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Search of human proteins with 162951873
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|162951873 ventral anterior homeobox 1 isoform a [Homo
sapiens]
(334 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 659 0.0
gi|40217622 ventral anterior homeobox 1 isoform b [Homo sapiens] 291 6e-79
gi|7110735 ventral anterior homeobox 2 [Homo sapiens] 223 2e-58
gi|14149728 BarH-like homeobox 1 [Homo sapiens] 87 2e-17
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 87 2e-17
gi|122937319 even-skipped homeobox 2 [Homo sapiens] 86 5e-17
gi|24497589 aristaless related homeobox [Homo sapiens] 86 6e-17
gi|94536800 empty spiracles homolog 1 [Homo sapiens] 81 1e-15
gi|14149611 empty spiracles homeobox 2 [Homo sapiens] 80 2e-15
gi|7657180 VENT homeobox [Homo sapiens] 80 3e-15
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 78 1e-14
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 77 2e-14
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 77 2e-14
gi|12707580 paired-like homeobox 2b [Homo sapiens] 77 3e-14
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens] 76 4e-14
gi|126090909 engrailed homeobox 1 [Homo sapiens] 76 5e-14
gi|7710121 engrailed homeobox 2 [Homo sapiens] 76 5e-14
gi|4503615 even-skipped homeobox 1 [Homo sapiens] 76 5e-14
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 75 1e-13
gi|19923391 homeobox D3 [Homo sapiens] 75 1e-13
gi|24497515 homeobox A3 isoform b [Homo sapiens] 74 2e-13
gi|24497513 homeobox A3 isoform a [Homo sapiens] 74 2e-13
gi|13562112 homeobox A3 isoform a [Homo sapiens] 74 2e-13
gi|118582284 msh homeobox 1 [Homo sapiens] 73 4e-13
gi|23397672 homeobox D4 [Homo sapiens] 73 4e-13
gi|84570137 homeobox B3 [Homo sapiens] 73 4e-13
gi|4502365 NK3 homeobox 2 [Homo sapiens] 73 4e-13
gi|226437602 NK1 homeobox 2 [Homo sapiens] 72 5e-13
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 72 5e-13
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 72 5e-13
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 659 bits (1700), Expect = 0.0
Identities = 334/334 (100%), Positives = 334/334 (100%)
Query: 1 MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC 60
MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC
Sbjct: 1 MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC 60
Query: 61 NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ 120
NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ
Sbjct: 61 NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ 120
Query: 121 RCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQGKDSELRSVVSETAATCSVLR 180
RCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQGKDSELRSVVSETAATCSVLR
Sbjct: 121 RCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQGKDSELRSVVSETAATCSVLR 180
Query: 181 LLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAA 240
LLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAA
Sbjct: 181 LLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAA 240
Query: 241 SPHPPAVGGAPGPGPAGPGGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLA 300
SPHPPAVGGAPGPGPAGPGGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLA
Sbjct: 241 SPHPPAVGGAPGPGPAGPGGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLA 300
Query: 301 GNLQELSARYLSSSAFEPYSRTNNKEGAEKKALD 334
GNLQELSARYLSSSAFEPYSRTNNKEGAEKKALD
Sbjct: 301 GNLQELSARYLSSSAFEPYSRTNNKEGAEKKALD 334
>gi|40217622 ventral anterior homeobox 1 isoform b [Homo sapiens]
Length = 186
Score = 291 bits (745), Expect = 6e-79
Identities = 150/167 (89%), Positives = 152/167 (91%), Gaps = 5/167 (2%)
Query: 1 MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC 60
MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC
Sbjct: 1 MFGKPDKMDVRCHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDC 60
Query: 61 NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ 120
NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ
Sbjct: 61 NKSKSNSAADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQ 120
Query: 121 RCQYVVGRERTELARQLNLSETQVKVWFQNRR-----TKQKKDQGKD 162
