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Search of human proteins with 157743252
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157743252 pecanex-like 3 [Homo sapiens]
(2034 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157743252 pecanex-like 3 [Homo sapiens] 4142 0.0
gi|126723564 pecanex-like 1 [Homo sapiens] 1728 0.0
gi|134254443 pecanex-like 2 [Homo sapiens] 1568 0.0
gi|145580590 hepatitis C virus F protein-binding protein 2 [Homo... 67 1e-10
gi|163965366 nascent polypeptide-associated complex alpha subuni... 64 2e-09
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 58 8e-08
gi|19924099 synapsin I isoform Ia [Homo sapiens] 57 1e-07
gi|19924097 synapsin I isoform Ib [Homo sapiens] 57 1e-07
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 57 2e-07
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 57 2e-07
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 56 3e-07
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 56 3e-07
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 56 3e-07
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 56 4e-07
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 55 5e-07
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 55 7e-07
gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] 55 7e-07
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 55 9e-07
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 54 2e-06
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 52 6e-06
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 52 6e-06
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi... 52 8e-06
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 52 8e-06
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 52 8e-06
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 52 8e-06
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 52 8e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 51 1e-05
gi|160707881 formin 2 [Homo sapiens] 51 1e-05
gi|239049540 FCH domain only 1 isoform c [Homo sapiens] 50 2e-05
gi|239049457 FCH domain only 1 isoform b [Homo sapiens] 50 2e-05
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 4142 bits (10742), Expect = 0.0
Identities = 2034/2034 (100%), Positives = 2034/2034 (100%)
