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Search of human proteins with 164663816
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|164663816 LIM domain binding 1 isoform 1 [Homo sapiens]
(411 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|164663816 LIM domain binding 1 isoform 1 [Homo sapiens] 863 0.0
gi|4504969 LIM domain binding 1 isoform 3 [Homo sapiens] 781 0.0
gi|4504971 LIM domain binding 2 isoform a [Homo sapiens] 593 e-170
gi|195546926 LIM domain binding 2 isoform b [Homo sapiens] 460 e-129
gi|219842247 periphilin 1 isoform 7 [Homo sapiens] 33 0.36
gi|48255929 periphilin 1 isoform 1 [Homo sapiens] 33 0.36
gi|41872344 periphilin 1 isoform 3 [Homo sapiens] 33 0.36
gi|41872368 periphilin 1 isoform 2 [Homo sapiens] 33 0.36
gi|148833504 interleukin 16 isoform 2 [Homo sapiens] 33 0.47
gi|149408119 Ies6-similar protein isoform 1 [Homo sapiens] 33 0.61
gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 ... 32 1.0
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 1.0
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 32 1.4
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 31 1.8
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 31 1.8
gi|239757158 PREDICTED: hypothetical protein [Homo sapiens] 31 2.3
gi|239751647 PREDICTED: hypothetical protein XP_002347957 [Homo ... 31 2.3
gi|239746157 PREDICTED: hypothetical protein XP_002343679 [Homo ... 31 2.3
gi|153792074 proline rich 12 [Homo sapiens] 31 2.3
gi|225735631 mesoderm induction early response 1 isoform g [Homo... 30 3.0
gi|225735619 mesoderm induction early response 1 isoform i [Homo... 30 3.0
gi|225735617 mesoderm induction early response 1 isoform h [Homo... 30 3.0
gi|225735615 mesoderm induction early response 1 isoform a [Homo... 30 3.0
gi|118130872 mesoderm induction early response 1 isoform f [Homo... 30 3.0
gi|225735612 mesoderm induction early response 1 isoform e [Homo... 30 3.0
gi|225735610 mesoderm induction early response 1 isoform d [Homo... 30 3.0
gi|118130815 mesoderm induction early response 1 isoform c [Homo... 30 3.0
gi|225735607 mesoderm induction early response 1 isoform b [Homo... 30 3.0
gi|225735605 mesoderm induction early response 1 isoform a [Homo... 30 3.0
gi|74229008 core-binding factor, runt domain, alpha subunit 2; t... 30 3.0
>gi|164663816 LIM domain binding 1 isoform 1 [Homo sapiens]
Length = 411
Score = 863 bits (2229), Expect = 0.0
Identities = 411/411 (100%), Positives = 411/411 (100%)
Query: 1 MSVGCACPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRH 60
MSVGCACPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRH
Sbjct: 1 MSVGCACPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRH 60
Query: 61 TPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIG 120
TPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIG
Sbjct: 61 TPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIG 120
Query: 121 RTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEG 180
RTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEG
Sbjct: 121 RTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEG 180
Query: 181 RLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTL 240
RLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTL
Sbjct: 181 RLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTL 240
Query: 241 NYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRK 300
NYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRK
Sbjct: 241 NYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRK 300
Query: 301 MSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITR 360
MSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITR
Sbjct: 301 MSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDEDERLITR 360
Query: 361 LENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ 411
LENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ
Sbjct: 361 LENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ 411
>gi|4504969 LIM domain binding 1 isoform 3 [Homo sapiens]
Length = 375
Score = 781 bits (2018), Expect = 0.0
Identities = 375/375 (100%), Positives = 375/375 (100%)
Query: 37 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE 96
MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE
Sbjct: 1 MLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTE 60
Query: 97 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS 156
FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS
Sbjct: 61 FFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVS 120
Query: 157 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH 216
LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH
Sbjct: 121 LDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMH 180