RCQYVVGRERTELARQLNLSETQ N R KQKK + K+
Sbjct: 121 RCQYVVGRERTELARQLNLSETQANSEENNERFKRGIKKQKKKRKKE 167
>gi|7110735 ventral anterior homeobox 2 [Homo sapiens]
Length = 290
Score = 223 bits (567), Expect = 2e-58
Identities = 150/283 (53%), Positives = 167/283 (59%), Gaps = 56/283 (19%)
Query: 50 AFSASGAAEDCNKSKSNSA-ADPDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFT 108
A S +G+ E S + D+CRRILVRDAKG+IREI+LPKGLDLDRPKRTRTSFT
Sbjct: 51 ASSPAGSRESGADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFT 110
Query: 109 AEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQGKDSELR-- 166
AEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQ +D E R
Sbjct: 111 AEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRAS 170
Query: 167 SVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSA 226
S SE AT ++LRLLEQGRLLS P P+LL AL +L P LPA G + G
Sbjct: 171 SSASEAFATSNILRLLEQGRLLSVPRAPSLL------ALTPSL--PGLPASHRGTSLGDP 222
Query: 227 AAAAAAAPGPAGAASPHPPAVGGAPGPGPAGPGGLHAGAPAAGHSLFSLPVPSLLGSVAS 286
++ P +AS PP P P PA
Sbjct: 223 RNSSPRL-NPLSSASASPPL----PPPLPA-----------------------------V 248
Query: 287 RLSSAPLTMAGSLAGNLQELSARY-LSSSAFEPYSRTNNKEGA 328
SSAPL +L A Y L SSAFEPYS K G+
Sbjct: 249 CFSSAPLL----------DLPAGYELGSSAFEPYSWLERKVGS 281
>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
Length = 327
Score = 87.4 bits (215), Expect = 2e-17
Identities = 75/213 (35%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 40 PAAFLKEPQGAFSASGAAED----CNKSKSNSAADPDYCRRILVRDAKGSIREIILPKG- 94
PAA EP G +A AAED +KS SN+++D +Y + + REI +
Sbjct: 120 PAA--PEPGGRLAAK-AAEDFRDKLDKSGSNASSDSEY------KVKEEGDREISSSRDS 170
Query: 95 --LDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRR 152
+ L +P++ RT+FT QL +LE F+R +Y+ ++R ELA LNL++TQVK W+QNRR
Sbjct: 171 PPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRR 230
Query: 153 TKQKKDQGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGP 212
TK K+ EL + A S L+ + P L + L P GA RGP
Sbjct: 231 TKWKRQTAVGLELLA----EAGNYSALQRMFPSPYFYPQSLVSNLDP---GAALYLYRGP 283
Query: 213 SLPALGAGAAAGSAAAAAAAAPGPAGAASPHPP 245
S P A G GA+ P PP
Sbjct: 284 SAPP----PALQRPLVPRILIHGLQGASEPPPP 312
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 87.0 bits (214), Expect = 2e-17
Identities = 81/227 (35%), Positives = 106/227 (46%), Gaps = 20/227 (8%)
Query: 98 DRPK-----RTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRR 152
+RPK + R F+ Q++ LE F++ +Y+ ER LA L L+ TQVK+WFQNRR
Sbjct: 141 ERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRR 200
Query: 153 TKQKKD-QGKDSELRS-VVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALR 210
K K+ Q K EL + +V L+ G+ P A P + GA SA
Sbjct: 201 YKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGA--SAYS 258
Query: 211 GPSLPALGAGAAAGSAAAAAAAAPGPAGAAS----PHPPAVGGAPGPGPAGPGGLHAGAP 266
S PA G G +A +AAAAAAAA A +S +P GG G A +
Sbjct: 259 YNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPACS 318
Query: 267 AAGHSLFSLPVPSLLGSVASRLSSAPL---TMAGSLA--GNLQELSA 308
AAG F S LG S S+ PL T AG+ G LQ + A
Sbjct: 319 AAGGGPF--VNVSNLGGFGSGGSAQPLHQGTAAGAACAQGTLQGIRA 363
>gi|122937319 even-skipped homeobox 2 [Homo sapiens]
Length = 476
Score = 85.9 bits (211), Expect = 5e-17
Identities = 113/369 (30%), Positives = 141/369 (38%), Gaps = 119/369 (32%)
Query: 37 GNLPAAFLKEPQG-AFSASGAAEDCNKSKSNSAADPDYCRRILVRDAKGSIREIILP-KG 94
G L AA LKE G ++ SG+A S S S L + GS L G
Sbjct: 129 GGLGAAQLKENNGKGYAESGSAAGTTTSASGSGLGS------LHGGSGGSGGSAALGGSG 182
Query: 95 LDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTK 154
D+ +R RT+FT EQ+ RLE EF R YV R ELA LNL ET +KVWFQNRR K
Sbjct: 183 SGADQVRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMK 242
Query: 155 QKKDQ--------GKDSELRSVVSETAATCSV---------------------------- 178
K+ + S +++ AAT S+
Sbjct: 243 DKRQRLAMSWPHPADPSFYTYMMTHAAATGSLPYPFHSHVPLHYYPHVGVTAAAAAAAAS 302
Query: 179 -------------LRLLEQGRLLSPP-GLPALLPPCATGALGSALRGPSL---PALGAG- 220
+R L+ R LS P P LL + R P L PA AG
Sbjct: 303 GAAAAASSPFATSIRPLDTFRALSHPYSRPELL---------CSFRHPGLYQAPAAAAGL 353
Query: 221 --AAAGSAAAAAAAAPGPAGAASPHPPAVGGAP--------------------------- 251