Query: 1 MGSQVLQILRQGVWASLTGGWFFDPHQSTFSNCFHLYVWIFLLIFPFLLYMVLPPSLMVA 60
MGSQVLQILRQGVWASLTGGWFFDPHQSTFSNCFHLYVWIFLLIFPFLLYMVLPPSLMVA
Sbjct: 1 MGSQVLQILRQGVWASLTGGWFFDPHQSTFSNCFHLYVWIFLLIFPFLLYMVLPPSLMVA 60
Query: 61 GVYCLVVAVIFATIKTVNYRLHAMFDQGEIVEKRSSTMGELEEEPAQGDSNPPRDPGVEM 120
GVYCLVVAVIFATIKTVNYRLHAMFDQGEIVEKRSSTMGELEEEPAQGDSNPPRDPGVEM
Sbjct: 61 GVYCLVVAVIFATIKTVNYRLHAMFDQGEIVEKRSSTMGELEEEPAQGDSNPPRDPGVEM 120
Query: 121 TVFRKVSSTPPVRCSSQHSVFGFNQVSELLPRMEDSGPLRDIKELVREQGSNNVIVTSAD 180
TVFRKVSSTPPVRCSSQHSVFGFNQVSELLPRMEDSGPLRDIKELVREQGSNNVIVTSAD
Sbjct: 121 TVFRKVSSTPPVRCSSQHSVFGFNQVSELLPRMEDSGPLRDIKELVREQGSNNVIVTSAD 180
Query: 181 REMLKLSSQEKLIGDLPQTPPGAVPDPSLASTDSSEPSPLAGDGAPWSGSSMADTPMSPL 240
REMLKLSSQEKLIGDLPQTPPGAVPDPSLASTDSSEPSPLAGDGAPWSGSSMADTPMSPL
Sbjct: 181 REMLKLSSQEKLIGDLPQTPPGAVPDPSLASTDSSEPSPLAGDGAPWSGSSMADTPMSPL 240
Query: 241 LKGSLSQELSKSFLTLTQPDRALVRTSSRREQRRGAGGYQPLDRRGSGEPTPQKAGSSDS 300
LKGSLSQELSKSFLTLTQPDRALVRTSSRREQRRGAGGYQPLDRRGSGEPTPQKAGSSDS
Sbjct: 241 LKGSLSQELSKSFLTLTQPDRALVRTSSRREQRRGAGGYQPLDRRGSGEPTPQKAGSSDS 300
Query: 301 CFSGTDRETLSSFKSEKTNSTHLDSPPGGPAPEGSDTDPPSEAELPASPDAGVPSDDTLR 360
CFSGTDRETLSSFKSEKTNSTHLDSPPGGPAPEGSDTDPPSEAELPASPDAGVPSDDTLR
Sbjct: 301 CFSGTDRETLSSFKSEKTNSTHLDSPPGGPAPEGSDTDPPSEAELPASPDAGVPSDDTLR 360
Query: 361 SFDTVIGAGTPPGLAEPLLVVRPKDLALLRPSKRQPPLRRHSPPGRAPRRPLLEGGGFFE 420
SFDTVIGAGTPPGLAEPLLVVRPKDLALLRPSKRQPPLRRHSPPGRAPRRPLLEGGGFFE
Sbjct: 361 SFDTVIGAGTPPGLAEPLLVVRPKDLALLRPSKRQPPLRRHSPPGRAPRRPLLEGGGFFE 420
Query: 421 DEDTSEGSELSPASSLRSQRRYSTDSSSSTSCYSPESSRGAAGGPRKRRAPHGAEEGTAV 480
DEDTSEGSELSPASSLRSQRRYSTDSSSSTSCYSPESSRGAAGGPRKRRAPHGAEEGTAV
Sbjct: 421 DEDTSEGSELSPASSLRSQRRYSTDSSSSTSCYSPESSRGAAGGPRKRRAPHGAEEGTAV 480
Query: 481 PPKRPYGTQRTPSTASAKTHARVLSMDGAGGDVLRPPLAGCKAELEAQVGVEQAASEPVV 540
PPKRPYGTQRTPSTASAKTHARVLSMDGAGGDVLRPPLAGCKAELEAQVGVEQAASEPVV
Sbjct: 481 PPKRPYGTQRTPSTASAKTHARVLSMDGAGGDVLRPPLAGCKAELEAQVGVEQAASEPVV 540
Query: 541 LPAEARRGPAANQPGWRGELQEEGAVGGAAEETGRRDRSSSVRRTQAIRRRHNAGSNPTP 600
LPAEARRGPAANQPGWRGELQEEGAVGGAAEETGRRDRSSSVRRTQAIRRRHNAGSNPTP
Sbjct: 541 LPAEARRGPAANQPGWRGELQEEGAVGGAAEETGRRDRSSSVRRTQAIRRRHNAGSNPTP 600
Query: 601 PASVMGSPPSSLQEAQRGRAASHSRALTLPSALHFASSLLLTRAGANVHEACTFDDTSEG 660
PASVMGSPPSSLQEAQRGRAASHSRALTLPSALHFASSLLLTRAGANVHEACTFDDTSEG
