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Search of human proteins with 15812178
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo
sapiens]
(494 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens] 1014 0.0
gi|15812180 butyrate response factor 1 [Homo sapiens] 246 3e-65
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens] 146 4e-35
gi|55750053 atrophin-1 [Homo sapiens] 55 1e-07
gi|55750041 atrophin-1 [Homo sapiens] 55 1e-07
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 55 1e-07
gi|19111150 angiomotin isoform 2 [Homo sapiens] 55 2e-07
gi|166064029 angiomotin isoform 1 [Homo sapiens] 55 2e-07
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 54 2e-07
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 52 9e-07
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 52 9e-07
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 52 9e-07
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 51 2e-06
gi|110832843 TBP-associated factor 4 [Homo sapiens] 51 3e-06
gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo sap... 50 6e-06
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 49 8e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 49 8e-06
gi|5454064 RNA binding motif protein 14 [Homo sapiens] 49 1e-05
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 49 1e-05
gi|11641239 hypothetical protein LOC53838 [Homo sapiens] 47 4e-05
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 47 5e-05
gi|120952764 mastermind-like domain containing 1 [Homo sapiens] 46 7e-05
gi|33946327 nucleoporin 214kDa [Homo sapiens] 46 9e-05
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 46 9e-05
gi|119226260 calcium homeostasis endoplasmic reticulum protein [... 45 1e-04
gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo sapi... 45 2e-04
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 45 2e-04
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 45 2e-04
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens] 45 2e-04
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 44 3e-04
>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
Length = 494
Score = 1014 bits (2622), Expect = 0.0
Identities = 494/494 (100%), Positives = 494/494 (100%)
Query: 1 MSTTLLSAFYDVDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRRHSASN 60
MSTTLLSAFYDVDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRRHSASN
Sbjct: 1 MSTTLLSAFYDVDFLCKTEKSLANLNLNNMLDKKAVGTPVAAAPSSGFAPGFLRRHSASN 60
Query: 61 LHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNKENKFR 120
LHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNKENKFR
Sbjct: 61 LHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLNKENKFR 120
Query: 121 DRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGF 180
DRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGF
Sbjct: 121 DRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKCQFAHGF 180
Query: 181 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGTRD 240
HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGTRD
Sbjct: 181 HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGTRD 240
Query: 241 ALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCS 300
ALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCS
Sbjct: 241 ALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCS 300
Query: 301 SSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCAN 360
SSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCAN
Sbjct: 301 SSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCAN 360
Query: 361 NAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAG 420
NAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAG
Sbjct: 361 NAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAG 420
Query: 421 AAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPG 480
AAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPG
Sbjct: 421 AAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPG 480
Query: 481 RRLPIFSRLSISDD 494
RRLPIFSRLSISDD
Sbjct: 481 RRLPIFSRLSISDD 494
>gi|15812180 butyrate response factor 1 [Homo sapiens]
Length = 338
Score = 246 bits (629), Expect = 3e-65
Identities = 196/504 (38%), Positives = 231/504 (45%), Gaps = 176/504 (34%)
Query: 1 MSTTLLSA-FYDV-DFLCKTEKSLANLNLNN----MLDKKAVGTPVAAAPSSGFAPGFLR 54
M+TTL+SA +D+ + LCK K L N + + +LD+KAVGTP GF R
Sbjct: 1 MTTTLVSATIFDLSEVLCKGNKML-NYSAPSAGGCLLDRKAVGTPAGG--------GFPR 51
Query: 55 RHSASNLHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSGGGGTALLN 114
RHS + + H L G AL +
Sbjct: 52 RHSVTLPSSKFHQNQ------------------------------LLSSLKGEPAPALSS 81
Query: 115 KENKFRDRSFSENGDRSQHLLHLQQQQKGGGGSQINSTRYKTELCRPFEESGTCKYGEKC 174
++++FRDRSFSE G+R L QK GG Q+NS+RYKTELCRPFEE+G CKYG+KC
Sbjct: 82 RDSRFRDRSFSEGGER------LLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKC 135
Query: 175 QFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLR 234
QFAHG HELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA+ERR
Sbjct: 136 QFAHGIHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALA--------- 186
Query: 235 AFGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCS 294
G RD RP+L HS SF+GFPS + LLDSPTS TPPP
Sbjct: 187 --GARDL------SADRPRLQHSFSFAGFPSA----AATAAATGLLDSPTSITPPP---- 230
Query: 295 SASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACS 354
A+DLL G+P +
Sbjct: 231 ------------------------------------------ILSADDLL--GSP----T 242
Query: 355 SASCANNAFAF-GPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPA-- 411
NN FAF EL+SL P GL P
Sbjct: 243 LPDGTNNPFAFSSQELASLFAP------------------------SMGLPGGGSPTTFL 278
Query: 412 -PPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLS 470
P + P +PPSP S LSD ++ YLS SS S S
Sbjct: 279 FRPMSESPHMFDSPPSPQDS------LSD----------------QEGYLSS--SSSSHS 314
Query: 471 GSESPSLDPGRRLPIFSRLSISDD 494
GS+SP+LD RRLPIFSRLSISDD
Sbjct: 315 GSDSPTLDNSRRLPIFSRLSISDD 338
>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
Length = 326
Score = 146 bits (369), Expect = 4e-35
Identities = 83/175 (47%), Positives = 91/175 (52%), Gaps = 28/175 (16%)
Query: 152 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPR 211
+RYKTELCR F ESG C+YG KCQFAHG ELR RHPKYKTELC F+ G CPYG R
Sbjct: 102 SRYKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFYLQGRCPYGSR 161
Query: 212 CHFIHNADERRPAPSGGASGDLRAFGTRDALHLGFPREPRPKLHHSLSFSGFPSGHH--Q 269
CHFIHN E AP G P P L S+SFSG PSG
Sbjct: 162 CHFIHNPSEDLAAP-------------------GHP----PVLRQSISFSGLPSGRRTSP 198
Query: 270 PPGGLESPLLLD---SPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTC 321
PP GL P L SP+S PPP + S S+A A TP P+C
Sbjct: 199 PPPGLAGPSLSSSSFSPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSC 253
Score = 41.2 bits (95), Expect = 0.002
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 29/116 (25%)
Query: 404 APPAQPPAPPSATL-PAGAAAPPSPPFSFQLP--------RRLSDSPVFDA------PPS 448
+P + PP P L P+ +A P P + + P RR + V+ PS
Sbjct: 214 SPSSSPPPPGDLPLSPSAFSAAPGTPLARRDPTPVCCPSCRRATPISVWGPLGGLVRTPS 273
Query: 449 PPDSLSDRDSYLSGSLSSGSLSGSESPSLDPG-----------RRLPIFSRLSISD 493
SD D Y S S SL GS+SP + G RRLPIF+R+S+S+
Sbjct: 274 VQSLGSDPDEYAS---SGSSLGGSDSPVFEAGVFAPPQPVAAPRRLPIFNRISVSE 326
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 55.5 bits (132), Expect = 1e-07
Identities = 83/313 (26%), Positives = 112/313 (35%), Gaps = 51/313 (16%)
Query: 210 PRCHFIHNADERRPAPSGGASGDLRAFGTRDALHLGFPREPRP---KLHHSLS--FSGFP 264
P +F H P P+ LR A G +P P H++ G P
Sbjct: 290 PPANFPHVTPNLPPPPA------LRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLP 343
Query: 265 SGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCAS 324
G + P SP L +S P PP SS SSS+++ SS+S++S+ S +P +
Sbjct: 344 PGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQ 403
Query: 325 AAAAAAAAL-----LYGTGGAEDLLAPGAPCAACSSAS----------CANNAFAFGP-- 367
A + + L + P P A S AN+ GP
Sbjct: 404 ALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHPGPFP 463
Query: 368 ----ELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQ------GLAPPAQPPAP----- 412
S+ P++ H+ + QQQQQQQ G PP P P
Sbjct: 464 PSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGS 523
Query: 413 -----PSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSG 467
P A P+ + P PP LP S A P+ P S +S S S S G
Sbjct: 524 SHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNS--SSSTSQG 581
Query: 468 SLSGSE-SPSLDP 479
S S SPS P
Sbjct: 582 SYPCSHPSPSQGP 594
Score = 43.5 bits (101), Expect = 4e-04
Identities = 66/241 (27%), Positives = 87/241 (36%), Gaps = 34/241 (14%)
Query: 255 HHSLSFSGFPS-GHHQP----PGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASS---- 305
HH+ ++ PS G +P P L P S + P P SS+S+ SSS S
Sbjct: 525 HHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYP 584
Query: 306 CSSASAASTPSGAP---------TCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSA 356