AA+ +AAAAAAAA + AA+ PP+ G AP
Sbjct: 354 NSAASAAAAAAAAAAAASSAAAAGAPPSGGSAPCSCLSCHSSQSAAAAAAAAAAALGSRG 413
Query: 252 --GPGPAGPGGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLAGNLQELSAR 309
G G G GG GA A G S F ++AP + +G L SA
Sbjct: 414 GGGGGGGGGGGGGGGAGAGGGSDFGCS------------AAAPRSESGFL-----PYSAA 456
Query: 310 YLSSSAFEP 318
LS +A P
Sbjct: 457 VLSKTAVSP 465
Score = 31.2 bits (69), Expect = 1.4
Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 198 PPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAPGPGPAG 257
PP A S L S + + AAA +AAAAA + G G GG G G
Sbjct: 379 PPSGGSAPCSCL---SCHSSQSAAAAAAAAAAALGSRGGGGGGGGGGGGGGGGAGAGGGS 435
Query: 258 PGGLHAGAP--AAGHSLFSLPVPSLLG-SVASRLSSAPLT 294
G A AP +G +S V S S + APLT
Sbjct: 436 DFGCSAAAPRSESGFLPYSAAVLSKTAVSPPDQRDEAPLT 475
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 85.5 bits (210), Expect = 6e-17
Identities = 92/279 (32%), Positives = 118/279 (42%), Gaps = 48/279 (17%)
Query: 42 AFLKEPQ----GAFSASGAAEDCNKSKSNSAADPDYCRRILVRDAKGSIRE--IILPKGL 95
A LKEP+ A A AA + P + DA+G E + L G
Sbjct: 258 ALLKEPRRCPVAATGAVAAAAAAAVATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAGS 317
Query: 96 DLD------RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQ 149
D + + +R RT+FT+ QL LE FQ+ Y R ELA +L+L+E +V+VWFQ
Sbjct: 318 DSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQ 377
Query: 150 NRRTKQKKDQGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSAL 209
NRR K +K + + G PPGLP P AT L L
Sbjct: 378 NRRAKWRKRE-----------------------KAGAQTHPPGLPFPGPLSATHPLSPYL 414
Query: 210 -RGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAPGPGPAGPGGLHA--GAP 266
P P A +A +AAAAAAAA P+ PP G A P P GL GA
Sbjct: 415 DASPFPPHHPALDSAWTAAAAAAAAAFPS-----LPPPPGSASLPPSGAPLGLSTFLGAA 469
Query: 267 AAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLAGNLQE 305
H F P L S + APLT A + A L++
Sbjct: 470 VFRHPAFISPAFGRLFS-----TMAPLTSASTAAALLRQ 503
Score = 45.1 bits (105), Expect = 9e-05
Identities = 44/115 (38%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 184 QGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAA-AAPGPAGAASP 242
+ L PP L L P G L+G A A AAA +AAAAAA A GP G A P
Sbjct: 76 EAELHLPPKLRRLYGPGG----GRLLQG----AAAAAAAAAAAAAAAATATAGPRGEAPP 127
Query: 243 HPPAVGGAPGPGPAGPGGLHAGAPAAGHSLFSL-----PVPSLLGSVASRLSSAP 292
PP PG P G G A A AA + +L P S+ S + R + AP
Sbjct: 128 PPPPT-ARPGERPDGAGAAAAAAAAAAAAWDTLKISQAPQVSISRSKSYRENGAP 181
>gi|94536800 empty spiracles homolog 1 [Homo sapiens]
Length = 290
Score = 81.3 bits (199), Expect = 1e-15
Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 4/70 (5%)
Query: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKK- 157
+PKR RT+F+ QL RLE F++ YVVG ER +LA L+LSETQVKVWFQNRRTK K+
Sbjct: 191 KPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQ 250
Query: 158 ---DQGKDSE 164
++G +SE
Sbjct: 251 KLEEEGPESE 260
>gi|14149611 empty spiracles homeobox 2 [Homo sapiens]
Length = 252
Score = 80.5 bits (197), Expect = 2e-15
Identities = 40/70 (57%), Positives = 52/70 (74%), Gaps = 4/70 (5%)
Query: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKK- 157
+PKR RT+F+ QL RLE F++ YVVG ER +LA L+L+ETQVKVWFQNRRTK K+
Sbjct: 153 KPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTKFKRQ 212
Query: 158 ---DQGKDSE 164
++G DS+
Sbjct: 213 KLEEEGSDSQ 222
>gi|7657180 VENT homeobox [Homo sapiens]
Length = 258
Score = 79.7 bits (195), Expect = 3e-15
Identities = 67/177 (37%), Positives = 82/177 (46%), Gaps = 28/177 (15%)
Query: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 158
R R RT+FT EQ+ LE FQ QY+ ER LAR++ LSE Q+K WFQNRR K K+
Sbjct: 90 RAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKR- 148
Query: 159 QGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATG----ALGSALRGPSL 214
Q +D +L S S G L +PP + A G + L GP
Sbjct: 149 QMQDPQLHSPFS--------------GSLHAPPAFYSTSSGLANGLQLLCPWAPLSGPQA 194
Query: 215 PALGAGAAAG--SAAAAAAAAPGPAGAASP---HPPAVGGAPGPGPA---GPGGLHA 263
L G+ G A A A+ G + P HPP G P GPA GP GL A
Sbjct: 195 LMLPPGSFWGLCQVAQEALASAGASCCGQPLASHPP-TPGRPSLGPALSTGPRGLCA 250