Sbjct: 601 PASVMGSPPSSLQEAQRGRAASHSRALTLPSALHFASSLLLTRAGANVHEACTFDDTSEG 660
Query: 661 AVHYFYDESGVRRSYTFGLAGGGYENPVGQQGEQTANGAWDRHSHSSSFHSADVPEATGG 720
AVHYFYDESGVRRSYTFGLAGGGYENPVGQQGEQTANGAWDRHSHSSSFHSADVPEATGG
Sbjct: 661 AVHYFYDESGVRRSYTFGLAGGGYENPVGQQGEQTANGAWDRHSHSSSFHSADVPEATGG 720
Query: 721 LNLLQPRPVVLQGMQVRRVPLEIPEEQTLMEEAPPRAQHSYKYWLLPGRWTSVRYERLAL 780
LNLLQPRPVVLQGMQVRRVPLEIPEEQTLMEEAPPRAQHSYKYWLLPGRWTSVRYERLAL
Sbjct: 721 LNLLQPRPVVLQGMQVRRVPLEIPEEQTLMEEAPPRAQHSYKYWLLPGRWTSVRYERLAL 780
Query: 781 LALLDRTRGVLENIFGVGLSSLVAFLGYLLLLKGFFTDIWVFQFCLVIASCQYSLLKSVQ 840
LALLDRTRGVLENIFGVGLSSLVAFLGYLLLLKGFFTDIWVFQFCLVIASCQYSLLKSVQ
Sbjct: 781 LALLDRTRGVLENIFGVGLSSLVAFLGYLLLLKGFFTDIWVFQFCLVIASCQYSLLKSVQ 840
Query: 841 PDAASPMHGHNWVIAYSRPVYFCICCLLIWLLDALGSAQPFPPVSLYGLTLFSASFFFCA 900
PDAASPMHGHNWVIAYSRPVYFCICCLLIWLLDALGSAQPFPPVSLYGLTLFSASFFFCA
Sbjct: 841 PDAASPMHGHNWVIAYSRPVYFCICCLLIWLLDALGSAQPFPPVSLYGLTLFSASFFFCA 900
Query: 901 RDVATVFTLCFPFVFLLGLLPQVNTCLMYLLEQIDMHGFGGTAATSPLTAVFSLSRSLLA 960
RDVATVFTLCFPFVFLLGLLPQVNTCLMYLLEQIDMHGFGGTAATSPLTAVFSLSRSLLA
Sbjct: 901 RDVATVFTLCFPFVFLLGLLPQVNTCLMYLLEQIDMHGFGGTAATSPLTAVFSLSRSLLA 960
Query: 961 AALLYGFCLGAIKTPWPEQHVPVLFSVFCGLLVALSYHLSRQSSDPTVLWSLIRSKLFPE 1020
AALLYGFCLGAIKTPWPEQHVPVLFSVFCGLLVALSYHLSRQSSDPTVLWSLIRSKLFPE
Sbjct: 961 AALLYGFCLGAIKTPWPEQHVPVLFSVFCGLLVALSYHLSRQSSDPTVLWSLIRSKLFPE 1020
Query: 1021 LEERSLETARAEPPDPLPDKMRQSVREVLHSDLVMCVVIAVLTFAISASTVFIALKSVLG 1080
LEERSLETARAEPPDPLPDKMRQSVREVLHSDLVMCVVIAVLTFAISASTVFIALKSVLG
Sbjct: 1021 LEERSLETARAEPPDPLPDKMRQSVREVLHSDLVMCVVIAVLTFAISASTVFIALKSVLG 1080
Query: 1081 FVLYALAGAVGFFTHYLLPQLRKQLPWFCLSQPVLKPLEYSQYEVRGAAQVMWFEKLYAG 1140
FVLYALAGAVGFFTHYLLPQLRKQLPWFCLSQPVLKPLEYSQYEVRGAAQVMWFEKLYAG
Sbjct: 1081 FVLYALAGAVGFFTHYLLPQLRKQLPWFCLSQPVLKPLEYSQYEVRGAAQVMWFEKLYAG 1140
Query: 1141 LQCVEKYLIYPAVVLNALTVDAHTVVSHPDKYCFYCRALLMTVAGLKLLRSAFCCPPQQY 1200
LQCVEKYLIYPAVVLNALTVDAHTVVSHPDKYCFYCRALLMTVAGLKLLRSAFCCPPQQY
Sbjct: 1141 LQCVEKYLIYPAVVLNALTVDAHTVVSHPDKYCFYCRALLMTVAGLKLLRSAFCCPPQQY 1200
Query: 1201 LTLAFTVLLFHFDYPRLSQGFLLDYFLMSLLCSKLWDLLYKLRFVLTYIAPWQITWGSAF 1260
LTLAFTVLLFHFDYPRLSQGFLLDYFLMSLLCSKLWDLLYKLRFVLTYIAPWQITWGSAF
Sbjct: 1201 LTLAFTVLLFHFDYPRLSQGFLLDYFLMSLLCSKLWDLLYKLRFVLTYIAPWQITWGSAF 1260