CS S + P GAP T ++ + A + G + PG P +
Sbjct: 585 CSHPSPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAP 644
Query: 357 SCANNAFAFGPELS-----SLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPA 411
S A P S T + A ++ G PPA P
Sbjct: 645 SPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSG 704
Query: 412 PPSATLPAGAAAPPS-PPFSF----QLPRRLSDSPVFDAP----PSPPDSLSDRDSYLSG 462
PS LP AAP S PP S Q P ++P P PSPP + D S+ S
Sbjct: 705 LPS--LPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVDVPSHASQ 762
Query: 463 S 463
S
Sbjct: 763 S 763
Score = 31.6 bits (70), Expect = 1.7
Identities = 60/256 (23%), Positives = 87/256 (33%), Gaps = 56/256 (21%)
Query: 247 PREPRPKLHHSLSFSGFPSGHHQPPGGLESPL--LLDSPTSRTPPPPSCSSA------SS 298
PR+P S + P+G+H P +E P + +P PP P S
Sbjct: 176 PRQPEASFEPHPSVT--PTGYHAP---MEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSG 230
Query: 299 CSSSASSCSSASAASTPSGA-----PTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAAC 353
+AS+ P+G PT S +++ G GA P P
Sbjct: 231 PPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSS-------GASGAPPTKPPTTPVGGG 283
Query: 354 SSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQ----------QQQQQQGL 403
+ S A F +L P A++ N A+ + Q GL
Sbjct: 284 NLPSAPPPA-NFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGL 342
Query: 404 AP-PAQPP--APPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYL 460
P P + P AP +LP +++ P+PP F P S S +
Sbjct: 343 PPGPEKGPTLAPSPHSLPPASSSAPAPPMRF-----------------PYSSSSSSSAAA 385
Query: 461 SGSLSSGSLSGSESPS 476
S S SS S S S P+
Sbjct: 386 SSSSSSSSSSASPFPA 401
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 55.5 bits (132), Expect = 1e-07
Identities = 83/313 (26%), Positives = 112/313 (35%), Gaps = 51/313 (16%)
Query: 210 PRCHFIHNADERRPAPSGGASGDLRAFGTRDALHLGFPREPRP---KLHHSLS--FSGFP 264
P +F H P P+ LR A G +P P H++ G P
Sbjct: 290 PPANFPHVTPNLPPPPA------LRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGLP 343
Query: 265 SGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCAS 324
G + P SP L +S P PP SS SSS+++ SS+S++S+ S +P +
Sbjct: 344 PGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQ 403
Query: 325 AAAAAAAAL-----LYGTGGAEDLLAPGAPCAACSSAS----------CANNAFAFGP-- 367
A + + L + P P A S AN+ GP
Sbjct: 404 ALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHPGPFP 463
Query: 368 ----ELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQ------GLAPPAQPPAP----- 412
S+ P++ H+ + QQQQQQQ G PP P P
Sbjct: 464 PSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGS 523
Query: 413 -----PSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSG 467
P A P+ + P PP LP S A P+ P S +S S S S G
Sbjct: 524 SHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNS--SSSTSQG 581
Query: 468 SLSGSE-SPSLDP 479
S S SPS P
Sbjct: 582 SYPCSHPSPSQGP 594
Score = 43.5 bits (101), Expect = 4e-04
Identities = 66/241 (27%), Positives = 87/241 (36%), Gaps = 34/241 (14%)
Query: 255 HHSLSFSGFPS-GHHQP----PGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASS---- 305
HH+ ++ PS G +P P L P S + P P SS+S+ SSS S
Sbjct: 525 HHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYP 584
Query: 306 CSSASAASTPSGAP---------TCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSA 356
CS S + P GAP T ++ + A + G + PG P +
Sbjct: 585 CSHPSPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAP 644
Query: 357 SCANNAFAFGPELS-----SLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPA 411
S A P S T + A ++ G PPA P
Sbjct: 645 SPGAYKTATPPGYKPGSPPSFRTGTPPGYRGTSPPAGPGTFKPGSPTVGPGPLPPAGPSG 704
Query: 412 PPSATLPAGAAAPPS-PPFSF----QLPRRLSDSPVFDAP----PSPPDSLSDRDSYLSG 462
PS LP AAP S PP S Q P ++P P PSPP + D S+ S
Sbjct: 705 LPS--LPPPPAAPASGPPLSATQIKQEPAEEYETPESPVPPARSPSPPPKVVDVPSHASQ 762
Query: 463 S 463
S
Sbjct: 763 S 763
Score = 31.6 bits (70), Expect = 1.7
Identities = 60/256 (23%), Positives = 87/256 (33%), Gaps = 56/256 (21%)
Query: 247 PREPRPKLHHSLSFSGFPSGHHQPPGGLESPL--LLDSPTSRTPPPPSCSSA------SS 298
PR+P S + P+G+H P +E P + +P PP P S
Sbjct: 176 PRQPEASFEPHPSVT--PTGYHAP---MEPPTSRMFQAPPGAPPPHPQLYPGGTGGVLSG 230
Query: 299 CSSSASSCSSASAASTPSGA-----PTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAAC 353
+AS+ P+G PT S +++ G GA P P
Sbjct: 231 PPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSS-------GASGAPPTKPPTTPVGGG 283
Query: 354 SSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQ----------QQQQQQGL 403
+ S A F +L P A++ N A+ + Q GL
Sbjct: 284 NLPSAPPPA-NFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGL 342
Query: 404 AP-PAQPP--APPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYL 460
P P + P AP +LP +++ P+PP F P S S +
Sbjct: 343 PPGPEKGPTLAPSPHSLPPASSSAPAPPMRF-----------------PYSSSSSSSAAA 385
Query: 461 SGSLSSGSLSGSESPS 476
S S SS S S S P+
Sbjct: 386 SSSSSSSSSSASPFPA 401
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 55.1 bits (131), Expect = 1e-07
Identities = 66/241 (27%), Positives = 90/241 (37%), Gaps = 27/241 (11%)
Query: 214 FIHNADERRPAPSGGASGDLRAFGTRDALHLGFPREPRPKLHHS---LSFSGFPSGHHQP 270
F+ D AP+ G G G P+ P P H + +S SG +G
Sbjct: 197 FVLRRDLSATAPAAAMHG--APLGGEQRSGTGSPQHPAPPPHSAGMFISASGTYAGPDGS 254
Query: 271 PGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSAS---AASTPSGAPTCCAS--- 324
G P L D+P + P + +A++ ++A+ + P AP +
Sbjct: 255 GGPALFPALHDTPGAPGGHPHPLNGQMRLGLAAAAAAAAAELYGRAEPPFAPRSGDAHYG 314
Query: 325 AAAAAAAALLYGTGGAE---DLLAPGAPCAACSSASCANNAFAFGPELSSLITPLAIQTH 381
A AAAAAA L+G G +L A A AA ++A P Q H
Sbjct: 315 AVAAAAAAALHGYGAVNLNLNLAAAAAAAAAGPGPHLQHHAPPPAPPPPPAPAQHPHQHH 374
Query: 382 NFAAVAAAAYYRSQQQQQQQ-------------GLAPPAQPPAPPSATLPAGAAAPPSPP 428
AA A+ R +Q +Q GL PP PP PP PAG A P S
Sbjct: 375 PHLPGAAGAFLRYMRQPIKQELICKWIDPDELAGLPPPPPPPPPPPPPPPAGGAKPCSKT 434
Query: 429 F 429
F
Sbjct: 435 F 435
Score = 33.5 bits (75), Expect = 0.46
Identities = 56/215 (26%), Positives = 78/215 (36%), Gaps = 41/215 (19%)
Query: 266 GHHQPPGGLESP---LLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCC 322
G+ PP + P +L++ P S+ PP + A ++ + + +G P
Sbjct: 8 GNKVPPVRVYGPDCVVLMEPPLSKRNPP-ALRLADLATAQVQPLQNMTGFPALAGPPA-- 64
Query: 323 ASAAAAAAAALLYGTGGAEDLLA--PGAP----CAACSSASCANNAFAFGPELSSLITPL 376
S AA A L GA+ +A P P A+ S + AF PE +
Sbjct: 65 HSQLRAAVAHLRLRDLGADPGVATTPLGPEHMAQASTLGLSPPSQAFPAHPEAPAAAARA 124
Query: 377 AIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRR 436
A A A +Y Q APP PPAPP P+ PP PP
Sbjct: 125 AALV---AHPGAGSYPCGGGSSGAQPSAPP--PPAPPLPPTPS----PPPPP-------- 167
Query: 437 LSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSG 471
PP PP +LS Y + + G SG
Sbjct: 168 ---------PPPPPPALS---GYTTTNSGGGGSSG 190
Score = 30.8 bits (68), Expect = 3.0
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 41 AAAPSSGFAPGFLRRHSASNLHALAHPAPSPGSCSPKFPGAANGSSCGSAAAGGPTSYGT 100
A AP++ L S + HPAP P S +A+G+ G +GGP +
Sbjct: 205 ATAPAAAMHGAPLGGEQRSGTGSPQHPAPPPHSAGMFI--SASGTYAGPDGSGGPALFPA 262
Query: 101 LKEPSGGGG 109
L + G G
Sbjct: 263 LHDTPGAPG 271
>gi|19111150 angiomotin isoform 2 [Homo sapiens]
Length = 675
Score = 54.7 bits (130), Expect = 2e-07
Identities = 61/204 (29%), Positives = 85/204 (41%), Gaps = 26/204 (12%)
Query: 283 PTSRTPPPPSCSSASSCSSSAS-SCSSAS---------AASTPSGAPTCCASAAAAAAAA 332
P++ +P PPS S+ S + S CS+ + AA P P A+AA AAA
Sbjct: 429 PSTPSPVPPSTPLLSAHSKTGSRDCSTQTERGTESNKTAAVAPISVPAPVAAAATAAAIT 488
Query: 333 LLYGT-------GGAEDLLAPGAPCAAC--SSASCANNAFAFGPELSSLITPLAIQTHNF 383
T + A AP AA S A+ A A A P + I P A +
Sbjct: 489 ATAATITTTMVAAAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQI-PAAASVASA 547
Query: 384 AAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVF 443
AAVA +A + Q A PA PAP +PA AAA S P Q P + +P
Sbjct: 548 AAVAPSA---AAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAP---TSAPAV 601
Query: 444 DAPPSPPDSLSDRDSYLSGSLSSG 467
P+P + + + + S ++G
Sbjct: 602 APTPAPTPTPAVAQAEVPASPATG 625
Score = 44.7 bits (104), Expect = 2e-04
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 282 SPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAA---------AAA 332
+P S P + ++A++ +++A++ ++ A+ P A AAAAA AAA
Sbjct: 470 APISVPAPVAAAATAAAITATAATITTTMVAAAPVAVAAAAAPAAAAAPSPATAAATAAA 529
Query: 333 LLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPELSSLI-TPLAIQTHNFAAVAAAAY 391
+ G A A AA + ++ A A P + + P + AA A+A
Sbjct: 530 VSPAAAGQIPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAP 589
Query: 392 YRSQQQQQQQGLAPPAQP---PAPPSATLPAGAAAPPSP 427
++Q +AP P PA A +PA A P P
Sbjct: 590 AQTQAPTSAPAVAPTPAPTPTPAVAQAEVPASPATGPGP 628
>gi|166064029 angiomotin isoform 1 [Homo sapiens]
Length = 1084
Score = 54.7 bits (130), Expect = 2e-07
Identities = 61/204 (29%), Positives = 85/204 (41%), Gaps = 26/204 (12%)
Query: 283 PTSRTPPPPSCSSASSCSSSAS-SCSSAS---------AASTPSGAPTCCASAAAAAAAA 332