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 77.8 bits (190), Expect = 1e-14
Identities = 82/272 (30%), Positives = 107/272 (39%), Gaps = 63/272 (23%)
Query: 12 CHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDCNKSKSNSAADP 71
C AE S A + + G N P A + P G +A G A + + +AA P
Sbjct: 190 CQGAAETD-ASPGATVDEAAAPGPRENSPVA--QGPPGGAAAPGGAGTTPQGTA-TAAKP 245
Query: 72 DYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERT 131
R+ D+K +P+R RT+FT EQL LE +F+ +Y+ ER
Sbjct: 246 K--RKRTGSDSKSG-------------KPRRARTAFTYEQLVALENKFKATRYLSVCERL 290
Query: 132 ELARQLNLSETQVKVWFQNRRTKQKKDQGKDSELRSVVSETAATCSVLRLLEQGRLLSPP 191
LA L+L+ETQVK+WFQNRRTK KK P
Sbjct: 291 NLALSLSLTETQVKIWFQNRRTKWKKQN-------------------------------P 319
Query: 192 GLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAP 251
G P TG G P GAG G + +P P A P + G
Sbjct: 320 GADTSAP---TGGGGG-------PGPGAGPGTGLPGGLSPLSPSPPMGA---PLGMHGPA 366
Query: 252 GPGPAGPGGLHAGAPAAGHSLFSLPVPSLLGS 283
G GPGGL A S ++ P +LGS
Sbjct: 367 GYPAHGPGGLVCAAQLPFLSSPAVLSPFVLGS 398
Score = 30.8 bits (68), Expect = 1.8
Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 203 GALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAPGPGPAGPGGLH 262
GA GS +G + GA AAAPGP + P G PG G A PGG
Sbjct: 184 GARGSGCQGAAETDASPGATVDE-----AAAPGP----RENSPVAQGPPG-GAAAPGG-- 231
Query: 263 AGAPAAGHSLFSLPVPSLLGS 283
AG G + + P GS
Sbjct: 232 AGTTPQGTATAAKPKRKRTGS 252
Score = 30.0 bits (66), Expect = 3.0
Identities = 29/99 (29%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 177 SVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAA---AGSAAAAAAAA 233
SVL +L+ + S LL P A A P PA A A A A
Sbjct: 46 SVLDILDPNKFNSRRRRCVLLGPVAPAACAPCASAPCAPAPAASGRPPRAEELERRALAG 105
Query: 234 PGPAGAASPHPPAVGGAPGPGPAGPGGLHA-GAPAAGHS 271
G GAA PP G G A + + GHS
Sbjct: 106 AGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHS 144
Score = 29.3 bits (64), Expect = 5.2
Identities = 19/55 (34%), Positives = 21/55 (38%)
Query: 203 GALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAPGPGPAG 257
G G RG A+ A AAAPGP + GGA PG AG
Sbjct: 179 GGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAG 233
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 77.0 bits (188), Expect = 2e-14
Identities = 82/272 (30%), Positives = 106/272 (38%), Gaps = 63/272 (23%)
Query: 12 CHSDAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAEDCNKSKSNSAADP 71
C AE S A + + G N P A P G +A G A + + +AA P
Sbjct: 593 CQGAAETD-ASPGATVDEAAAPGPRENSPVA--PGPPGGAAAPGGAGTTPQGTA-TAAKP 648
Query: 72 DYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERT 131
R+ D+K +P+R RT+FT EQL LE +F+ +Y+ ER
Sbjct: 649 K--RKRTGSDSKSG-------------KPRRARTAFTYEQLVALENKFKATRYLSVCERL 693
Query: 132 ELARQLNLSETQVKVWFQNRRTKQKKDQGKDSELRSVVSETAATCSVLRLLEQGRLLSPP 191
LA L+L+ETQVK+WFQNRRTK KK P
Sbjct: 694 NLALSLSLTETQVKIWFQNRRTKWKKQN-------------------------------P 722
Query: 192 GLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAP 251
G P TG G P GAG G + +P P A P + G
Sbjct: 723 GADTSAP---TGGGGG-------PGPGAGPGTGLPGGLSPLSPSPPMGA---PLGMHGPA 769
Query: 252 GPGPAGPGGLHAGAPAAGHSLFSLPVPSLLGS 283
G GPGGL A S ++ P +LGS
Sbjct: 770 GYPAHGPGGLVCAAQLPFLSSPAVLSPFVLGS 801
Score = 32.3 bits (72), Expect = 0.61
Identities = 20/55 (36%), Positives = 22/55 (40%)
Query: 203 GALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAPGPGPAG 257
G G RG A+ A AAAPGP + P GGA PG AG
Sbjct: 582 GGGGLGARGSGCQGAAETDASPGATVDEAAAPGPRENSPVAPGPPGGAAAPGGAG 636
Score = 30.0 bits (66), Expect = 3.0
Identities = 29/99 (29%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 177 SVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAA---AGSAAAAAAAA 233
SVL +L+ + S LL P A A P PA A A A A
Sbjct: 449 SVLDILDPNKFNSRRRRCVLLGPVAPAACAPCASAPCAPAPAASGRPPRAEELERRALAG 508
Query: 234 PGPAGAASPHPPAVGGAPGPGPAGPGGLHA-GAPAAGHS 271
G GAA PP G G A + + GHS
Sbjct: 509 AGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHS 547
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 77.0 bits (188), Expect = 2e-14
Identities = 56/145 (38%), Positives = 72/145 (49%), Gaps = 5/145 (3%)
Query: 94 GLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRT 153