Query: 1261 HAFAQPFAVPHSAMLFVQALLSGLFSTPLNPLLGSAVFIMSYARPLKFWERDYNTKRVDH 1320
HAFAQPFAVPHSAMLFVQALLSGLFSTPLNPLLGSAVFIMSYARPLKFWERDYNTKRVDH
Sbjct: 1261 HAFAQPFAVPHSAMLFVQALLSGLFSTPLNPLLGSAVFIMSYARPLKFWERDYNTKRVDH 1320
Query: 1321 SNTRLVTQLDRNPGADDNNLNSIFYEHLTRSLQHTLCGDLVLGRWGNYGPGDCFVLASDY 1380
SNTRLVTQLDRNPGADDNNLNSIFYEHLTRSLQHTLCGDLVLGRWGNYGPGDCFVLASDY
Sbjct: 1321 SNTRLVTQLDRNPGADDNNLNSIFYEHLTRSLQHTLCGDLVLGRWGNYGPGDCFVLASDY 1380
Query: 1381 LNALVHLIEVGNGLVTFQLRGLEFRGTYCQQREVEAITEGVEEDEGCCCCEPGHLPRVLS 1440
LNALVHLIEVGNGLVTFQLRGLEFRGTYCQQREVEAITEGVEEDEGCCCCEPGHLPRVLS
Sbjct: 1381 LNALVHLIEVGNGLVTFQLRGLEFRGTYCQQREVEAITEGVEEDEGCCCCEPGHLPRVLS 1440
Query: 1441 FNAAFGQRWLAWEVTASKYVLEGYSISDNNAASMLQVFDLRKILITYYVKSIIYYVSRSP 1500
FNAAFGQRWLAWEVTASKYVLEGYSISDNNAASMLQVFDLRKILITYYVKSIIYYVSRSP
Sbjct: 1441 FNAAFGQRWLAWEVTASKYVLEGYSISDNNAASMLQVFDLRKILITYYVKSIIYYVSRSP 1500
Query: 1501 KLEVWLSHEGITAALRPVRVPGYADSDPTFSLSVDEDYDLRLSGLSLPSFCAVHLEWIQY 1560
KLEVWLSHEGITAALRPVRVPGYADSDPTFSLSVDEDYDLRLSGLSLPSFCAVHLEWIQY
Sbjct: 1501 KLEVWLSHEGITAALRPVRVPGYADSDPTFSLSVDEDYDLRLSGLSLPSFCAVHLEWIQY 1560
Query: 1561 CASRRSQPVDQDWNSPLVTLCFGLCVLGRRALGTASHSMSASLEPFLYGLHALFKGDFRI 1620
CASRRSQPVDQDWNSPLVTLCFGLCVLGRRALGTASHSMSASLEPFLYGLHALFKGDFRI
Sbjct: 1561 CASRRSQPVDQDWNSPLVTLCFGLCVLGRRALGTASHSMSASLEPFLYGLHALFKGDFRI 1620
Query: 1621 TSPRDEWVFADMDLLHRVVAPGVRMALKLHQDHFTSPDEYEEPAALYDAIAANEERLVIS 1680
TSPRDEWVFADMDLLHRVVAPGVRMALKLHQDHFTSPDEYEEPAALYDAIAANEERLVIS
Sbjct: 1621 TSPRDEWVFADMDLLHRVVAPGVRMALKLHQDHFTSPDEYEEPAALYDAIAANEERLVIS 1680
Query: 1681 HEGDPAWRSAILSNTPSLLALRHVLDDASDEYKIIMLNRRHLSFRVIKVNRECVRGLWAG 1740
HEGDPAWRSAILSNTPSLLALRHVLDDASDEYKIIMLNRRHLSFRVIKVNRECVRGLWAG
Sbjct: 1681 HEGDPAWRSAILSNTPSLLALRHVLDDASDEYKIIMLNRRHLSFRVIKVNRECVRGLWAG 1740
Query: 1741 QQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPLGYPIYVSPLTTSLAGSHPQLRAL 1800
QQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPLGYPIYVSPLTTSLAGSHPQLRAL
Sbjct: 1741 QQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPLGYPIYVSPLTTSLAGSHPQLRAL 1800
Query: 1801 WGGPISLGAIAHWLLRTWERLHKGCGAGCNSGGNVDDSDCSGGGGLTSLSNNPPVAHPTP 1860
WGGPISLGAIAHWLLRTWERLHKGCGAGCNSGGNVDDSDCSGGGGLTSLSNNPPVAHPTP
Sbjct: 1801 WGGPISLGAIAHWLLRTWERLHKGCGAGCNSGGNVDDSDCSGGGGLTSLSNNPPVAHPTP 1860
Query: 1861 ENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSR 1920
ENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSR
Sbjct: 1861 ENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSR 1920
Query: 1921 PPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPKSQAPLDLSLSLSLSLSPD 1980
PPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPKSQAPLDLSLSLSLSLSPD
Sbjct: 1921 PPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPKSQAPLDLSLSLSLSLSPD 1980
Query: 1981 VSTEASPPRASQDIPCLDSSAPESGTPMGALGDWPAPIEERESPAAQPLLEHQY 2034
VSTEASPPRASQDIPCLDSSAPESGTPMGALGDWPAPIEERESPAAQPLLEHQY
Sbjct: 1981 VSTEASPPRASQDIPCLDSSAPESGTPMGALGDWPAPIEERESPAAQPLLEHQY 2034
>gi|126723564 pecanex-like 1 [Homo sapiens]
Length = 2341
Score = 1728 bits (4475), Expect = 0.0
Identities = 977/1843 (53%), Positives = 1210/1843 (65%), Gaps = 138/1843 (7%)
Query: 142 GFNQVSELLPRMEDSGPLRDIKE-LVREQGSNNVIVTSADREMLKLSSQEKLIGDLPQTP 200
G + VSEL E S PL KE LV G + + D LK+++ + P T
Sbjct: 309 GLDPVSEL----ESSKPLSGSKESLVENSGLSGEFQLAGD---LKINTSQ------PPTK 355
Query: 201 PG-AVPDPSLASTDSSEPSPLAGDGAPWSGSSMADTPMSPLLKGSLSQELSKSFLT--LT 257
G + P + S DS G+ S S D + + S++ S + + L+
Sbjct: 356 SGKSKPLKAEKSMDSLRSLSTRSSGSTESYCSGTDRDTNSTVSSYKSEQTSSTHIESILS 415
Query: 258 QPDRA-LVRTSSRREQRRGAGGYQP----LDRRGSGEPTPQKAGSSDSCFSGTD------ 306
+ + + T S R++ AG + D+R S E +A ++ D
Sbjct: 416 EHEESPKAGTKSGRKKECCAGPEEKNSCASDKRTSSEKIAMEASTNSGVHEAKDPTPSDE 475
Query: 307 ---RETLSSFKSEKTN--------STHLDSPPGGPAPEGSDTDPPSEAELPASPDAGVPS 355
+ LS+ SE+ N ++ D PPG A + S S D+ V
Sbjct: 476 MHNQRGLSTSASEEANKNPHANEFTSQGDRPPGNTAENKEEKSDKSAV----SVDSKVRK 531
Query: 356 DDTLRSFDTVIGAGTPPGLAEPLLVVRPKDLALL-------RPSKRQPPLRRHSPPGRAP 408
D +G G VRPK +++ + +R+ +R S +
Sbjct: 532 D---------VGGKQKEG------DVRPKSSSVIHRTASAHKSGRRRTGKKRASSFDSSR 576
Query: 409 RRPLLEGGG----------FFEDEDTSEGSELSPASSLRSQRRYSTDSSSST---SCYSP 455
R + G F DED+S+ S+LS ASS++S ++S+DSSSST SC SP
Sbjct: 577 HRDYVCFRGVSGTKPHSAIFCHDEDSSDQSDLSRASSVQSAHQFSSDSSSSTTSHSCQSP 636
Query: 456 ESSRGAAGGPRKRRAPHGAEEGTAVPPKRPYGT------QRTPSTASAKTHARVLSMDGA 509
E A + E T P GT +RT ST SAKT ARVLS+D
Sbjct: 637 EGRYSALKTKHTHKERGTDSEHTHKAHLVPEGTSKKRATRRTSSTNSAKTRARVLSLDSG 696
Query: 510 -------GGDVLRP----PLAGCKAELEAQVGVEQAASEPVVLPAEAR-------RGPAA 551
++ P PL K++LEA+ G + E +L ++ R
Sbjct: 697 TVACLNDSNRLMAPESIKPLTTSKSDLEAKEG--EVLDELSLLGRASQLETVTRSRNSLP 754