P++ +P PPS S+ S + S CS+ + AA P P A+AA AAA
Sbjct: 838 PSTPSPVPPSTPLLSAHSKTGSRDCSTQTERGTESNKTAAVAPISVPAPVAAAATAAAIT 897
Query: 333 LLYGT-------GGAEDLLAPGAPCAAC--SSASCANNAFAFGPELSSLITPLAIQTHNF 383
T + A AP AA S A+ A A A P + I P A +
Sbjct: 898 ATAATITTTMVAAAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQI-PAAASVASA 956
Query: 384 AAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVF 443
AAVA +A + Q A PA PAP +PA AAA S P Q P + +P
Sbjct: 957 AAVAPSA---AAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAP---TSAPAV 1010
Query: 444 DAPPSPPDSLSDRDSYLSGSLSSG 467
P+P + + + + S ++G
Sbjct: 1011 APTPAPTPTPAVAQAEVPASPATG 1034
Score = 44.7 bits (104), Expect = 2e-04
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 282 SPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAA---------AAA 332
+P S P + ++A++ +++A++ ++ A+ P A AAAAA AAA
Sbjct: 879 APISVPAPVAAAATAAAITATAATITTTMVAAAPVAVAAAAAPAAAAAPSPATAAATAAA 938
Query: 333 LLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPELSSLI-TPLAIQTHNFAAVAAAAY 391
+ G A A AA + ++ A A P + + P + AA A+A
Sbjct: 939 VSPAAAGQIPAAASVASAAAVAPSAAAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAP 998
Query: 392 YRSQQQQQQQGLAPPAQP---PAPPSATLPAGAAAPPSP 427
++Q +AP P PA A +PA A P P
Sbjct: 999 AQTQAPTSAPAVAPTPAPTPTPAVAQAEVPASPATGPGP 1037
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 54.3 bits (129), Expect = 2e-07
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
Query: 282 SPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAE 341
SP S + S SS+SS SSS+SS SS+S++S+ S + + +S++++++++ + +
Sbjct: 2611 SPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670
Query: 342 DLLAPGAPCAACSSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQ 401
+ C++ A+ A A GP + + A T +A+ ++ Q
Sbjct: 2671 STTDEDSSCSSDDEAAPAPTA---GPSAQAALPTKA--TKQAGKARPSAHSPGKKTPAPQ 2725
Query: 402 GLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLP 434
APP QP P AGA + P LP
Sbjct: 2726 PQAPPPQPTQPLQPKAQAGAKSRPKKREGVHLP 2758
Score = 45.1 bits (105), Expect = 2e-04
Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 27/226 (11%)
Query: 247 PREPRPKLHHS-LSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASS 305
P+ P PK L+ P + G +SP + S SS+SS SSS+SS
Sbjct: 2513 PKAPWPKATDGDLAQEPGPGLTFEDSGNPKSPDKAQAEQDGAEESESSSSSSSGSSSSSS 2572
Query: 306 CSSASAASTP--------------SGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCA 351
SS+S + T +G C A+++ AA+ A + + + + +
Sbjct: 2573 SSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSS 2632
Query: 352 ACSSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYY---RSQQQQQQQGLAPPAQ 408
+ SS+S ++++ + SS + + + + ++ ++++ S + AP A
Sbjct: 2633 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAG 2692
Query: 409 PPA----PPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPP 450
P A P AT AG A P S P + + +P APP P
Sbjct: 2693 PSAQAALPTKATKQAGKARP-----SAHSPGKKTPAPQPQAPPPQP 2733
Score = 30.4 bits (67), Expect = 3.9
Identities = 37/140 (26%), Positives = 49/140 (35%), Gaps = 13/140 (9%)
Query: 33 KKAVGTPVAAAPSSGFAPGFLRRHSASNLHALAHPAPSPGSCSPKFPGAANGSSCGSAAA 92
KKA P A P S G +++H+ AH + + +GS A A
Sbjct: 548 KKAYLDPGAVLPRSAATCG----RPVADMHSAAHGSGEASAMQSLIK--YSGSFARDAVA 601
Query: 93 GGPTSYGTLKEPSGGGGTALLNKENKFRDRSFSENGDRSQHLLHLQQQQKGGGGSQINST 152
P G K P GG GT K S R+Q L GGG Q+
Sbjct: 602 VRPGGCGK-KSPFGGLGTM------KPEPAPTSAGASRAQARLPHSGGPAAGGGRQLKRD 654
Query: 153 RYKTELCRPFEESGTCKYGE 172
+ E + F G+ GE
Sbjct: 655 PERPESAKAFGREGSGAQGE 674
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 52.4 bits (124), Expect = 9e-07
Identities = 83/292 (28%), Positives = 105/292 (35%), Gaps = 44/292 (15%)
Query: 218 ADERRPAPSGGASGDLRAFGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQP-PGGLES 276
A RRP+ GG + A L P P + PS QP P GL++
Sbjct: 214 AARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPS---QPKPKGLQA 270
Query: 277 PLLLDSPTSRTPPPPSCSSA-SSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLY 335
P TPP + A SSS + S SA +PS P+ + A
Sbjct: 271 L----RPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQA 326
Query: 336 GTG-GAEDLLA-----------------PGAPCAACSSASCANNAFAFGPELSSLITPLA 377
T G+ L A P AP A A + P LS L TP +
Sbjct: 327 TTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATP-S 385
Query: 378 IQTHNFAAV--AAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGA---------AAPPS 426
Q N AV A + Q +PPA PP PSAT P+ A PPS
Sbjct: 386 PQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPS 445
Query: 427 PPFSFQLPRRLSDSPVFDAPP---SPPDSLSDRDSYLSGSLSSGSLSGSESP 475
PP S P S +P APP +PP L+ +L++ L SP
Sbjct: 446 PPAS--PPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSP 495
Score = 38.5 bits (88), Expect = 0.014
Identities = 61/203 (30%), Positives = 77/203 (37%), Gaps = 31/203 (15%)
Query: 250 PRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSA 309
P P LS PS Q P L + LL +P S P PP + S +S S S
Sbjct: 370 PSPPASPPLSPLATPSP--QAPNAL-AVHLLQAPFSPPPSPPVQAPFSPPASPPVSPS-- 424
Query: 310 SAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPEL 369
A+ PS AP A A L P +P A+ + A P L
Sbjct: 425 --ATPPSQAPPSLA----------------APPLQVPPSPPASPPMSPSATPPPQAPPPL 466
Query: 370 SSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPF 429
++ PL + A A A Q + P Q P PSA+LP A P P
Sbjct: 467 AA--PPLQLAKPPPQAPPALATPPLQALPSPPA-SFPGQAPFSPSASLPMSPLATPPP-- 521
Query: 430 SFQLPRRLSDSPVFDAPPSPPDS 452
Q P L+ +P+ PPSPP S
Sbjct: 522 --QAPPVLA-APLLQVPPSPPAS 541
Score = 35.4 bits (80), Expect = 0.12
Identities = 70/245 (28%), Positives = 87/245 (35%), Gaps = 32/245 (13%)
Query: 247 PREPRPKLHHSLS--FSGFPSGHHQPP-GGLESPLLLDSPTSRTPPPPSCSSAS---SCS 300
P+ P H L FS PS Q P SP + S T + PPS ++ S
Sbjct: 386 PQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPS 445
Query: 301 SSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCAN 360
AS S SA P P A A L P AS
Sbjct: 446 PPASPPMSPSATPPPQAPPPLAAPPLQLAKPP----PQAPPALATPPLQALPSPPASFPG 501
Query: 361 NAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSA-TLPA 419
A F P S ++PLA V AA + PP+PP++ TL A
Sbjct: 502 QA-PFSPSASLPMSPLATPPPQAPPVLAAPLLQV--------------PPSPPASPTLQA 546
Query: 420 GAAAP-PSPPFSFQLPR-RLSDSPVFDAPP--SPPDSLSDRDSYLSGSLSSGSLSGSESP 475
P P P S PR L+ +P PP SP +LS D L+G SS + + E
Sbjct: 547 PRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPD--LAGHSSSATSTPEELR 604
Query: 476 SLDPG 480
D G
Sbjct: 605 GYDSG 609
Score = 35.4 bits (80), Expect = 0.12
Identities = 57/225 (25%), Positives = 79/225 (35%), Gaps = 27/225 (12%)
Query: 270 PPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAA 329
P + P L + PPPPS S +S+ S + S+SA STP + A
Sbjct: 555 PDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGA 614
Query: 330 AAALLYGTGGAEDLLAPGAPCAACSSASCANN-----AFAFGPELSSLITPLAIQTHNFA 384
AA+ P A AAC A+ + AF P P T +
Sbjct: 615 AAS-----------PPPDAELAACHPAAWSRGPAPPLAFRGAP---GAPLPWPPATGPGS 660
Query: 385 AVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPR--RLSDSPV 442
A Y ++ + AP A P P T AAA S + P+ RL + P+
Sbjct: 661 ADGLCTIYETEGPESATP-APGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPL 719
Query: 443 FDAPPSPPDSLSDRDSYLSGSL-----SSGSLSGSESPSLDPGRR 482
S L R L+ + S G G+E + G R
Sbjct: 720 GALQASVVQHLLSRTLLLAAAEGAAGGSGGGPGGAEGGGVTGGAR 764
Score = 30.0 bits (66), Expect = 5.0
Identities = 66/266 (24%), Positives = 85/266 (31%), Gaps = 68/266 (25%)
Query: 270 PPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAA 329
PP P L P+ PP S A++ S + ++ S +P +P A
Sbjct: 303 PPSPSAPPSLQTLPSPPATPP---SQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPP 359
Query: 330 AAALLYGTGGAEDLLAPGAPCAA------CSSASCANNAFA------------------- 364
A AL L AP +P A+ + + A NA A
Sbjct: 360 ALAL-------PPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAP 412
Query: 365 FGPELSSLITPLAIQTHNFAAVAAAAYYR------SQQQQQQQGLAPPAQPP-------- 410
F P S ++P A AA + + PP PP
Sbjct: 413 FSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQ 472
Query: 411 --APPSATLPAGAAAP----PSPPFSF--QLP----RRLSDSPVFDAPPSPPDSLSDRDS 458
PP PA A P PSPP SF Q P L SP+ PP P
Sbjct: 473 LAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAP-------P 525
Query: 459 YLSGSLSSGSLSGSESPSLDPGRRLP 484
L+ L S SP+L RR P
Sbjct: 526 VLAAPLLQVPPSPPASPTLQAPRRPP 551
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 52.4 bits (124), Expect = 9e-07
Identities = 54/207 (26%), Positives = 93/207 (44%), Gaps = 21/207 (10%)
Query: 292 SCSSASSCSSSASSCSSASAASTPSGAPTCCASAAA------AAAAALLYGTGGAEDLLA 345
S SS+SS SSS+SS SS+S++S+ SG+ + + ++ A + T ++ +
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVR 2591
Query: 346 PGAP----------CAACSSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQ 395
G P ++ SS+S ++++ + SS + + + + ++ ++++ S
Sbjct: 2592 EGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSP 2651
Query: 396 QQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSD 455