G+ R K+TRT F+ Q+++LE F +Y+ ER LA L L+ETQVK+WFQNRR
Sbjct: 197 GVGGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRN 256
Query: 154 KQKKDQGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATG-ALGSALRGP 212
K K+ + E S+ A + +L SPP A PP L A P
Sbjct: 257 KWKRQLAAELEAASLSPPGAQRLVRVPVLYHE---SPPAAAAAGPPATLPFPLAPAAPAP 313
Query: 213 SLPALG-AGAAAGSAAAAAAAAPGP 236
P LG +GA A AA AAA P
Sbjct: 314 PPPLLGFSGALAYPLAAFPAAASVP 338
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 76.6 bits (187), Expect = 3e-14
Identities = 63/194 (32%), Positives = 80/194 (41%), Gaps = 48/194 (24%)
Query: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTK---- 154
+ +R RT+FT+ QL LE F Y R ELA +++L+E +V+VWFQNRR K
Sbjct: 97 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 156
Query: 155 -----------------QKKDQGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALL 197
+K D +D E + S + P P
Sbjct: 157 ERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTG-----------GPGPNPNPT 205
Query: 198 PPCA-----------TGALGSALRG-----PSLPALGAGAAAGSAAAAAAAAPGPAGAAS 241
P C GA G+A G P A AAA +AAAAAAAA G A+
Sbjct: 206 PSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAA 265
Query: 242 PHPPAVGGAPGPGP 255
P G APGPGP
Sbjct: 266 AGGPGQGWAPGPGP 279
>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 653
Score = 76.3 bits (186), Expect = 4e-14
Identities = 62/185 (33%), Positives = 78/185 (42%), Gaps = 44/185 (23%)
Query: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 158
+P+R RT+FT EQL LE +F+ +Y+ ER LA L+L+ETQVK+WFQNRRTK KK
Sbjct: 96 KPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 155
Query: 159 QGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALG 218
PG P TG G P G
Sbjct: 156 N-------------------------------PGADTSAP---TGGGGG-------PGPG 174
Query: 219 AGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAPGPGPAGPGGLHAGAPAAGHSLFSLPVP 278
AG G + +P P A P + G G GPGGL A S ++ P
Sbjct: 175 AGPGTGLPGGLSPLSPSPPMGA---PLGMHGPAGYPAHGPGGLVCAAQLPFLSSPAVLSP 231
Query: 279 SLLGS 283
+LGS
Sbjct: 232 FVLGS 236
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 75.9 bits (185), Expect = 5e-14
Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 73 YCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE 132
YC R R + G R L K + KR RT+FTAEQL RL+ EFQ +Y+ + R
Sbjct: 277 YCTRYSDRPSSGP-RTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQT 335
Query: 133 LARQLNLSETQVKVWFQNRRTKQKKDQG 160
LA++L+L+E+Q+K+WFQN+R K KK G
Sbjct: 336 LAQELSLNESQIKIWFQNKRAKIKKATG 363
Score = 43.5 bits (101), Expect = 3e-04
Identities = 46/147 (31%), Positives = 56/147 (38%), Gaps = 14/147 (9%)
Query: 191 PGLPALLPPCATGALGSALRGPSLPALGAGA------AAGSAAAAAAAAPGPAGAASPHP 244
PG +LL CA A G A GAGA AA +AAAAAA A A AA+
Sbjct: 164 PGAASLL--CAPDANCGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPS 221
Query: 245 PAVGGAPGPGPAGPGGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLAGNLQ 304
GG G G PG P G+ L + G V S PL +
Sbjct: 222 DTGGGGSGGGAGSPGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWV----- 276
Query: 305 ELSARYLSSSAFEPYSRTNNKEGAEKK 331
RY + P +R K+ EK+
Sbjct: 277 -YCTRYSDRPSSGPRTRKLKKKKNEKE 302
Score = 32.3 bits (72), Expect = 0.61
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 189 SPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVG 248
+P GL L P A+G+ GS G S+P A AA P A PH P
Sbjct: 23 TPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPPAAPCL----PPLAHHPHLP--- 75
Query: 249 GAPGPGPAGPGGLHAGAPA 267
P P P H APA
Sbjct: 76 ----PHPPPPPPQHLAAPA 90
Score = 28.5 bits (62), Expect = 8.8
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 216 ALGAGAAAGSAAAAAAAAPGPAGA--ASPHPPAVGGAPGPGPAGPGGLHAGAPAAGH 270
ALGA AAA + + +PG +G+ + +V +P P P P P A H
Sbjct: 15 ALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPPAAPCLPPLAHH 71
>gi|7710121 engrailed homeobox 2 [Homo sapiens]
Length = 333
Score = 75.9 bits (185), Expect = 5e-14
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 8/158 (5%)
Query: 15 DAEAARVSKNAHKESRESKGAEGNLPAAFLKEPQGAFSASGAAE-DCNKSKSNSAADPD- 72