Query: 552 NQPGWRGELQEEGAVGGAA---EETGRRDRSSSVRRTQAIRRRHNAGSNPTPPASVMGSP 608
NQ + E +E+ AV GAA EE R S R QA+RRRHNAGSNPTPP ++GSP
Sbjct: 755 NQVAFP-EGEEQDAVSGAAQASEEAVSFRRERSTFRRQAVRRRHNAGSNPTPPTLLIGSP 813
Query: 609 PSSLQEAQRGR-AASHSRALTLP---SALHFASSLLLTRAGANVHEACTFDDTSEGAVHY 664
SLQ+ Q+G+ + + + + P +A+ AS+ LL R G+ VH + D+ S
Sbjct: 814 -LSLQDGQQGQQSTAQVKVQSRPPSQAAVLSASASLLVRNGS-VHLEASHDNASAVGGSS 871
Query: 665 FYDESGVRRSYTFGLAGGGYENPVGQQGEQTANGAWDRHSHSSS-----FHSADV---PE 716
+DE G S + G + + A+ D SH SS F+ DV P+
Sbjct: 872 LHDELGKFSSTLYETGGCDMSLVNFEPAARRASNICDTDSHVSSSTSVRFYPHDVLSLPQ 931
Query: 717 ATGGLNLLQPRPVVLQGMQVRRVPLEIPEEQTLMEEAPPRAQHSYKYWLLPGRWTSVRYE 776
LN L L Q + ++ EEA + +H Y++W+LP W + ++
Sbjct: 932 IR--LNRLLTIDTDLLEQQDIDLSPDLAATYGPTEEAAQKVKHYYRFWILPQLWIGINFD 989
Query: 777 RLALLALLDRTRGVLENIFGVGLSSLVAFLGYLLLLKGFFTDIWVFQFCLVIASCQYSLL 836
RL LLAL DR R +LEN+ V L+ LVAFLG +LL++GFF DIWVFQFCLVIASCQYSLL
Sbjct: 990 RLTLLALFDRNREILENVLAVILAILVAFLGSILLIQGFFRDIWVFQFCLVIASCQYSLL 1049
Query: 837 KSVQPDAASPMHGHNWVIAYSRPVYFCICCLLIWLLDALGSAQPFPPVSLYGLTLFSASF 896
KSVQPD++SP HGHN +IAYSRPVYFCICC LIWLLD LYG+T +
Sbjct: 1050 KSVQPDSSSPRHGHNRIIAYSRPVYFCICCGLIWLLDYGSRNLTATKFKLYGITFTNPLV 1109
Query: 897 FFCARDVATVFTLCFPFVFLLGLLPQVNTCLMYLLEQIDMHGFGGTAATSPLTAVFSLSR 956
F ARD+ VFTLCFP VF +GLLPQVNT +MYL EQ+D+H FGG A TS L A++S
Sbjct: 1110 FISARDLVIVFTLCFPIVFFIGLLPQVNTFVMYLCEQLDIHIFGGNATTSLLAALYSFIC 1169
Query: 957 SLLAAALLYGFCLGAIKTPWPEQHVPVLFSVFCGLLVALSYHLSRQSSDPTVLWSLIRSK 1016
S++A ALLYG C GA+K W QH+PVLFS+FCGLLVA+SYHLSRQSSDP+VL+SL++SK
Sbjct: 1170 SIVAVALLYGLCYGALKDSWDGQHIPVLFSIFCGLLVAVSYHLSRQSSDPSVLFSLVQSK 1229
Query: 1017 LFPELEERSLETARAEPPDPLPDKMRQSVREVLHSDLVMCVVIAVLTFAISASTVFIALK 1076
+FP+ EE++ E +E DPLP+K+R SV E L SDLV+C+VI VL FAI STVF L+
Sbjct: 1230 IFPKTEEKNPEDPLSEVKDPLPEKLRNSVSERLQSDLVVCIVIGVLYFAIHVSTVFTVLQ 1289
Query: 1077 SVLGFVLYALAGAVGFFTHYLLPQLRKQLPWFCLSQPVLKPLEYSQYEVRGAAQVMWFEK 1136
L +VLY L G VGF THY+LPQ+RKQLPW C S P+LK LEY+QYEVR AA +MWFEK
Sbjct: 1290 PALKYVLYTLVGFVGFVTHYVLPQVRKQLPWHCFSHPLLKTLEYNQYEVRNAATMMWFEK 1349
Query: 1137 LYAGLQCVEKYLIYPAVVLNALTVDAHTVVSHPDKYCFYCRALLMTVAGLKLLRSAFCCP 1196
L+ L VEK +IYP +VLN L+ A T+ S P K AL++TVAGLKLLRS+F P
Sbjct: 1350 LHVWLLFVEKNIIYPLIVLNELSSSAETIAS-PKKLNTELGALMITVAGLKLLRSSFSSP 1408