Query: 217 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ 276
AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ
Sbjct: 181 AQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQ 240
Query: 277 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD 336
KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD
Sbjct: 241 KWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPD 300
Query: 337 VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS 396
VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS
Sbjct: 301 VMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPS 360
Query: 397 SQESKSENPTSQASQ 411
SQESKSENPTSQASQ
Sbjct: 361 SQESKSENPTSQASQ 375
>gi|4504971 LIM domain binding 2 isoform a [Homo sapiens]
Length = 373
Score = 593 bits (1529), Expect = e-170
Identities = 281/358 (78%), Positives = 320/358 (89%), Gaps = 1/358 (0%)
Query: 55 PGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGP 114
P RHTPY Q +YRI+E+NKRLQ+ TE+ DNLWWDAF TEFFEDDA LT++FCLEDGP
Sbjct: 16 PFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGP 75
Query: 115 KRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFT 174
KRYTIGRTLIPRYF ++FEGG T+LYY+LKH KE++H++ +++DCDQ +MVTQHGKPMFT
Sbjct: 76 KRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFT 135
Query: 175 QVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCG 234
+VC EGRL LEF FDD+MRIKTWHF+IRQ+REL+PRSILAMHAQDPQ+LDQLSKNITR G
Sbjct: 136 KVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMG 195
Query: 235 LSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPS 294
L+N TLNYLRLCVILEPMQELMSRHKTY+LSPRDCLKTCLFQKWQRMVAPPAEPTRQ +
Sbjct: 196 LTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTT 255
Query: 295 KRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGDE 353
KRRKRK S ST SS G N N++ SKKK+ A+ +LSSQVPDVMVVGEPTLMGGEFGDE
Sbjct: 256 KRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDE 315
Query: 354 DERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWNSKPPSSQESKSENPTSQASQ 411
DERLITRLENTQ+DAANG+DDE+ FNNSPALG NSPWNSKPP++QE+KSENP QASQ
Sbjct: 316 DERLITRLENTQYDAANGMDDEEDFNNSPALGNNSPWNSKPPATQETKSENPPPQASQ 373
>gi|195546926 LIM domain binding 2 isoform b [Homo sapiens]
Length = 331
Score = 460 bits (1183), Expect = e-129
Identities = 219/299 (73%), Positives = 255/299 (85%), Gaps = 1/299 (0%)
Query: 55 PGIGRHTPYGNQTDYRIFELNKRLQNWTEECDNLWWDAFTTEFFEDDAMLTITFCLEDGP 114
P RHTPY Q +YRI+E+NKRLQ+ TE+ DNLWWDAF TEFFEDDA LT++FCLEDGP
Sbjct: 16 PFYRRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGP 75
Query: 115 KRYTIGRTLIPRYFRSIFEGGATELYYVLKHPKEAFHSNFVSLDCDQGSMVTQHGKPMFT 174
KRYTIGRTLIPRYF ++FEGG T+LYY+LKH KE++H++ +++DCDQ +MVTQHGKPMFT
Sbjct: 76 KRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFT 135
Query: 175 QVCVEGRLYLEFMFDDMMRIKTWHFSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCG 234
+VC EGRL LEF FDD+MRIKTWHF+IRQ+REL+PRSILAMHAQDPQ+LDQLSKNITR G
Sbjct: 136 KVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMG 195
Query: 235 LSNSTLNYLRLCVILEPMQELMSRHKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPS 294
L+N TLNYLRLCVILEPMQELMSRHKTY+LSPRDCLKTCLFQKWQRMVAPPAEPTRQ +
Sbjct: 196 LTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTRQPTT 255
Query: 295 KRRKRKMSGGSTM-SSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMGGEFGD 352
KRRKRK S ST SS G N N++ SKKK+ A+ +LSSQVP + + +L G GD
Sbjct: 256 KRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPGLGAIPNCSLNPGRDGD 314
>gi|219842247 periphilin 1 isoform 7 [Homo sapiens]
Length = 348
Score = 33.5 bits (75), Expect = 0.36
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 18 YSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFE 73
Y + P A P HP +R V P PP PG G + Y + DYR ++
Sbjct: 7 YEYERIPRERAPPRSHPSDGYNRLVNIVPKKPPLLDRPGEGSYNRYYSHVDYRDYD 62
>gi|48255929 periphilin 1 isoform 1 [Homo sapiens]
Length = 458
Score = 33.5 bits (75), Expect = 0.36
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 18 YSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFE 73
Y + P A P HP +R V P PP PG G + Y + DYR ++
Sbjct: 7 YEYERIPRERAPPRSHPSDGYNRLVNIVPKKPPLLDRPGEGSYNRYYSHVDYRDYD 62
>gi|41872344 periphilin 1 isoform 3 [Homo sapiens]
Length = 367
Score = 33.5 bits (75), Expect = 0.36
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 18 YSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFE 73
Y + P A P HP +R V P PP PG G + Y + DYR ++
Sbjct: 7 YEYERIPRERAPPRSHPSDGYNRLVNIVPKKPPLLDRPGEGSYNRYYSHVDYRDYD 62
>gi|41872368 periphilin 1 isoform 2 [Homo sapiens]
Length = 374
Score = 33.5 bits (75), Expect = 0.36
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 18 YSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYPPTYLEPGIGRHTPYGNQTDYRIFE 73
Y + P A P HP +R V P PP PG G + Y + DYR ++