D E + + H +++ G L + G S +++ D +++ +N A P
Sbjct: 153 DGEGGSKTLSLHGGAKKGGDPGGPLDGSLKARGLGGGDLSVSSDSDSSQAGANLGAQPML 212
Query: 73 -----YCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVG 127
YC R R + G K + + KR RT+FTAEQL RL+ EFQ +Y+
Sbjct: 213 WPAWVYCTRYSDRPSSGPRSRKPKKKNPNKE-DKRPRTAFTAEQLQRLKAEFQTNRYLTE 271
Query: 128 RERTELARQLNLSETQVKVWFQNRRTKQKKDQGKDSEL 165
+ R LA++L+L+E+Q+K+WFQN+R K KK G + L
Sbjct: 272 QRRQSLAQELSLNESQIKIWFQNKRAKIKKATGNKNTL 309
Score = 33.5 bits (75), Expect = 0.27
Identities = 39/145 (26%), Positives = 50/145 (34%), Gaps = 19/145 (13%)
Query: 206 GSALRGPSLPALGAGAAAGSAAAAAAAA-------PGPAGAASPHPPAVGGAPGPGPAGP 258
G+ G + A G G A GS + + P GA P P A +PG G G
Sbjct: 99 GAGGEGGASGAEGGGGAGGSEQLLGSGSREPRQNPPCAPGAGGPLPAAGSDSPGDGEGGS 158
Query: 259 ------GGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLAGNLQEL------ 306
GG G G SL L G S S + + AG+ G L
Sbjct: 159 KTLSLHGGAKKGGDPGGPLDGSLKARGLGGGDLSVSSDSDSSQAGANLGAQPMLWPAWVY 218
Query: 307 SARYLSSSAFEPYSRTNNKEGAEKK 331
RY + P SR K+ K+
Sbjct: 219 CTRYSDRPSSGPRSRKPKKKNPNKE 243
>gi|4503615 even-skipped homeobox 1 [Homo sapiens]
Length = 407
Score = 75.9 bits (185), Expect = 5e-14
Identities = 65/186 (34%), Positives = 77/186 (41%), Gaps = 37/186 (19%)
Query: 98 DRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKK 157
D+ +R RT+FT EQ+ RLE EF R YV R ELA LNL ET +KVWFQNRR K K+
Sbjct: 181 DQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKR 240
Query: 158 DQ-------GKDSELRSVVSETAATCSVLRLLEQGRL----LSPPGLPA----------- 195
+ D + + AA L L SP GL A
Sbjct: 241 QRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLGAASAASAAASPF 300
Query: 196 ------------LLPPCATGALGSALRGPSL---PALGAGAAAGSAAAAAAAAPGPAGAA 240
L P L A R P L PA G GA+AG + A GPA
Sbjct: 301 SGSLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLGASAGGPCSCLACHSGPANGL 360
Query: 241 SPHPPA 246
+P A
Sbjct: 361 APRAAA 366
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 74.7 bits (182), Expect = 1e-13
Identities = 68/209 (32%), Positives = 93/209 (44%), Gaps = 34/209 (16%)
Query: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 158
+ +R RT FT++QL LE FQR +Y R E+A NL+E +V+VWF+NRR K +K
Sbjct: 61 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 120
Query: 159 QGKDSELRSVVSETAATCSVLRLLEQGRLLSP-----PGL-------PALLPPCATGALG 206
+ S+ A C G L+ P PG AL PP A
Sbjct: 121 ER---------SQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTFP 171
Query: 207 SALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAPGPGP-----AGPGGL 261
A ++ L A S ++ AA+ P+ AA+P G PGPG GP GL
Sbjct: 172 FAFNSVNVGPL-ASQPVFSPPSSIAASMVPSAAAAP-----GTVPGPGALQGLGGGPPGL 225
Query: 262 HAGAPAAGHSLFSLPVPSLLGSVASRLSS 290
A ++G S P S + A+ SS
Sbjct: 226 APAAVSSG--AVSCPYASAAAAAAAAASS 252
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 74.7 bits (182), Expect = 1e-13
Identities = 63/186 (33%), Positives = 80/186 (43%), Gaps = 26/186 (13%)
Query: 101 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQG 160
KR RT++T+ QL LE EF +Y+ R E+A LNL+E Q+K+WFQNRR K KKDQ
Sbjct: 195 KRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 254
Query: 161 KDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGA- 219
L S S++ L G LPP G A PS PA
Sbjct: 255 AKGILHSPASQSPERSPPL-----GGAAGHVAYSGQLPPVP----GLAYDAPSPPAFAKS 305
Query: 220 -----GAAAGSAAAAAAAAPGPAGAA---SPHPPAVGGA--------PGPGPAGPGGLHA 263
G AA +A ++ AA PHP A G P G + +
Sbjct: 306 QPNMYGLAAYTAPLSSCLPQQKRYAAPEFEPHPMASNGGGFASANLQGSPVYVGGNFVES 365
Query: 264 GAPAAG 269
APA+G
Sbjct: 366 MAPASG 371
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 73.6 bits (179), Expect = 2e-13
Identities = 64/175 (36%), Positives = 78/175 (44%), Gaps = 26/175 (14%)
Query: 101 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQ- 159
KR RT++T+ QL LE EF +Y+ R E+A LNL+E Q+K+WFQNRR K KKDQ
Sbjct: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
Query: 160 --------GKDSELRSVVSETAA--TCSVLRLLEQ--GRLLSPPGLPALLPPCATGALGS 207
G S RS V A S+ L+ SPP P PP T L
Sbjct: 94 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPP--PFSKPPQGTYGLPP 151