+ Q L PA P PP + +P P S + R LS SPV PSP S D
Sbjct: 2652 AKPGPQALPKPASPKKPPPG--ERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRD 2709
Query: 456 RDSYLSGSLSSGSLSGSESPSLDPGRR 482
+ S S GS G S P +
Sbjct: 2710 QQ---SSSSERGSRRGQRGDSRSPSHK 2733
Score = 44.3 bits (103), Expect = 3e-04
Identities = 65/269 (24%), Positives = 90/269 (33%), Gaps = 48/269 (17%)
Query: 264 PSGHHQPPGGLESPLLLDSPTSRTPP-----------------------------PPSCS 294
P ++ G SP LLD SRTPP PP+
Sbjct: 2386 PLSAYERVSGRTSPPLLDRARSRTPPSAPSQSRMTSERAPSPSSRMGQAPSQSLLPPAQD 2445
Query: 295 SASSCSSSASSCSSAS--AASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCA- 351
S SA S S A +TP +S A A + G + APG P +
Sbjct: 2446 QPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSD 2505
Query: 352 -----ACSSASCANNAFAFGP----ELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQG 402
A + A + A P SS + + + + ++ ++++ +G
Sbjct: 2506 VGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEG 2565
Query: 403 LAPPAQP-------PAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSD 455
+ P QP P+P A A P P + RR S S + S S S
Sbjct: 2566 SSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSS 2625
Query: 456 RDSYLSGSLSSGSLSGSESPSLDPGRRLP 484
S S S SS S S S S S P P
Sbjct: 2626 SSSSSSSSSSSSSSSSSSSSSSSPSPAKP 2654
Score = 42.4 bits (98), Expect = 0.001
Identities = 70/286 (24%), Positives = 113/286 (39%), Gaps = 32/286 (11%)
Query: 222 RPAPSGGASGDLRAFGTRDALHLGFPREPRPKLHHSLSFSGFPSG----HHQPPGGLESP 277
R AP+ + + A + A++L R P +L+ S P+ + P +P
Sbjct: 2221 RTAPAANLASRIPA-ASAAAMNLASARTPAIPTAVNLADSRTPAAAAAMNLASPRTAVAP 2279
Query: 278 LLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAA--AAAAALLY 335
++ RTP P+ + A + + +A + S + + TP A +S+ A A+A L
Sbjct: 2280 SAVNLADPRTPTAPAVNLAGARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPASANLV 2339
Query: 336 GTGGAEDL----LAPGAPCAACSSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAY 391
G A +A AA + AS + A ++L +P V +AY
Sbjct: 2340 GPRSAHATAPVNIAGSRTAAALAPASLTSARMAPALSGANLTSP---------RVPLSAY 2390
Query: 392 YRSQQQQQQQGL--APPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSP 449
R + L A PP+ PS + AP Q P + P D P SP
Sbjct: 2391 ERVSGRTSPPLLDRARSRTPPSAPSQSRMTSERAPSPSSRMGQAPSQSLLPPAQDQPRSP 2450
Query: 450 -PDSLSDRDSYL---------SGSLSSGSLSGSESPSLDPGRRLPI 485
P + SD+ L S SLSSG+++ + S + D L +
Sbjct: 2451 VPSAFSDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSV 2496
Score = 36.6 bits (83), Expect = 0.054
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 239 RDALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASS 298
++A+ G P EP P S S S S +S + S SS+SS
Sbjct: 2587 KEAVREGRPPEPTPAKRKRRSSSSSSSS--------------SSSSSSSSSSSSSSSSSS 2632
Query: 299 CSSSASSCSSASAASTPSGA 318
SSS+SS SS+S++S+PS A
Sbjct: 2633 SSSSSSSSSSSSSSSSPSPA 2652
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 52.4 bits (124), Expect = 9e-07
Identities = 54/182 (29%), Positives = 69/182 (37%), Gaps = 35/182 (19%)
Query: 155 KTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHF 214
K E+C F + G C G KC+ H T LC F G CP G +C
Sbjct: 752 KAEVCSDFLK-GYCPLGAKCKKKH---------------TLLCPDFARRGACPRGAQCQL 795
Query: 215 IHNADER--RPAPSGGASGDLRAFGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQPPG 272
+H +R R A + A G A PR+P S +P
Sbjct: 796 LHRTQKRHSRRAATSPAPGPSDATARSRVSASHGPRKP--------------SASQRPTR 841
Query: 273 GLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASA---ASTPSGAPTCCASAAAAA 329
S L + PP SAS SS ASS SS+S+ AS AP+ +A AAA
Sbjct: 842 QTPSSAALTAAAVAAPPHCPGGSASPSSSKASSSSSSSSSPPASLDHEAPSLQEAALAAA 901
Query: 330 AA 331
+
Sbjct: 902 CS 903
Score = 48.5 bits (114), Expect = 1e-05
Identities = 100/409 (24%), Positives = 140/409 (34%), Gaps = 47/409 (11%)
Query: 33 KKAVGTPVAAAPSSGFAPGF-LRRHSASNLHALAHPAPSPGSCSPKFPGAANGSSCGSAA 91
KK +P++A P P + RR S S L P PG+ S G
Sbjct: 544 KKTPASPLSAPPFPLSLPSWRARRLSLSRSLVLNRLRPVASGGGKAQPGSPWWRSKGYRC 603
Query: 92 AGG---PTSYGTLKEPSGGGGTALLNKENKFRDRSFSENGDRSQHLLHLQQQQKGGGGSQ 148
GG S L + SG A R G S+ L Q+ Q
Sbjct: 604 IGGVLYKVSANKLSKTSGQPSDA--GSRPLLRTGRLDPAGSCSRSLASRAVQRSLAIIRQ 661
Query: 149 INSTRYKT-ELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCP 207
R K E C + G C GE+C + H ++ TR + C+ T G CP
Sbjct: 662 ARQRREKRKEYCMYYNRFGRCNRGERCPYIHDPEKVAVCTR---FVRGTCKK--TDGTCP 716
Query: 208 YG--------PRC-HFIHNADERRPAPSGGASGDLRAFGTRDALHLGFPREPRPKLHHSL 258
+ P C +F+ P +A D L P + K H+L
Sbjct: 717 FSHHVSKEKMPVCSYFLKGICSNSNCPYSHVYVSRKAEVCSDFLKGYCPLGAKCKKKHTL 776
Query: 259 SFSGFPSGHHQPPGG----LESPLLLDSPTSRTPPPPSCSSASSCS--SSASSCSSASAA 312
F P G L S + T P P S A++ S S++ SA+
Sbjct: 777 LCPDFARRGACPRGAQCQLLHRTQKRHSRRAATSPAPGPSDATARSRVSASHGPRKPSAS 836
Query: 313 STPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPELSSL 372
P+ A+ AAA AA + GG+ +P + A+ SS+S ++ + E SL
Sbjct: 837 QRPTRQTPSSAALTAAAVAAPPHCPGGS---ASPSSSKASSSSSSSSSPPASLDHEAPSL 893
Query: 373 ITPLAIQTHNFAAVAAAAYYR--------SQQQQQQQGLAPPAQPPAPP 413
AA+AAA R S Q G P + P P
Sbjct: 894 ---------QEAALAAACSNRLCKLPSFISLQSSPSPGAQPRVRAPRAP 933
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 51.2 bits (121), Expect = 2e-06
Identities = 65/223 (29%), Positives = 87/223 (39%), Gaps = 43/223 (19%)
Query: 274 LESPLLLDSPTSRTPP-------PPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAA 326
L +PL L P+ PP PP+ + + +S S A+ + PS + A+
Sbjct: 334 LATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPP 393
Query: 327 AAAAAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPELSSLITPLAIQTHNFAAV 386
A AL L AP +P A+ P LS L TP + Q N AV
Sbjct: 394 PQAPPAL-----ALPPLQAPPSPPAS--------------PPLSPLATP-SPQAPNALAV 433
Query: 387 --AAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGA---------AAPPSPPFSFQLPR 435
A + Q +PPA PP PSAT P+ A PPSPP S P
Sbjct: 434 HLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPAS--PPM 491
Query: 436 RLSDSPVFDAPP---SPPDSLSDRDSYLSGSLSSGSLSGSESP 475
S +P APP +PP L+ +L++ L SP
Sbjct: 492 SPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSP 534
Score = 38.5 bits (88), Expect = 0.014
Identities = 61/203 (30%), Positives = 77/203 (37%), Gaps = 31/203 (15%)
Query: 250 PRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSA 309
P P LS PS Q P L + LL +P S P PP + S +S S S
Sbjct: 409 PSPPASPPLSPLATPSP--QAPNAL-AVHLLQAPFSPPPSPPVQAPFSPPASPPVSPS-- 463
Query: 310 SAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPEL 369
A+ PS AP A A L P +P A+ + A P L
Sbjct: 464 --ATPPSQAPPSLA----------------APPLQVPPSPPASPPMSPSATPPPQAPPPL 505
Query: 370 SSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPF 429
++ PL + A A A Q + P Q P PSA+LP A P P
Sbjct: 506 AA--PPLQLAKPPPQAPPALATPPLQALPSPPA-SFPGQAPFSPSASLPMSPLATPPP-- 560
Query: 430 SFQLPRRLSDSPVFDAPPSPPDS 452
Q P L+ +P+ PPSPP S
Sbjct: 561 --QAPPVLA-APLLQVPPSPPAS 580
Score = 36.6 bits (83), Expect = 0.054
Identities = 67/245 (27%), Positives = 85/245 (34%), Gaps = 38/245 (15%)
Query: 242 LHLGFPREPRPKLHHSLSFSGFP--SGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSC 299
L F P P + S P S PP ++P L +P + PP P S S
Sbjct: 436 LQAPFSPPPSPPVQAPFSPPASPPVSPSATPPS--QAPPSLAAPPLQVPPSPPASPPMSP 493
Query: 300 SSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCA 359
S++ + A+ P A A A L P P + A
Sbjct: 494 SATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQA--------LPSPPASFPGQA--- 542
Query: 360 NNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPA 419
F P S ++PLA V AA L P PPA P TL A
Sbjct: 543 ----PFSPSASLPMSPLATPPPQAPPVLAAPL-----------LQVPPSPPASP--TLQA 585
Query: 420 GAAAP-PSPPFSFQLPR-RLSDSPVFDAPP--SPPDSLSDRDSYLSGSLSSGSLSGSESP 475
P P P S PR L+ +P PP SP +LS D L+G SS + + E
Sbjct: 586 PRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPD--LAGHSSSATSTPEELR 643
Query: 476 SLDPG 480
D G
Sbjct: 644 GYDSG 648
Score = 35.4 bits (80), Expect = 0.12
Identities = 57/225 (25%), Positives = 79/225 (35%), Gaps = 27/225 (12%)
Query: 270 PPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAA 329
P + P L + PPPPS S +S+ S + S+SA STP + A
Sbjct: 594 PDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGA 653
Query: 330 AAALLYGTGGAEDLLAPGAPCAACSSASCANN-----AFAFGPELSSLITPLAIQTHNFA 384
AA+ P A AAC A+ + AF P P T +
Sbjct: 654 AAS-----------PPPDAELAACHPAAWSRGPAPPLAFRGAP---GAPLPWPPATGPGS 699
Query: 385 AVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPR--RLSDSPV 442
A Y ++ + AP A P P T AAA S + P+ RL + P+
Sbjct: 700 ADGLCTIYETEGPESATP-APGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPL 758
Query: 443 FDAPPSPPDSLSDRDSYLSGSL-----SSGSLSGSESPSLDPGRR 482
S L R L+ + S G G+E + G R
Sbjct: 759 GALQASVVQHLLSRTLLLAAAEGAAGGSGGGPGGAEGGGVTGGAR 803
Score = 33.9 bits (76), Expect = 0.35
Identities = 71/267 (26%), Positives = 92/267 (34%), Gaps = 62/267 (23%)
Query: 225 PSGGASGDLRAFGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQPPG-GLESPLLLDSP 283
