed antigen in melanoma 
PRAME                 1.000   preferentially expressed antigen in melanoma 
PRAME                 1.000   preferentially expressed antigen in melanoma 
PRAME                 1.000   preferentially expressed antigen in melanoma 
PRAME                 1.000   preferentially expressed antigen in melanoma 
PRAMEF12              0.445   PRAME family member 12 
LOC729516             0.431   PREDICTED: similar to Putative PRAME family member ...
PRAMEF8               0.429   PRAME family member 8 
PRAMEF7               0.428   PRAME family member 7 
PRAMEF15              0.424   PRAME family member 15 
PRAMEF9               0.424   PRAME family member 9 
PRAMEF5               0.421   PRAME family member 5 
PRAMEF4               0.421   PRAME family member 4 
PRAMEF6               0.421   PRAME family member 6 
PRAMEF23              0.418   PREDICTED: PRAME family member 23 
PRAMEF20              0.414   PRAME family member 20 
PRAMEF21              0.414   PRAME family member 21 
PRAMEF11              0.413   PREDICTED: PRAME family member 11 
PRAMEF25              0.375   PREDICTED: PRAME family member 25-like 
PRAMEF11              0.363   PRAME family member 11 
PRAMEF10              0.338   PRAME family member 10 
PRAMEF22              0.337   PRAME family member 22 
PRAMEF13              0.335   PRAME family member 13 
PRAMEF17              0.330   PRAME family member 17 
PRAMEF18              0.330   PRAME family member 18 
PRAMEF1               0.329   PRAME family member 1 
PRAMEF3               0.329   PRAME family member 3 
PRAMEF16              0.329   PRAME family member 16 
PRAMEF19              0.326   PRAME family member 19 
PRAMEF2               0.318   PRAME family member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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