Query: 208 ALRGPSLPA-----------LGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAP 251
A SLP+ AGA AG A G G S P + G+P
Sbjct: 152 ASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGSP 206
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 73.6 bits (179), Expect = 2e-13
Identities = 64/175 (36%), Positives = 78/175 (44%), Gaps = 26/175 (14%)
Query: 101 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQ- 159
KR RT++T+ QL LE EF +Y+ R E+A LNL+E Q+K+WFQNRR K KKDQ
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
Query: 160 --------GKDSELRSVVSETAA--TCSVLRLLEQ--GRLLSPPGLPALLPPCATGALGS 207
G S RS V A S+ L+ SPP P PP T L
Sbjct: 252 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPP--PFSKPPQGTYGLPP 309
Query: 208 ALRGPSLPA-----------LGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAP 251
A SLP+ AGA AG A G G S P + G+P
Sbjct: 310 ASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGSP 364
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 73.6 bits (179), Expect = 2e-13
Identities = 64/175 (36%), Positives = 78/175 (44%), Gaps = 26/175 (14%)
Query: 101 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQ- 159
KR RT++T+ QL LE EF +Y+ R E+A LNL+E Q+K+WFQNRR K KKDQ
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
Query: 160 --------GKDSELRSVVSETAA--TCSVLRLLEQ--GRLLSPPGLPALLPPCATGALGS 207
G S RS V A S+ L+ SPP P PP T L
Sbjct: 252 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPP--PFSKPPQGTYGLPP 309
Query: 208 ALRGPSLPA-----------LGAGAAAGSAAAAAAAAPGPAGAASPHPPAVGGAP 251
A SLP+ AGA AG A G G S P + G+P
Sbjct: 310 ASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGSP 364
>gi|118582284 msh homeobox 1 [Homo sapiens]
Length = 303
Score = 72.8 bits (177), Expect = 4e-13
Identities = 52/146 (35%), Positives = 73/146 (50%), Gaps = 27/146 (18%)
Query: 101 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQG 160
++ RT FT QL LE +F++ QY+ ER E + L+L+ETQVK+WFQNRR K K+ Q
Sbjct: 173 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQE 232
Query: 161 KDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAG 220
+ LE+ ++ + P +LPP A G L L GP+ A AG
Sbjct: 233 AE-------------------LEKLKMAAKP----MLPPAAFG-LSFPLGGPAAVAAAAG 268
Query: 221 AAAGSAAA---AAAAAPGPAGAASPH 243
A+ A+ AA P G + H
Sbjct: 269 ASLYGASGPFQRAALPVAPVGLYTAH 294
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 72.8 bits (177), Expect = 4e-13
Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 100 PKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQ 159
PKR+RT++T +Q+ LE EF +Y+ R R E+A L LSE Q+K+WFQNRR K KKD
Sbjct: 154 PKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDH 213
Query: 160 G-KDSELRSVVSETAATCS 177
+++ RS S ++++CS
Sbjct: 214 KLPNTKGRSSSSSSSSSCS 232
Score = 31.2 bits (69), Expect = 1.4
Identities = 30/91 (32%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 184 QGRLLSPPGLPALLPPCATGALGSALRGP--SLPALGAGAAAGSAAAAAAAAPGPAGAAS 241
QG PPGL P G + GP +LPA G G G AA G
Sbjct: 42 QGADFQPPGLYPR-PDFGEQPFGGSGPGPGSALPARGHGQEPGGPGGHYAA----PGEPC 96
Query: 242 PHPPAVGGAPGPGPAGPGGLHAGAPAAGHSL 272
P PPA AP PG P +G +L
Sbjct: 97 PAPPAPPPAPLPGARAYSQSDPKQPPSGTAL 127
Score = 30.4 bits (67), Expect = 2.3
Identities = 34/111 (30%), Positives = 37/111 (33%), Gaps = 26/111 (23%)
Query: 198 PPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHP-----PAVGGAPG 252
PPC L+G L GA G A A PG P P P G PG
Sbjct: 18 PPCE-----EYLQGGYLGEQGADYYGGGAQGADFQPPG----LYPRPDFGEQPFGGSGPG 68
Query: 253 PG-----------PAGPGGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAP 292
PG P GPGG H AP P P+ L + S P
Sbjct: 69 PGSALPARGHGQEPGGPGG-HYAAPGEPCPAPPAPPPAPLPGARAYSQSDP 118
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 72.8 bits (177), Expect = 4e-13
Identities = 69/196 (35%), Positives = 82/196 (41%), Gaps = 32/196 (16%)
Query: 101 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQ- 159
KR RT++T+ QL LE EF +Y+ R E+A LNLSE Q+K+WFQNRR K KKDQ
Sbjct: 189 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK 248
Query: 160 --------GKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRG 211
G S S +T + L P + PP A +A