Query: 1197 PQQYLTLAFTVLLFHFDYPRLSQGFLLDYFLMSLLCSKLWDLLYKLRFVLTYIAPWQITW 1256
QY+T+ FTVL F FDY S+ LLD F MS+L +KLW+LLYKL+FV TYIAPWQITW
Sbjct: 1409 TYQYVTVIFTVLFFKFDYEAFSETMLLDLFFMSILFNKLWELLYKLQFVYTYIAPWQITW 1468
Query: 1257 GSAFHAFAQPFAVPHSAMLFVQALLSGLFSTPLNPLLGSAVFIMSYARPLKFWERDYNTK 1316
GSAFHAFAQPFAVPHSAMLF+QA +S FSTPLNP LGSA+FI SY RP+KFWERDYNTK
Sbjct: 1469 GSAFHAFAQPFAVPHSAMLFIQAAVSAFFSTPLNPFLGSAIFITSYVRPVKFWERDYNTK 1528
Query: 1317 RVDHSNTRLVTQLDRNPGADDNNLNSIFYEHLTRSLQHTLCGDLVLGRWGNYGPGDCFVL 1376
RVDHSNTRL +QLDRNPG+DDNNLNSIFYEHLTRSLQH+LCGDL+LGRWGNY GDCF+L
Sbjct: 1529 RVDHSNTRLASQLDRNPGSDDNNLNSIFYEHLTRSLQHSLCGDLLLGRWGNYSTGDCFIL 1588
Query: 1377 ASDYLNALVHLIEVGNGLVTFQLRGLEFRGTYCQQREVEAITEGVEEDEGCCCCEPGHLP 1436
ASDYLNALVHLIE+GNGLVTFQLRGLEFRGTYCQQREVEAITEGVEEDEG CCCEPGH+P
Sbjct: 1589 ASDYLNALVHLIEIGNGLVTFQLRGLEFRGTYCQQREVEAITEGVEEDEGFCCCEPGHIP 1648
Query: 1437 RVLSFNAAFGQRWLAWEVTASKYVLEGYSISDNNAASMLQVFDLRKILITYYVKSIIYYV 1496
+LSFNAAF QRWLAWEV +KY+LEGYSI+DN+AASMLQVFDLRK+L TYYVK IIYYV
Sbjct: 1649 HMLSFNAAFSQRWLAWEVIVTKYILEGYSITDNSAASMLQVFDLRKVLTTYYVKGIIYYV 1708
Query: 1497 SRSPKLEVWLSHEGITAALRPVRVPGYADSDPTFSLSVDEDYDLRLSGLSLPSFCAVHLE 1556
+ S KLE WL++E + LR Y D DPTF+ ++DEDYD RL+G+S SFC ++L
Sbjct: 1709 TTSSKLEEWLANETMQEGLRLCADRNYVDVDPTFNPNIDEDYDHRLAGISRESFCVIYLN 1768
Query: 1557 WIQYCASRRSQPVDQDWNSPLVTLCFGLCVLGRRALGTASHSMSASLEPFLYGLHALFKG 1616
WI+YC+SRR++PVD D +S LVTLC+GLCVLGRRALGTASH MS++LE FLYGLHALFKG
Sbjct: 1769 WIEYCSSRRAKPVDVDKDSSLVTLCYGLCVLGRRALGTASHHMSSNLESFLYGLHALFKG 1828
Query: 1617 DFRITSPRDEWVFADMDLLHRVVAPGVRMALKLHQDHFTSPDEYEEPAALYDAIAANEER 1676
DFRI+S RDEW+FADM+LL +VV PG+RM++KLHQDHFTSPDEY++P LY+AI ++E+
Sbjct: 1829 DFRISSIRDEWIFADMELLRKVVVPGIRMSIKLHQDHFTSPDEYDDPTVLYEAIVSHEKN 1888
Query: 1677 LVISHEGDPAWRSAILSNTPSLLALRHVLDDASDEYKIIMLNRRHLSFRVIKVNRECVRG 1736
LVI+HEGDPAWRSA+L+N+PSLLALRHV+DD ++EYKIIMLNRR+LSFRVIKVN+ECVRG
Sbjct: 1889 LVIAHEGDPAWRSAVLANSPSLLALRHVMDDGTNEYKIIMLNRRYLSFRVIKVNKECVRG 1948
Query: 1737 LWAGQQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPLGYPIYVSPLTTSLAGSHPQ 1796
LWAGQQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQP+GYPI+VSPLTTS + SH Q
Sbjct: 1949 LWAGQQQELVFLRNRNPERGSIQNAKQALRNMINSSCDQPIGYPIFVSPLTTSYSDSHEQ 2008
Query: 1797 LRALWGGPISLGAIAHWLLRTWERLHKGCGAGCNSGGNVDDSDCSGGGGLTSLSNNPPVA 1856