PS + RA GT L PRP PS +PP G + S
Sbjct: 172 PSPAMARRSRAAGTEVGL-------PRPA----------PSARPRPPTEGPRKSVSSASE 214
Query: 284 TSRTPPPPSCSSASSCS------SSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGT 337
S T P P+ S +S S SSA+ S+P+ + A A
Sbjct: 215 HSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKP 274
Query: 338 GGAEDLLAPGAPCAACSSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQ 397
G + L P +A A GP SS PLA + + A
Sbjct: 275 KGLQALRPPQVTPPRKDAAP------ALGPLSSS---PLATPSPSAAL------------ 313
Query: 398 QQQQGLAPPAQPPAPPSATLPAGAAAP-PSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDR 456
Q APP P P S++L A P P P S P L P +PP+ P S +
Sbjct: 314 ---QSQAPPTLPATPHSSSLTCQLATPLPLAPPSPSAPPSLQTLP---SPPATPPSQA-- 365
Query: 457 DSYLSGSLSSGSLSGSE----SPSLDP 479
+ SL S +L + SP L P
Sbjct: 366 ----TTSLGSPTLQATHSFLPSPPLSP 388
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 50.8 bits (120), Expect = 3e-06
Identities = 65/227 (28%), Positives = 81/227 (35%), Gaps = 58/227 (25%)
Query: 264 PSGHHQPPGGLESPLLLDSPTSRTP------PPPSCSSASSCSSSASSCS----SASAAS 313
P+G +P GG P P+ R P PP+ SA SC+ +A+ A+
Sbjct: 91 PAGRARPGGG--GPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAA 148
Query: 314 TPSGAPTCCASAAAAAAAALLYGTG-----------GAEDLLAPGAPCAACSSASCANNA 362
P AP A A AA A G G G PGA SA+ N+
Sbjct: 149 GPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAALLNSH 208
Query: 363 FAFGPELS------SLITPL--------AIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQ 408
A P +S + + PL IQT F AA PPA
Sbjct: 209 HAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAA----------------PPAP 252
Query: 409 P-PAPPSATLPAGAAA----PPSPPFSFQLPRRLSDSPVFDAPPSPP 450
P+PP+A PA AA PP P + P P AP PP
Sbjct: 253 AAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPP 299
Score = 42.4 bits (98), Expect = 0.001
Identities = 55/199 (27%), Positives = 77/199 (38%), Gaps = 20/199 (10%)
Query: 273 GLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAA 332
G +P +P+ P P+ +A+ + + A P+G PT A A AAA
Sbjct: 245 GAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPT-AAPAVPPPAAA 303
Query: 333 LLYGTGGAEDLLAP---------GAPCAACSSASCANNAFAFGPELSSLITPLAIQTHNF 383
G+ GA AP G P ++A+ A A P+ P A QT
Sbjct: 304 QNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAA 363
Query: 384 AAVAAAAYYRSQQQQQQQGLAPPA--QPPAPPSAT-LPAGAAAPPS-----PPFSFQLPR 435
+ A+ A Q L PA PPAP + T LP GAA + P +
Sbjct: 364 SGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGI 423
Query: 436 RLSDSPVFDAP--PSPPDS 452
R + +P AP P PP +
Sbjct: 424 RATLTPTVLAPRLPQPPQN 442
Score = 31.6 bits (70), Expect = 1.7
Identities = 30/85 (35%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
Query: 35 AVGTPVAAAPSSGFAPGFLRRHSASNLHALAHPAPSPGSCSPKFP---GAANGSSCGSA- 90
A P AA P AP L R HPA P + +P P A NG S G+A
Sbjct: 262 APAAPAAAPPPPPPAPATLARPPG-------HPA-GPPTAAPAVPPPAAAQNGGSAGAAP 313
Query: 91 ----AAGGPTSYGTLKEPSGGGGTA 111
AAGGP G +P G A
Sbjct: 314 APAPAAGGPA--GVSGQPGPGAAAA 336
>gi|239745807 PREDICTED: keratin associated protein 4-9 [Homo
sapiens]
Length = 254
Score = 49.7 bits (117), Expect = 6e-06
Identities = 50/152 (32%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 279 LLDSPTSRTPP---PPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLY 335
L+ +P + PP PP+ + A C ++A SAAS + P A AA AA L
Sbjct: 57 LVPAPAAVRPPVAGPPATAPAVVCPAAAGP----SAASLRAANPLAVAPAAVRRPAATLG 112
Query: 336 GTGGAEDLLAPGAPCAACSSAS--CANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYR 393
A A P AA SA+ CA + A P +S + + AA AAA +
Sbjct: 113 AASPAAVAPAAVCPAAASPSAASLCAASPTAAAPAAASPAAAAPLAVNPAAAAPAAACVQ 172
Query: 394 SQQQQQQQGLAPPAQPPAPPSATLPAGAAAPP 425
S + LA AQP + P+A PA A PP
Sbjct: 173 SVAESPATPLA-IAQPVSSPAA--PAPCAVPP 201
Score = 35.8 bits (81), Expect = 0.092
Identities = 38/135 (28%), Positives = 52/135 (38%), Gaps = 28/135 (20%)
Query: 291 PSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPC 350
P+ + ++ ++ + + AA++PS A C AS AAA AA + A LA P
Sbjct: 107 PAATLGAASPAAVAPAAVCPAAASPSAASLCAASPTAAAPAA---ASPAAAAPLAVN-PA 162
Query: 351 AACSSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPP 410
AA +A+C + S TPLAI Q A PA
Sbjct: 163 AAAPAAACVQSV------AESPATPLAI------------------AQPVSSPAAPAPCA 198
Query: 411 APPSATLPAGAAAPP 425
PP A P A P
Sbjct: 199 VPPLAAEPTALAYLP 213
Score = 35.4 bits (80), Expect = 0.12
Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 10/122 (8%)
Query: 276 SPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSA---SAASTPSGAPTCCASAAAAAAAA 332
+PL + R P +++ + + A+ C +A SAAS + +PT A AAA+ AAA
Sbjct: 95 NPLAVAPAAVRRPAATLGAASPAAVAPAAVCPAAASPSAASLCAASPTAAAPAAASPAAA 154
Query: 333 LLYGTGGAEDLLAPGAPCAAC--SSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAA 390
A AP AAC S A A +SS P AA A
Sbjct: 155 APLAVNP-----AAAAPAAACVQSVAESPATPLAIAQPVSSPAAPAPCAVPPLAAEPTAL 209
Query: 391 YY 392
Y
Sbjct: 210 AY 211
Score = 34.3 bits (77), Expect = 0.27
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 273 GLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAA 332
G SP + +P + P S S+AS C++S ++ + A AAS + AP AAAA AAA
Sbjct: 112 GAASPAAV-APAAVCPAAASPSAASLCAASPTAAAPA-AASPAAAAPLAVNPAAAAPAAA 169
Query: 333 LLYGTGG--------AEDLLAPGAPCAACS 354
+ A+ + +P AP A C+
Sbjct: 170 CVQSVAESPATPLAIAQPVSSPAAP-APCA 198
Score = 32.7 bits (73), Expect = 0.78
Identities = 43/167 (25%), Positives = 63/167 (37%), Gaps = 21/167 (12%)
Query: 301 SSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTG-------------GAEDLLAPG 347
++A + AA P+ AP AAA +AA L AP
Sbjct: 18 AAAPAAVRPPAAGPPAAAPAVVYPAAAGPSAASLCAANPLVPAPAAVRPPVAGPPATAPA 77
Query: 348 APCAACSSASCAN----NAFAFGPELSSLITPLA-IQTHNFAAVAAAAYYRSQQQQQQQG 402
C A + S A+ N A P +++ P A + + AAVA AA +
Sbjct: 78 VVCPAAAGPSAASLRAANPLAVAP--AAVRRPAATLGAASPAAVAPAAVCPAAASPSAAS 135
Query: 403 LAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSP 449
L + A P+A PA AAAP + + P V ++P +P
Sbjct: 136 LCAASPTAAAPAAASPA-AAAPLAVNPAAAAPAAACVQSVAESPATP 181
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 49.3 bits (116), Expect = 8e-06
Identities = 61/244 (25%), Positives = 95/244 (38%), Gaps = 39/244 (15%)
Query: 264 PSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCA 323
PS PP ++ P L SP+ + PP P S+ ++S S + + S + +P
Sbjct: 381 PSLQTIPP--IQVPHSLTSPSLQAPPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQTQ 438
Query: 324 SAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPELSSLITPLAIQTHNF 383
++ + + D AP + +S + P +S L +PL I H
Sbjct: 439 ASLTSPSRP----ASTPPDSPPLQAPLSLPASPPLQTS---LSPAVSPLSSPLTI--HPL 489
Query: 384 AAVAAAAYYRSQQQ---------QQQQGLAPPA--QPPA----PPSATLPAGAAAP---- 424
A+++ A + Q + Q LAPP+ PPA PP LP+ A P
Sbjct: 490 QALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQTPPASLTTPPLENLPSLAPPPLQTA 549
Query: 425 ---------PSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESP 475
+PP P + SP+ PP P S++ +L+S L G SP
Sbjct: 550 SAPLTTPHLETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSP 609
Query: 476 SLDP 479
L P
Sbjct: 610 PLSP 613
Score = 41.2 bits (95), Expect = 0.002
Identities = 61/202 (30%), Positives = 71/202 (35%), Gaps = 45/202 (22%)
Query: 270 PPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAA 329
P GL SP L SP + TPPP + + A AS +P P+ A A
Sbjct: 602 PLQGLPSPPL--SPLA-TPPPQAPPXLALPPLQAPPSPPASPPLSPLATPS--PQAPNAL 656
Query: 330 AAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAA 389
A LL P P A F P S ++P A AA
Sbjct: 657 AVHLLQAPFSPP----PSPPVQA-----------PFSPPASPPVSPSATPPSQAPPSLAA 701
Query: 390 AYYRSQQQQQQQGLAPPAQPPAPPSATLPAGA---------AAPPSPPFSFQL------- 433
Q +PPA PP PSAT P A PPSPP S +
Sbjct: 702 P-------PLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPP 754
Query: 434 PR--RLSDSPVFDAPPSPPDSL 453
PR L +P PPSPP SL
Sbjct: 755 PRVPPLLAAPPLQVPPSPPASL 776
Score = 39.7 bits (91), Expect = 0.006
Identities = 81/285 (28%), Positives = 100/285 (35%), Gaps = 63/285 (22%)
Query: 225 PSGGASGDLRAFGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQPPG-GLESPLLLDSP 283
PS + RA GT L PRP PS +PP G + S
Sbjct: 172 PSPAMARRSRAAGTEVGL-------PRPA----------PSARPRPPTEGPRKSVSSASE 214
Query: 284 TSRTPPPPSCSSASSCS------SSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGT 337
S T P P+ S +S S SSA+ S+P+ + A A
Sbjct: 215 HSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKP 274
Query: 338 GGAEDLLAPGAPCAACSSASCANNAFAFGPELSS-LITPLAIQTH--------NFAAVAA 388
G + L P +A A GP SS L TP T N A
Sbjct: 275 KGLQALRPPQVTPPRKDAAP------ALGPLSSSPLATPSPSGTKARPVPPPDNAATPLP 328
Query: 389 AAYYRSQQQQQQQGLAPPAQPPAPPSA-TLPAGAAAPPS--------PPFS--------- 430
A S LAPP+ P APPS TLP+ A PPS PP
Sbjct: 329 ATLPPSPPLATPLPLAPPS-PSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIP 387
Query: 431 -FQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSES 474
Q+P L+ SP APPSP L+ + SL S +L + S