Sbjct: 249 AKGLASSSGGPSPAGSPPQPMQSTAGFMNALHS----MTPSYESPSPPAFGKAHQNAYAL 304
Query: 212 PS---LPALGAGAAAGSAAAAAAAAPGPAGAASPHP-PAVGGAPG-------PGPAGPGG 260
PS P G G A P PA PH A GGA G P G GG
Sbjct: 305 PSNYQPPLKGCG-------APQKYPPTPAPEYEPHVLQANGGAYGTPTMQGSPVYVGGGG 357
Query: 261 -LHAGAPAAGHSLFSL 275
P AG SL+ L
Sbjct: 358 YADPLPPPAGPSLYGL 373
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 72.8 bits (177), Expect = 4e-13
Identities = 43/105 (40%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 158
R KR+R +F+ Q++ LE F +Y+ G ER +LA L L+ETQVK+WFQNRR K K+
Sbjct: 205 RKKRSRAAFSHAQVFELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRR 264
Query: 159 QGKDSELRSVVSETAATCSVL-----RLLEQGRLLSPPGLPALLP 198
Q L S + VL R G +L PP L L P
Sbjct: 265 QMAADLLASAPAAKKVAVKVLVRDDQRQYLPGEVLRPPSLLPLQP 309
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 72.4 bits (176), Expect = 5e-13
Identities = 49/145 (33%), Positives = 63/145 (43%), Gaps = 44/145 (30%)
Query: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 158
+P+R RT+FT EQL LE +F+ +Y+ ER LA L+L+ETQVK+WFQNRRTK KK
Sbjct: 162 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 221
Query: 159 QGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALG 218
GA G+A G P
Sbjct: 222 N------------------------------------------PGADGAAQVGGGAPQ-- 237
Query: 219 AGAAAGSAAAAAAAAPGPAGAASPH 243
GAA G + +PGP G + H
Sbjct: 238 PGAAGGGGGGGSGGSPGPPGTGALH 262
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 11/40 (27%)
Query: 234 PGPAGAA-----SPHPPAVGGAPG------PGPAGPGGLH 262
PG GAA +P P A GG G PGP G G LH
Sbjct: 223 PGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALH 262
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 72.4 bits (176), Expect = 5e-13
Identities = 52/139 (37%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 101 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQG 160
KRTRT++T QL LE EF +Y+ R ELA LNL+E +K+WFQNRR K KK++
Sbjct: 147 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEED 206
Query: 161 KDSELRSV-----VSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLP 215
K + V+E C+V E L PP +PP A A A G P
Sbjct: 207 KKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPPPPPPGGAVPPAAPVA---AREGRLPP 263
Query: 216 ALGAGAAAGSAAAAAAAAP 234
L A S A P
Sbjct: 264 GLSASPQPSSVAPRRPQEP 282
Score = 28.9 bits (63), Expect = 6.7
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 190 PPGLPALLPPCATGALGSALRG--PSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAV 247
PP P P GALG+ +G P + A A A PA A PHPPA
Sbjct: 43 PPPPPHPFP----GALGALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPA- 97
Query: 248 GGAPGPGPAGPGGL 261
P P A PG L
Sbjct: 98 --GPFPEGAEPGVL 109
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 72.4 bits (176), Expect = 5e-13
Identities = 49/145 (33%), Positives = 63/145 (43%), Gaps = 44/145 (30%)
Query: 99 RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKD 158
+P+R RT+FT EQL LE +F+ +Y+ ER LA L+L+ETQVK+WFQNRRTK KK
Sbjct: 184 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 243
Query: 159 QGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALG 218
GA G+A G P
Sbjct: 244 N------------------------------------------PGADGAAQVGGGAPQ-- 259
Query: 219 AGAAAGSAAAAAAAAPGPAGAASPH 243
GAA G + +PGP G + H
Sbjct: 260 PGAAGGGGGGGSGGSPGPPGTGALH 284
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 11/40 (27%)
Query: 234 PGPAGAA-----SPHPPAVGGAPG------PGPAGPGGLH 262
PG GAA +P P A GG G PGP G G LH
Sbjct: 245 PGADGAAQVGGGAPQPGAAGGGGGGGSGGSPGPPGTGALH 284
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,753,398
Number of Sequences: 37866
Number of extensions: 898691
Number of successful extensions: 19323
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 1118
Number of HSP's that attempted gapping in prelim test: 8405
Number of HSP's gapped (non-prelim): 7512
length of query: 334
length of database: 18,247,518
effective HSP length: 103
effective length of query: 231
effective length of database: 14,347,320
effective search space: 3314230920
effective search space used: 3314230920
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.