Sbjct: 14 YEYERIPRERAPPRSHPSDGYNRLVNIVPKKPPLLDRPGEGSYNRYYSHVDYRDYD 69
>gi|148833504 interleukin 16 isoform 2 [Homo sapiens]
Length = 1332
Score = 33.1 bits (74), Expect = 0.47
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 14/148 (9%)
Query: 199 FSIRQHRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSR 258
++I H + P I+ DPQ+ +Q K + N+ R LE ++ L S
Sbjct: 422 YTILSHCDPGPVPIIVSRHPDPQVSEQQLKEAVAQAVENTKFGKERHQWSLEGVKRLES- 480
Query: 259 HKTYSLSPRDCLKTCLFQKWQRMVAPPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSN 318
S R L+ ++ ++ APP ++ K R S S MS G + S
Sbjct: 481 ----SWHGRPTLE----KEREKNSAPP----HRRAQKVMIRSSSDSSYMSGSPGGSPGSG 528
Query: 319 SKKKSPASTFALSSQVPDVMVVGEPTLM 346
S +K P+S +S+ P + + EP ++
Sbjct: 529 SAEK-PSSDVDISTHSPSLPLAREPVVL 555
>gi|149408119 Ies6-similar protein isoform 1 [Homo sapiens]
Length = 228
Score = 32.7 bits (73), Expect = 0.61
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 297 RKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVPDVMVVGEPTLMG 347
+KR S SSGGG ++ KKK+ AS+FA + P M+V P G
Sbjct: 21 KKRPASPSHNGSSGGGY--GASKKKKASASSFAQTCLSPSTMIVRPPQPRG 69
>gi|10092601 eukaryotic translation initiation factor 4 gamma, 3
[Homo sapiens]
Length = 1585
Score = 32.0 bits (71), Expect = 1.0
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 17/139 (12%)
Query: 283 APPAEPTRQQ--PSKRRKRKM------SGGSTMSS---GGGNTNNSNSKKKSPASTFALS 331
AP PT+QQ P+KR K+ + GG ++ GG + N P ST
Sbjct: 122 APIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRNPTPPIGRPTSTPTPP 181
Query: 332 SQVPDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAANGIDDEDSFNNSPALGANSPWN 391
Q+P + P + G E L +T AA+ E+ P L + SP
Sbjct: 182 QQLPSQVPEHSPVVYGTV---ESAHLAA---STPVTAASDQKQEEKPKPDPVLKSPSPVL 235
Query: 392 SKPPSSQESKSENPTSQAS 410
S ++ + E TS+ +
Sbjct: 236 RLVLSGEKKEQEGQTSETT 254
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.0 bits (71), Expect = 1.0
Identities = 34/149 (22%), Positives = 59/149 (39%), Gaps = 21/149 (14%)
Query: 284 PPAEPTRQQPS---------KRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQV 334
PPA QQPS +RR S S+ SS ++++S+S +S+ + S +
Sbjct: 2509 PPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL 2568
Query: 335 P-----DVMVVGEPTLMGGEFGDEDE-------RLITRLENTQFDAANGIDDEDSFNNSP 382
P + V PT E E + R ++ +++ S ++S
Sbjct: 2569 PVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSS 2628
Query: 383 ALGANSPWNSKPPSSQESKSENPTSQASQ 411
+ ++S +S SS S S +P Q
Sbjct: 2629 SSSSSSSSSSSSSSSSSSSSPSPAKPGPQ 2657
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 31.6 bits (70), Expect = 1.4
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 278 WQRMVAPPAE--PTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNS 319
+ + VAPPA P+ QP + GG S GGG++++SNS
Sbjct: 371 YAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNS 414
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 31.2 bits (69), Expect = 1.8
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 283 APPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKS 323
AP AE +Q ++RR R S S+ SS ++++S+S S
Sbjct: 172 APGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSS 212
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 31.2 bits (69), Expect = 1.8
Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 22/148 (14%)
Query: 284 PPAEPTRQQPSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSS-------QVPD 336
PP P R RRK++ +G +S GG + S K+ + AL + ++P+
Sbjct: 368 PPGTPRRTGKGNRRKKRAAGRGALSRGGDSAPLSPGDKEDASHQEALGNLPSPSEHKLPE 427
Query: 337 VMVVGEPTLMGGEFGDEDERLITRLE-NTQFDAANGIDDEDSFN---NSPAL-------G 385
+V E G+ E + L T E Q A G +E + P L G
Sbjct: 428 CHLVKEEYEGSGKPESEPKELKTAGEKEPQLSEACGPTEEGAGERELEGPGLLCMAGHTG 487
Query: 386 ANSPWNSKP----PSSQESKSENPTSQA 409
P + P + QE K +N +A
Sbjct: 488 PEGPLSDTPTPPLETVQEGKGDNIPEEA 515
>gi|239757158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 30.8 bits (68), Expect = 2.3
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 4 GCACPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYP--PTYLEPGIGRHT 61
G PGC++ +L SP+ P+ A PP T + GPT P P P GR +
Sbjct: 90 GRGAPGCAALPSRLPSPRPRPSRRAPPPVSRRTARGWEPGPTLGRPRGPARRPPLGGRVS 149
Query: 62 P 62
P
Sbjct: 150 P 150
>gi|239751647 PREDICTED: hypothetical protein XP_002347957 [Homo
sapiens]
Length = 150
Score = 30.8 bits (68), Expect = 2.3
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 4 GCACPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYP--PTYLEPGIGRHT 61
G PGC++ +L SP+ P+ A PP T + GPT P P P GR +
Sbjct: 90 GRGAPGCAALPSRLPSPRPRPSRRAPPPVSRRTARGWEPGPTLGRPRGPARRPPLGGRVS 149
Query: 62 P 62
P
Sbjct: 150 P 150
>gi|239746157 PREDICTED: hypothetical protein XP_002343679 [Homo
sapiens]
Length = 150
Score = 30.8 bits (68), Expect = 2.3