Sbjct: 388 PIQVPHSLT-SPSLQAPPSP---LALSSLQATTSLGSPTLQATHS 428
Score = 39.3 bits (90), Expect = 0.008
Identities = 66/235 (28%), Positives = 86/235 (36%), Gaps = 36/235 (15%)
Query: 250 PRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSA 309
P P LS PS Q P L + LL +P S P PP + S +S S S
Sbjct: 634 PSPPASPPLSPLATPSP--QAPNAL-AVHLLQAPFSPPPSPPVQAPFSPPASPPVSPS-- 688
Query: 310 SAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPEL 369
A+ PS AP A A L P +P A+ + A P L
Sbjct: 689 --ATPPSQAPPSLA----------------APPLQVPPSPPASPPMSPSATPPPQAPPPL 730
Query: 370 SSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPF 429
++ PL + A+ + + APP Q P P A+LP A P P
Sbjct: 731 AA--PPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPP-- 786
Query: 430 SFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPGRRLP 484
Q P L+ +P A PSPP S + + S S S SP P + P
Sbjct: 787 --QAPPALA-TPPLQALPSPPASFPGQAPF------SPSASLPMSPLATPPPQAP 832
Score = 38.9 bits (89), Expect = 0.011
Identities = 69/265 (26%), Positives = 93/265 (35%), Gaps = 34/265 (12%)
Query: 242 LHLGFPREPRPKLHHSLSFSGFP--SGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSC 299
L F P P + S P S PP ++P L +P + PP P S S
Sbjct: 661 LQAPFSPPPSPPVQAPFSPPASPPVSPSATPPS--QAPPSLAAPPLQVPPSPPASPPMSP 718
Query: 300 SSS----ASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSS 355
S++ A +A P P + +A + A L P +P A+
Sbjct: 719 SATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPM 778
Query: 356 ASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSA 415
+ A P L++ PL A+ A + LA P P APP
Sbjct: 779 SPLAKPPPQAPPALAT--PPLQALPSPPASFPGQAPFSPSASLPMSPLATP-PPQAPPVL 835
Query: 416 TLPAGAAAPPSPPFS--FQLPRR----------------LSDSPVFDAPP--SPPDSLSD 455
P PPSPP S Q PRR L+ +P PP SP +LS
Sbjct: 836 AAPL-LQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSG 894
Query: 456 RDSYLSGSLSSGSLSGSESPSLDPG 480
D L+G SS + + E D G
Sbjct: 895 PD--LAGHSSSATSTPEELRGYDSG 917
Score = 35.8 bits (81), Expect = 0.092
Identities = 56/224 (25%), Positives = 82/224 (36%), Gaps = 22/224 (9%)
Query: 273 GLESPLLLDSPTSRTPPPP-----SCSSASSCSSSASSCSSASAASTPSG----APTCCA 323
G E L +P++R PP S SSAS S++ S ++ S G A +
Sbjct: 184 GTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLS 243
Query: 324 SAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPELSSLITPLAIQTHNF 383
S+A ++ G AP P A P L + +
Sbjct: 244 SSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSP 303
Query: 384 AAVAAAAYYRSQQQQQQQGLAPPAQ---PPAPPSAT-LPAGAAAPPSPPFSFQLPRRLSD 439
A + + +++ A P PP+PP AT LP +P +PP LP +
Sbjct: 304 LATPSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPA- 362
Query: 440 SPVFDAPPS--------PPDSLSDRDSYLSGSLSSGSLSGSESP 475
+P APPS PP + + SL+S SL SP
Sbjct: 363 TPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPPSP 406
Score = 35.4 bits (80), Expect = 0.12
Identities = 57/225 (25%), Positives = 79/225 (35%), Gaps = 27/225 (12%)
Query: 270 PPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAA 329
P + P L + PPPPS S +S+ S + S+SA STP + A
Sbjct: 863 PDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGA 922
Query: 330 AAALLYGTGGAEDLLAPGAPCAACSSASCANN-----AFAFGPELSSLITPLAIQTHNFA 384
AA+ P A AAC A+ + AF P P T +
Sbjct: 923 AAS-----------PPPDAELAACHPAAWSRGPAPPLAFRGAP---GAPLPWPPATGPGS 968
Query: 385 AVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPR--RLSDSPV 442
A Y ++ + AP A P P T AAA S + P+ RL + P+
Sbjct: 969 ADGLCTIYETEGPESATP-APGALDPGPSPGTSGGKAAAGAGAGASSRSPKQARLGELPL 1027
Query: 443 FDAPPSPPDSLSDRDSYLSGSL-----SSGSLSGSESPSLDPGRR 482
S L R L+ + S G G+E + G R
Sbjct: 1028 GALQASVVQHLLSRTLLLAAAEGAAGGSGGGPGGAEGGGVTGGAR 1072
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 49.3 bits (116), Expect = 8e-06
Identities = 55/227 (24%), Positives = 78/227 (34%), Gaps = 20/227 (8%)
Query: 270 PPGGLESPLLLDSPTS--RTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAA 327
P GGL +P +PT+ TPP P A+ A + +A+ S G T A
Sbjct: 1159 PKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAP 1218
Query: 328 AAAAALLYGTGGAEDLLAP-GAPCAACSSASCANNAFAFGPELSSLITPLA--------I 378
AA G +P GAP ++ A P + P A +
Sbjct: 1219 TTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGL 1278
Query: 379 QTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLS 438
T A + +PP P PP+AT P+ +P +PP P+
Sbjct: 1279 ATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPP-----PKGAP 1333
Query: 439 DSPVFDAPPSP---PDSLSDRDSYLSGSLSSGSLSGSESPSLDPGRR 482
P PPSP P + S G + S G P+ P +
Sbjct: 1334 TPPAV-TPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHK 1379
Score = 46.6 bits (109), Expect = 5e-05
Identities = 62/227 (27%), Positives = 83/227 (36%), Gaps = 31/227 (13%)
Query: 245 GFPREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPT--SRTPPPPSCSSASSCSSS 302
G P P PK + + PS P GG +P +PT + TPP P S A++
Sbjct: 975 GGPATPSPKGAPTPPAATPPS----PKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPK 1030
Query: 303 ASSCSSASAASTPSGAPTCC---ASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCA 359
+S A+ +P G+P A AA L GG GAP ++
Sbjct: 1031 GASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSP 1090
Query: 360 NNAFAF----GPELSSLITP------LAIQTHNFAAVAAAAYYRSQQQQQQQGLA--PPA 407
A G + TP LA H A AA + GLA PP
Sbjct: 1091 KGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAA----TPPSPKGGLATPPPK 1146
Query: 408 QPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLS 454
P P+AT P+ +PP P+ +P PPSP L+
Sbjct: 1147 GAPTTPAATPPSPKGGLATPP-----PKGAPTTPA-ATPPSPKGGLA 1187
Score = 41.6 bits (96), Expect = 0.002
Identities = 50/199 (25%), Positives = 75/199 (37%), Gaps = 14/199 (7%)
Query: 270 PPGGLESPLLLDSPT--SRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAA 327
P GG +P PT + TPP P A +++SS A A P GAPT A
Sbjct: 1452 PKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPA-VIP 1510
Query: 328 AAAAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPELSSLITPL---AIQTHNFA 384
++ + D +AP A + + + A P ++ +P AI T A
Sbjct: 1511 SSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEA 1570
Query: 385 AVAAAAYYRSQ----QQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDS 440
++ S +G P + PP+ T P+ AP P + P + +
Sbjct: 1571 PATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPAT 1630
Query: 441 P----VFDAPPSPPDSLSD 455
P +PP P SL D
Sbjct: 1631 PAPKGTPTSPPVTPSSLKD 1649
Score = 40.8 bits (94), Expect = 0.003
Identities = 68/253 (26%), Positives = 91/253 (35%), Gaps = 31/253 (12%)
Query: 218 ADERRPAPSGGASGDLRAFGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQPPGG--LE 275
A ++ PA S +S +A T G P P PK + + PS P GG
Sbjct: 904 APKQAPALSMTSSSPKKARAT--PAPKGIPASPSPKGAPTPPAATPPS----PKGGPATP 957
Query: 276 SPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLY 335
SP +P + TPP P A+ A + +A+ S P G P + A A+
Sbjct: 958 SPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPS-PKGGPATPSPKGAPTPPAVTP 1016
Query: 336 GTGGAEDLLAPGAPCAA--CSSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYR 393
+ G+P A AS A P+ S TPL A +
Sbjct: 1017 PS-------PKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKG 1069
Query: 394 SQQQQQQQG--LAPPAQPPAP---PSATLPAG-----AAAPPSPPFSFQLPRRLSDSPVF 443
+G P A PP+P P+ P G AA PPSP P +P
Sbjct: 1070 GPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPH-KGAPTT 1128
Query: 444 DA--PPSPPDSLS 454
A PPSP L+
Sbjct: 1129 PAATPPSPKGGLA 1141
Score = 30.4 bits (67), Expect = 3.9
Identities = 48/213 (22%), Positives = 73/213 (34%), Gaps = 27/213 (12%)
Query: 250 PRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSA 309
P P S G P+ P P S TPP + S + + S
Sbjct: 1333 PTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRG 1392
Query: 310 SAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPEL 369
A +P G PT A + AP P +A+ + G
Sbjct: 1393 PAIPSPKGDPTSPAVIPLSPKK-------------APATPVTREGAATPSK-----GDLT 1434
Query: 370 SSLITPLAIQ--THNFAAVAAAAYYRSQQQQQQQGLAPPA--QPPAP---PSATLPAGAA 422
+TP++++ A A S+ + PP+ +PPAP +++ P A
Sbjct: 1435 PPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAP 1494
Query: 423 APPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSD 455
A P+P + LP + SP P+ P S D
Sbjct: 1495 ATPAPMGAPTLPAVIPSSP--KEVPATPSSRRD 1525
Score = 29.6 bits (65), Expect = 6.6
Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 13/206 (6%)
Query: 283 PTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPT--CCASAAAAAAAALLYGTGGA 340
P+ PP + + + + A AS+P PT ASA A++ L Y
Sbjct: 735 PSPSLPPAGTPPGTKKVDGISHTSALAPVASSPKECPTEDSGASATASSKGTLTY----L 790
Query: 341 EDLLAPGAPCAACSSASCANNAFAFGPE--LSSLITPLAIQTHNFAAVAAAAYYRSQQQQ 398
D +P + + + GP+ + +L +P++ +F + ++ Q +
Sbjct: 791 ADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSF---QGSK 847
Query: 399 QQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDS 458
PP+P A P +A P P LP + + +P P P + +
Sbjct: 848 DSPATTHSPTPPSPKGA--PTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAP 905
