Guide to the Human Genome
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Name: PPHLN1 Sequence: fasta or formatted (367aa) NCBI GI: 41872344
Description:

periphilin 1 isoform 3

Referenced in:

Stomach, Small Intestine, and Colon

Other entries for this name:
alt prot [434aa] periphilin 1 isoform 6
alt prot [348aa] periphilin 1 isoform 7
alt prot [293aa] periphilin 1 isoform 8
alt prot [258aa] periphilin 1 isoform 5
alt prot [319aa] periphilin 1 isoform 4
alt prot [374aa] periphilin 1 isoform 2
alt prot [458aa] periphilin 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         16           2
 C cysteine            0.5          2           1
 D aspartate           6.3         23           2
 E glutamate          10.6         39           2
 F phenylalanine       3.5         13           2
 G glycine             5.2         19           1
 H histidine           3.3         12           1
 I isoleucine          2.7         10           1
 K lysine              6.3         23           2
 L leucine             4.6         17           2
 M methionine          1.1          4           1
 N asparagine          2.5          9           1
 P proline             7.1         26           2
 Q glutamine           3.3         12           1
 R arginine           10.6         39           2
 S serine             14.4         53           3
 T threonine           4.1         15           2
 V valine              3.5         13           2
 W tryptophan          0.8          3           1
 Y tyrosine            5.2         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   periphilin 1 isoform 3 
PPHLN1                1.000   periphilin 1 isoform 2 
PPHLN1                0.928   periphilin 1 isoform 7 
PPHLN1                0.924   periphilin 1 isoform 1 
PPHLN1                0.768   periphilin 1 isoform 4 
PPHLN1                0.696   periphilin 1 isoform 8 
PPHLN1                0.692   periphilin 1 isoform 6 
PPHLN1                0.591   periphilin 1 isoform 5 
LOC100170229          0.037   hypothetical protein LOC100170229 
KIAA1853              0.030   KIAA1853 protein 
CRKRS                 0.030   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.030   Cdc2-related kinase, arginine/serine-rich isoform 1...
SFRS2B                0.030   splicing factor, arginine/serine-rich 2B 
SFRS8                 0.028   splicing factor, arginine/serine-rich 8 
PPIG                  0.028   peptidylprolyl isomerase G 
SFRS16                0.028   splicing factor, arginine/serine-rich 16 
CDC2L5                0.026   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.026   cell division cycle 2-like 5 isoform 2 
DHX38                 0.026   DEAH (Asp-Glu-Ala-His) box polypeptide 38 
SFRS4                 0.026   splicing factor, arginine/serine-rich 4 
SFRS11                0.026   splicing factor, arginine/serine-rich 11 
RSRC2                 0.023   arginine/serine-rich coiled-coil 2 isoform a 
BUD13                 0.023   BUD13 homolog isoform 2 
PHRF1                 0.022   PHD and ring finger domains 1 
ZNF638                0.022   zinc finger protein 638 
ZNF638                0.022   zinc finger protein 638 
RSRC2                 0.022   arginine/serine-rich coiled-coil 2 isoform b 
SPEN                  0.022   spen homolog, transcriptional regulator 
FUSIP1                0.022   FUS interacting protein (serine-arginine rich) 1 iso...
PRPF4B                0.022   serine/threonine-protein kinase PRP4K 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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