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 4 GCACPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPMYP--PTYLEPGIGRHT 61
G PGC++ +L SP+ P+ A PP T + GPT P P P GR +
Sbjct: 90 GRGAPGCAALPSRLPSPRPRPSRRAPPPVSRRTARGWEPGPTLGRPRGPARRPPLGGRVS 149
Query: 62 P 62
P
Sbjct: 150 P 150
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 30.8 bits (68), Expect = 2.3
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 284 PPAEPTRQQ----PSKRRKRKMSGGSTMSSGGGNTNNSNSKKKSPASTFALSSQVP 335
P A PT+ + P KR+K G ++GGG +S+ + SP + VP
Sbjct: 1782 PKARPTKVKAEPPPKKRKKWLKEAGGNATAGGGPPGSSSDSESSPGAPSEDERAVP 1837
>gi|225735631 mesoderm induction early response 1 isoform g [Homo
sapiens]
Length = 470
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 356 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 411
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 97 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 154
>gi|225735619 mesoderm induction early response 1 isoform i [Homo
sapiens]
Length = 370
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 356 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 411
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 17 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 74
>gi|225735617 mesoderm induction early response 1 isoform h [Homo
sapiens]
Length = 485
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 356 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 411
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 53 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 110
>gi|225735615 mesoderm induction early response 1 isoform a [Homo
sapiens]
Length = 529
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 356 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 411
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 97 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 154
>gi|118130872 mesoderm induction early response 1 isoform f [Homo
sapiens]
Length = 433
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 356 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 411
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 80 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 137
>gi|225735612 mesoderm induction early response 1 isoform e [Homo
sapiens]
Length = 486
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 356 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 411
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 133 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 190
>gi|225735610 mesoderm induction early response 1 isoform d [Homo
sapiens]
Length = 450
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 356 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 411
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 97 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 154
>gi|118130815 mesoderm induction early response 1 isoform c [Homo
sapiens]
Length = 512
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 356 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 411
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 80 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 137
>gi|225735607 mesoderm induction early response 1 isoform b [Homo
sapiens]
Length = 565
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 356 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 411
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 133 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 190
>gi|225735605 mesoderm induction early response 1 isoform a [Homo
sapiens]
Length = 529
Score = 30.4 bits (67), Expect = 3.0
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 356 RLITRLENTQFDAANGIDDEDSFN--NSPALGANSPWNSKPPSSQESKSENPTSQASQ 411
RL E + + G DDED+ N NS G N N K S QE ++++ SQ
Sbjct: 97 RLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQ 154
>gi|74229008 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1c [Homo sapiens]
Length = 595
Score = 30.4 bits (67), Expect = 3.0
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 6 ACPGCSSKSFKLYSPKEPPNGNAFPPFHPGTMLDRDVGPTPM-YPPTYLEPGIGRHTP 62
A PG S K+ S PP PP +PG GP P+ + PT L GI P
Sbjct: 20 AMPG-SPVEVKIQSRSSPPTMPPLPPINPG-------GPRPVSFTPTALSNGINHSPP 69
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,718,801
Number of Sequences: 37866
Number of extensions: 945639
Number of successful extensions: 3396
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 3334
Number of HSP's gapped (non-prelim): 89
length of query: 411
length of database: 18,247,518
effective HSP length: 105
effective length of query: 306
effective length of database: 14,271,588
effective search space: 4367105928
effective search space used: 4367105928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.