Query: 459 YLSGSLSSGSLSGSESPSLDPGRRLP 484
+ +LS S S ++ + + +P
Sbjct: 906 KQAPALSMTSSSPKKARATPAPKGIP 931
Score = 29.6 bits (65), Expect = 6.6
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 39 PVAAAPSSGFAPGFLRRHSASNLHALAHPAPSPGSCSPKFPGA-ANGSSCGSAA--AGGP 95
P + P +G PG + S+ ALA A SP C + GA A SS G+ A P
Sbjct: 735 PSPSLPPAGTPPGTKKVDGISHTSALAPVASSPKECPTEDSGASATASSKGTLTYLADSP 794
Query: 96 TSYGTLKEP 104
+ G P
Sbjct: 795 SPLGVSVSP 803
>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
Length = 669
Score = 48.9 bits (115), Expect = 1e-05
Identities = 73/269 (27%), Positives = 109/269 (40%), Gaps = 41/269 (15%)
Query: 222 RPAPSGGASGDLRAFGTRDALHLGFPREPRPKLHHSLSFSGFPSGHHQPP--GGLESPLL 279
+P+ S GA A+ + + LG +P + S+ PS P G L SP
Sbjct: 240 QPSVSLGA-----AYRAQPSASLGVGYRTQPMTAQAASYRAQPSVSLGAPYRGQLASPSS 294
Query: 280 LDSPTSRTPP----PPSCSSASSCSSSASSCSS-----------ASAASTPSGAPTCCAS 324
+ S P PS S+ SS A++ SS AS + PS AS
Sbjct: 295 QSAAASSLGPYGGAQPSASALSSYGGQAAAASSLNSYGAQGSSLASYGNQPSSYGAQAAS 354
Query: 325 AAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPELSSLITPLAIQTHNFA 384
+ AAA Y T GA L AA A A ++ A+G + +S +
Sbjct: 355 SYGVRAAASSYNTQGAASSLGSYGAQAASYGAQSAASSLAYGAQAAS-----------YN 403
Query: 385 AVAAAAY-YRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVF 443
A +A+Y +S QQ + +QP A PA AAA S P ++ + +P+
Sbjct: 404 AQPSASYNAQSAPYAAQQAASYSSQPAA--YVAQPATAAAYASQPAAYAAQ---ATTPMA 458
Query: 444 DAPPSPPDSLSDRDSYLSGSLSSGSLSGS 472
+ + P + +SY G+ +S LSGS
Sbjct: 459 GSYGAQPVVQTQLNSY--GAQASMGLSGS 485
Score = 31.2 bits (69), Expect = 2.3
Identities = 68/231 (29%), Positives = 90/231 (38%), Gaps = 40/231 (17%)
Query: 292 SCSSASSCSSSASSCSSASAA--STPSGAPTCCASAAAAAAAAL--LYGTGGAEDLLAP- 346
+ SA + A+S SS AA + P+ A + AA AA A + G+ GA+ ++
Sbjct: 411 NAQSAPYAAQQAASYSSQPAAYVAQPATAAAYASQPAAYAAQATTPMAGSYGAQPVVQTQ 470
Query: 347 ----------------GAPCAACSSASCANNAFAFGPELSS-LITPLAIQTHNFAAVA-- 387
GA AA ++ S A A+G + S+ L P Q+ A +
Sbjct: 471 LNSYGAQASMGLSGSYGAQSAAAATGSYGAAA-AYGAQPSATLAAPYRTQSSASLAASYA 529
Query: 388 ------AAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQL--PRRLSD 439
AAA YR Q G P+ S A A + P P +L PR D
Sbjct: 530 AQQHPQAAASYRGQPGNAYDGAGQPSAAYLSMSQGAVANANSTPPPYERTRLSPPRASYD 589
Query: 440 SPVFDAPPSPPDSLSDRD-SYLSG--SLSSGSLSGSESP---SLDPGRRLP 484
P A SDR + LS LS LS SP SLD RRLP
Sbjct: 590 DPYKKAVAMSKRYGSDRRLAELSDYRRLSESQLSFRRSPTKSSLD-YRRLP 639
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 48.9 bits (115), Expect = 1e-05
Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 24/220 (10%)
Query: 283 PTSRTPPPPSCSSASSCSSSA------SSCSSASAASTPSG--APTCCASAAAAAAAAL- 333
P + P PPS S++ S+SA + ++++A P+ AP +++A A+ L
Sbjct: 1748 PLASAPLPPSTSASVPASTSAPLPATLTPVPASTSAPVPASTLAPVLASTSAPVPASPLA 1807
Query: 334 -LYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYY 392
+ + + AA +S+S +A A P L+S+ TP ++ A++ A
Sbjct: 1808 PVSASASVSASVPASTSAAAITSSSAPASAPAPTPILASVSTPASVTILASASIPILASA 1867
Query: 393 RSQQQQQQQGLAPPAQPPAPP---SATLPAGA--AAPPSPPFSFQLPRRLSDSPVF---D 444
+ AP A PA P + T+PA A A+ P P S P + +PV
Sbjct: 1868 LASTSAPTP--APAASSPAAPVITAPTIPASAPTASVPLAPASASAPAP-APTPVSAPNP 1924
Query: 445 APPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPGRRLP 484
APP+P + + + L + S S + P P RLP
Sbjct: 1925 APPAPAQTQAQTHKPVQNPLQTTSQSSKQPP---PSIRLP 1961
Score = 40.0 bits (92), Expect = 0.005
Identities = 33/104 (31%), Positives = 39/104 (37%), Gaps = 31/104 (29%)
Query: 396 QQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPF--------------------SFQLPR 435
QQQQQQG+ P P P S+T+P P P S+ PR
Sbjct: 688 QQQQQQGVLPQTVPSQPSSSTVPPPPHRPLYQPMQPHPQHLASMGFDPRWLMMQSYMDPR 747
Query: 436 RLSDSPVFDAPP-----SPPDSLSDRDSYLSGSLSSGSLSGSES 474
+S P D PP PP L RD GS + SES
Sbjct: 748 MMSGRPAMDIPPIHPGMIPPKPLMRRDQ------MEGSPNSSES 785
Score = 31.2 bits (69), Expect = 2.3
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 406 PAQPPAPPSAT-LPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSL 464
P APP AT + + A+ P + ++ + PV A +P SLS +Y + SL
Sbjct: 2269 PVTSTAPPIATGVSSSASGPSTANYNSFSSASMPQIPV--ASVTPTASLSGAGTYTTSSL 2326
Query: 465 SSGSLSGSESPSL 477
S+ S + S+ P++
Sbjct: 2327 STKSTTTSDPPNI 2339
>gi|11641239 hypothetical protein LOC53838 [Homo sapiens]
Length = 449
Score = 47.0 bits (110), Expect = 4e-05
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 9/169 (5%)
Query: 281 DSPTSRTPPP-PSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGG 339
D TS P S ++A+S +++ASS + AS+A T + + T AS A AA+ +
Sbjct: 100 DGVTSIAPTAVASSTTAASITTAASSMTVASSAPTTAASSTTVASIAPTTAASSMTAASS 159
Query: 340 AEDLLAPGAPCAACSSASCANNAFAFGPELSSLIT--PLAIQTHNFAAVAAAAYYRSQQQ 397
LA AP + + + + A P LS+ + P + A +A A R+Q
Sbjct: 160 TPMTLALPAPTSTSTGRTPSTTATGH-PSLSTALAQVPKSSALPRTATLATLAT-RAQTV 217
Query: 398 QQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLS----DSPV 442
+ P PS +P+ AA P PP Q +S D PV
Sbjct: 218 ATTANTSSPMSTRPSPSKHMPSDTAASPVPPMRPQAQGPISQVSVDQPV 266
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 46.6 bits (109), Expect = 5e-05
Identities = 48/189 (25%), Positives = 69/189 (36%), Gaps = 40/189 (21%)
Query: 159 CRPFEESGTCKYGEKCQFAHGFHELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNA 218
CR F G C+ G +C F+H + T +C+ ++ G+C YG RC + H
Sbjct: 8 CRYFMH-GVCREGSQCLFSHDLANSKPST--------ICK-YYQKGYCAYGTRCRYDHT- 56
Query: 219 DERRPAPSGGASGDLRAFGTRDALHLGFP------------------REPRPKLHHSLSF 260
R A +GGA G + A H P RE R + +
Sbjct: 57 --RPSAAAGGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNL 114
Query: 261 SGFPSGHHQPPGGLESPLLLDSPTSRTPPPPS--CSSASSCSSSASSCSSASAASTPSGA 318
SG QP ++ +P S + P PS S + S A+S+ S
Sbjct: 115 SGMAERKTQPS-------MVSNPGSCSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNE 167
Query: 319 PTCCASAAA 327
C AAA
Sbjct: 168 QQLCPYAAA 176
>gi|120952764 mastermind-like domain containing 1 [Homo sapiens]
Length = 774
Score = 46.2 bits (108), Expect = 7e-05
Identities = 56/200 (28%), Positives = 79/200 (39%), Gaps = 28/200 (14%)
Query: 275 ESPLLLDSP--TSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAA 332
E PL+LD P T T P PS S S ASS AS+ S +G S++ + +
Sbjct: 205 EEPLVLDHPQATLSTTPKPSVQM-SHLESLASSKEFASSCSQVTGMSLQIPSSSTGISYS 263
Query: 333 LLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYY 392
+ ++ +++P + A S A A P L P H A+AA+
Sbjct: 264 I---PSTSKQIVSPSSSMAQSKSQVQAMLPVALPP----LPVPQWHHAHQLKALAAS--- 313
Query: 393 RSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDS 452
+ +QQG P PP + P P PP P+ PP PP S
Sbjct: 314 KQGSATKQQGPTPSWSGLPPPGLSPPYRPVPSPHPP------------PLPLPPPPPPFS 361
Query: 453 LSDRDSYLSGSLSSGSLSGS 472
S + +SS +LSGS
Sbjct: 362 ---PQSLMVSCMSSNTLSGS 378
Score = 33.5 bits (75), Expect = 0.46
Identities = 51/203 (25%), Positives = 68/203 (33%), Gaps = 36/203 (17%)
Query: 242 LHLGFPREPRPKLHHSLSFSGF---------------PSGHHQPPGGLESPLLL----DS 282
L + P P P+ HH+ PS PP GL P
Sbjct: 289 LPVALPPLPVPQWHHAHQLKALAASKQGSATKQQGPTPSWSGLPPPGLSPPYRPVPSPHP 348
Query: 283 PTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAED 342
P PPPP S S S S S+ + ST G+P S+ +++ A
Sbjct: 349 PPLPLPPPPPPFSPQSLMVSCMS-SNTLSGSTLRGSPNALLSSMTSSSNA---------- 397
Query: 343 LLAPGAPCAACSSASCA-NNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQ 401
L P P A S A FGP+ SS++ L T + S
Sbjct: 398 ALGPAMPYAPEKLPSPALTQQPQFGPQ-SSILANLMSST----IKTPQGHLMSALPASNP 452
Query: 402 GLAPPAQPPAPPSATLPAGAAAP 424
G +PP +P S LP + P
Sbjct: 453 GPSPPYRPEKLSSPGLPQQSFTP 475
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 45.8 bits (107), Expect = 9e-05
Identities = 58/234 (24%), Positives = 86/234 (36%), Gaps = 26/234 (11%)
Query: 274 LESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAAL 333
+++P L R P P + + SS A ASAA+ P+ P +S AA A
Sbjct: 414 IKTPERLSLEGERQPKSPGSTPTTPTSSQAPQKLDASAAAAPASLPP--SSPAAPIATFS 471
Query: 334 LYGTGGAEDLLA------------PGAPCAACSSASCANNAFAFGPELSSLITPLAIQTH 381
L GGA + + G P + S + + A GP S + P
Sbjct: 472 LLPAGGAPTVFSFGSSSLKSSATVTGEPPSYSSGSDSSKAAPGPGPSTFSFVPPSKASLA 531
Query: 382 NFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSD-- 439
A + A + G P + PS + P A P PP + + LS+
Sbjct: 532 PTPAASPVAPSAASFSFGSSGFKPTLESTPVPSVSAPNIAMKPSFPPSTSAVKVNLSEKF 591
Query: 440 ------SPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPGRRLPIFS 487
+PV + +PP S S S +SG LS +P P +P+ S
Sbjct: 592 TAAATSTPVSSSQSAPPMS---PFSSASKPAASGPLS-HPTPLSAPPSSVPLKS 641
Score = 43.9 bits (102), Expect = 3e-04
Identities = 60/220 (27%), Positives = 86/220 (39%), Gaps = 33/220 (15%)
Query: 259 SFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSG- 317
+FS P+G S L S T PP S + S ++ S + PS
Sbjct: 469 TFSLLPAGGAPTVFSFGSSSLKSSATVTGEPPSYSSGSDSSKAAPGPGPSTFSFVPPSKA 528
Query: 318 --APTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGPELSSLITP 375
APT AS A +AA+ +G+ G + L P + S+ + A +F P S++
Sbjct: 529 SLAPTPAASPVAPSAASFSFGSSGFKPTL-ESTPVPSVSAPNIAMKP-SFPPSTSAVKVN 586
Query: 376 LAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPR 435
L + F A A + S Q APP P + S +G + P+P
Sbjct: 587 L---SEKFTAAATSTPVSSSQS------APPMSPFSSASKPAASGPLSHPTP-------- 629
Query: 436 RLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESP 475
LS +PP S+ + S L S S S GS SP
Sbjct: 630 -LS---------APPSSVPLKSSVLP-SPSGRSAQGSSSP 658
Score = 42.7 bits (99), Expect = 8e-04
Identities = 58/227 (25%), Positives = 88/227 (38%), Gaps = 33/227 (14%)
Query: 281 DSPTSRTPPPPSCSSASSCSSSASSCSSAS-----AASTPSGAPTCCASAAAAAAAALLY 335
D+ T PP S S + +A++ SSA +STP + T A +A A +
Sbjct: 1576 DARTEAVPPASSFSVPGQTAVTAAAISSAGPVAVETSSTPIASSTTSIVAPGPSAEAAAF 1635
Query: 336 GTGGAEDLLAPGAPCAACSSA-SCANNAFAFGPELSSLITPLAI---------QTHNFAA 385
GT + + P A+ SSA + N A P + + +A QT + A+
Sbjct: 1636 GTVTSGSSVFAQPPAASSSSAFNQLTNNTATAPSATPVFGQVAASTAPSLFGQQTGSTAS 1695
Query: 386 VAAAAYYRSQQQQQQQGLAPPAQPPAPP---------SATLPAGAAAPPSPPFSFQLPRR 436
AAA Q G + PA P A++ +A+ + FSF P
Sbjct: 1696 TAAAT-----PQVSSSGFSSPAFGTTAPGVFGQTTFGQASVFGQSASSAASVFSFSQP-G 1749
Query: 437 LSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLS---GSESPSLDPG 480
S P F P S + + + + S +S S S G SP+ G
Sbjct: 1750 FSSVPAFGQPASSTPTSTSGSVFGAASSTSSSSSFSFGQSSPNTGGG 1796
Score = 36.2 bits (82), Expect = 0.070
Identities = 54/229 (23%), Positives = 87/229 (37%), Gaps = 46/229 (20%)
Query: 261 SGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPT 320
SG PSG + +P +L T PP SSA++ S + + +S S+ + P
Sbjct: 1366 SGVPSGFN-----FTAPPVLGKHTE----PPVTSSATTTSVAPPAATSTSSTAVFGSLPV 1416
Query: 321 CCASAA----------AAAAAALLYGTGGAEDLLAPGA--PCAACSSASCANNAFAFGPE 368
A ++ +A + +G+ + P A P A + + +FG
Sbjct: 1417 TSAGSSGVISFGGTSLSAGKTSFSFGSQQTNSTVPPSAPPPTTAATPLPTSFPTLSFGSL 1476
Query: 369 LSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQPPAPPSATLPAGAAAPPSPP 428
LSS TP + RS ++ L P P + + A AA+
Sbjct: 1477 LSSATTPSLPMSAG----------RSTEEATSSAL-----PEKPGDSEVSASAASLLEEQ 1521
Query: 429 FSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSL 477
S QLP+ APP DS+ ++ L+ S S + + S SL
Sbjct: 1522 QSAQLPQ---------APPQTSDSVK-KEPVLAQPAVSNSGTAASSTSL 1560
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 45.8 bits (107), Expect = 9e-05
Identities = 54/168 (32%), Positives = 69/168 (41%), Gaps = 16/168 (9%)
Query: 292 SCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCA 351
S SS +S + + S TP+ P + AAA L P P A
Sbjct: 1111 SSSSEEQRRASETLSGTGSEEDTPASEPAAALPRKSGRAAATRSRIPRPIGLRMP-MPVA 1169
Query: 352 ACSSASCANNAFAFGPELSSLITP-LAIQTHNFAAVAAAAYYRSQQQQQQQGLAPP---- 406
A AS ++ A P L + IT L +QT +A AA +Q +GL P
Sbjct: 1170 AQQPASRSHGA---APALDTAITSRLQLQTPPGSATAADL---RPKQPPGRGLGPGRAQA 1223
Query: 407 -AQPPAPPSATLPAGAAA---PPSPPFSFQLPRRLSDSPVFDAPPSPP 450
A+PPAP S LPA +A + P S L RR S SP A P P
Sbjct: 1224 GARPPAPRSPRLPASTSAARNASASPRSQSLSRRESPSPSHQARPGVP 1271
>gi|119226260 calcium homeostasis endoplasmic reticulum protein
[Homo sapiens]
Length = 916
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Query: 368 ELSSLITPL---------AIQTHNFAAVAAAAYYRSQQQQQQQGLAPPAQ---------P 409
E SS++ P+ ++T + V + A + QQQQQQQ L P P
Sbjct: 298 EYSSVVQPVQLAFQQQIQTLKTQHEEFVTSLAQQQQQQQQQQQQLQMPQMEAEVKATPPP 357
Query: 410 PAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPD 451
PAPP A PA A P + P + P ++ S ++AP D
Sbjct: 358 PAPPPAPAPAPAIPPTTQPDDSKPPIQMPGSSEYEAPGGVQD 399
>gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo
sapiens]
Length = 650
Score = 45.1 bits (105), Expect = 2e-04
Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 125 SENGDRSQHLLHLQQQQKGGGGSQINSTRY-KTELCRPF--EESGTCKYGEKCQFAHGFH 181
+E G++ Q + Q KG + T Y K LC E + C +G++C+F H
Sbjct: 91 AEPGEQLQTQKRARGQNKGR--PHVKPTNYDKNRLCPSLIQESAAKCFFGDRCRFLHDVG 148
Query: 182 ELRSLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERRPAPSGGASGDLRAFGTR 239
R L P C F T G CPYG C F RP +L A GT+
Sbjct: 149 --RYLETKPADLGPRCVLFETFGRCPYGVTCRFA--GAHLRPEGQNLVQEELAARGTQ 202
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 44.7 bits (104), Expect = 2e-04
Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 30/160 (18%)
Query: 287 TPPPPSCS-SASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLA 345
TPP S S S+SS +SS+S+ +A+AA+ G P AS+ + AA+ ++ A
Sbjct: 128 TPPAVSSSASSSSSASSSSANPAAAAAAGLGGNPVAAASSLSTPAASSIWSPASISPGSA 187
Query: 346 PGA-----PCAACSSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQQQ 400
P + P AA S+ SC + A G AA AAA+Y S Q
Sbjct: 188 PASVSVPEPLAAPSNTSCMQRSVAAG-----------------AATAAASYPMSYGQGGS 230
Query: 401 QGLAPPAQPPAPPSATLPAG--AAAPPSPPFSFQLPRRLS 438
G P PS++ G ++ +P S P +LS
Sbjct: 231 YGQGYPT-----PSSSYFGGVDCSSYLAPMHSHHHPHQLS 265
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 44.7 bits (104), Expect = 2e-04
Identities = 53/211 (25%), Positives = 80/211 (37%), Gaps = 20/211 (9%)
Query: 248 REPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCS 307
+ P P+ S SG+ PP SPL P S + ++A++ +++A++ +
Sbjct: 459 KHPPPRTQLPSSSGKISSGNSFPPQQAGSPL--KRPFSAAAAIAAAAAAAAAAAAAAAAA 516
Query: 308 SASAASTPSGAPTCCASAAAAAAAALLYGTGGAEDLLAPGAPCAACSSASCANNAFAFGP 367
+ + A + AP A+AA A AAA A AP AA S+A + +
Sbjct: 517 APAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQKPSVPL 576
Query: 368 ELSSLITPLAIQTHNFAAVAAAAYYRSQQQ-----------QQQQGLAPPAQPPAPPSAT 416
+S P A F +A A R+ Q Q L +P P +
Sbjct: 577 IQASRPCPAAQPPTKFIKIAPAIQLRTGSTGLKAINVEGPVQGAQALGSSFKPVQAPGSG 636
Query: 417 LPAGAAAPPSPPFSFQLPRRLSDSPVFDAPP 447
PA A S S S P+ DA P
Sbjct: 637 APAPAGISGSDLQS-------SGGPLPDARP 660
Score = 35.8 bits (81), Expect = 0.092
Identities = 51/181 (28%), Positives = 68/181 (37%), Gaps = 31/181 (17%)
Query: 247 PREPRPKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSC 306
P +P P S S SG G PP + P +S PP + + +++
Sbjct: 441 PEQPDPVWVQS-SVSG--KGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLKRPFSAAA 497
Query: 307 SSASAASTPSGAPTCCASAAA----AAAAALLYGTGGAEDLLAPGAPCAACSSASCANNA 362
+ A+AA+ + A A+AA AAAAA A L A AP A ++A A
Sbjct: 498 AIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAPAPAPAAAP----A 553
Query: 363 FAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQQ----QQQGLAPPAQPPAPPSATLP 418
A P AA A+AA SQ+ Q P AQPP P
Sbjct: 554 VAAAP----------------AAAASAAPSHSQKPSVPLIQASRPCPAAQPPTKFIKIAP 597
Query: 419 A 419
A
Sbjct: 598 A 598
>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
Length = 1302
Score = 44.7 bits (104), Expect = 2e-04
Identities = 56/197 (28%), Positives = 82/197 (41%), Gaps = 31/197 (15%)
Query: 278 LLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCASAAAAAAAALLYGT 337
LLL++ ++ P CS AS +SS SS +S A TPS S+ +L +
Sbjct: 243 LLLNTGSNPGTSPMFCSVASFGASSLSSLYESSPAPTPS-----FWSSVPVMGPSLASPS 297
Query: 338 GGAEDLLAPGAPCAACSSASCANNAFAFGPELSSLITPLAIQTHNFAAVAAAAYYRSQQQ 397
A L P P + S+AS A G + SS TH +A+
Sbjct: 298 RAASQLAVPSTPLSPHSAAS----GTAAGSQPSSPRYRPYTVTHPWAS------------ 341
Query: 398 QQQQGLAPPAQPPAPPSATLPAGAAAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRD 457
G++ + P+P PA A++P + P S R S P PP+ P + S R
Sbjct: 342 ---SGVSILSSSPSP-----PALASSPQAVPASSSRQRPSSTGP--PLPPASPSATSRRP 391
Query: 458 SYLSGSLSSGSLSGSES 474
S L S S G+ G+ +
Sbjct: 392 SSLRISPSLGASGGASN 408
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 44.3 bits (103), Expect = 3e-04
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 277 PLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASAASTPSGAPTCCAS---------AAA 327
P L PT PP P S+++S S + +S SSA+++ PS P + A+A
Sbjct: 4 PAALIPPTQLVPPQPPISTSASSSGTTTSTSSATSSPAPSIGPPASSGPTLFRPEPIASA 63
Query: 328 AAAAALLYGTGG 339
AAAAA + TGG
Sbjct: 64 AAAAATVTSTGG 75
Score = 32.3 bits (72), Expect = 1.0
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 252 PKLHHSLSFSGFPSGHHQPPGGLESPLLLDSPTSRTPPPPSCSSASSCSSSASSCSSASA 311
P L + + SG G GG+ S +++ T S SS+SS SSS+SS SS+S+
Sbjct: 106 PNLAAASNGSGGGGGGISAGGGVASSTPINASTG------SSSSSSSSSSSSSSSSSSSS 159
Query: 312 ASTPSG 317
+S+ G
Sbjct: 160 SSSSCG 165
Score = 30.8 bits (68), Expect = 3.0
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 285 SRTPPPPSCSSASSCSSSASSCSSASAASTPSGA 318
S TP S S+SS SSS+SS SS+S++S+ S +
Sbjct: 130 SSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSS 163
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,631,384
Number of Sequences: 37866
Number of extensions: 1618042
Number of successful extensions: 23365
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 1000
Number of HSP's that attempted gapping in prelim test: 13514
Number of HSP's gapped (non-prelim): 7847
length of query: 494
length of database: 18,247,518
effective HSP length: 106
effective length of query: 388
effective length of database: 14,233,722
effective search space: 5522684136
effective search space used: 5522684136
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.