L+ + GGPISLG I ++++ TW RL KGCGAGCNSGGN++DSD GGG + NN A
Sbjct: 2009 LKDILGGPISLGNIRNFIVSTWHRLRKGCGAGCNSGGNIEDSDT--GGGTSCTGNNATTA 2066
Query: 1857 HPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPP 1899
+ N N Q PG GSG G PP+ +PP
Sbjct: 2067 N----NPHSNVTQGSIGNPG-------QGSGTGLHPPVTSYPP 2098
Score = 182 bits (463), Expect = 2e-45
Identities = 136/414 (32%), Positives = 204/414 (49%), Gaps = 91/414 (21%)
Query: 1 MGSQVLQILRQGVWASLTGGWFFDPHQSTFSNCFHLYVWIFLLIFPFLLYMVLPPSLMVA 60
MGSQ LQILRQGVWA+L+GGW++DPHQ+TF N HLY+W+FLL PF LYM LP ++++
Sbjct: 1 MGSQTLQILRQGVWAALSGGWYYDPHQATFVNALHLYLWLFLLGLPFTLYMALPSTMIIV 60
Query: 61 GVYCLVVAVIFATIKTVNYRLHAMFDQGEIVEKRSSTMGELEEEPAQG-------DSNPP 113
VYC V+A +F +K VNYRLH D GE+V++ ++ + + QG DSN P
Sbjct: 61 AVYCPVIAAVFIVLKMVNYRLHRALDAGEVVDRTANEFTDQRTKAEQGNCSTRRKDSNGP 120
Query: 114 RDP--GVEMTVFRKVSSTPPVRCSSQHSVFGF---NQVSELLPRMEDSGPLRDIKELVR- 167
DP G+EM+ F + +TPPV CSS++S G NQ+ R+ + ++ + +
Sbjct: 121 SDPGGGIEMSEFIR-EATPPVGCSSRNSYAGLDPSNQIGSGSSRLGTAATIKGDTDTAKT 179
Query: 168 ---------------EQGSNNVIVTSADREMLKLSSQEKLIG----------DLPQTPPG 202
++GS + +ADR++ +L S + I DLP+
Sbjct: 180 SDDISLSLGQSSSLCKEGSEEQDL-AADRKLFRLVSNDSFISIQPSLSSCGQDLPRDFSD 238
Query: 203 AV----------PDPSLASTDSSEPSPLA------------GDGAPWSGSSMADTPMSPL 240
V D SL+S +E + L G P + SS P + L
Sbjct: 239 KVNLPSHNHHHHVDQSLSSACDTEVASLVPLHSHSYRKDHRPRGVPRTSSSAVAFPDTSL 298
Query: 241 LKGSLSQELS--------KSFLTLTQPDRALVRTSSRREQRRGAGGY-----QPLDRRGS 287
L Q+ +S L+ +LV S + + AG QP + G
Sbjct: 299 NDFPLYQQRRGLDPVSELESSKPLSGSKESLVENSGLSGEFQLAGDLKINTSQPPTKSGK 358
Query: 288 GEP-------------TPQKAGSSDSCFSGTDRE---TLSSFKSEKTNSTHLDS 325
+P + + +GS++S SGTDR+ T+SS+KSE+T+STH++S
Sbjct: 359 SKPLKAEKSMDSLRSLSTRSSGSTESYCSGTDRDTNSTVSSYKSEQTSSTHIES 412
>gi|134254443 pecanex-like 2 [Homo sapiens]
Length = 2137
Score = 1568 bits (4060), Expect = 0.0
Identities = 919/2029 (45%), Positives = 1207/2029 (59%), Gaps = 168/2029 (8%)
Query: 1 MGSQVLQILRQGVWASLTGGWFFDPHQSTFSNCFHLYVWIFLLIFPFLLYMVLPPSLMVA 60
M SQVLQ+LRQGVWA+LTGGW+ DP QS F+N HLY+W+FLL+ P L++ PP+ ++
Sbjct: 1 MVSQVLQLLRQGVWAALTGGWYHDPEQSKFTNSCHLYLWLFLLLLPLALHLAFPPNAIIV 60
Query: 61 GVYCLVVAVIFATIKTVNYRLHAMFDQGEIVEKRSSTMGEL--EEEPAQGDS-----NPP 113
YC V + F IK V+YRLH MFD+GE+++++ S E +++ A+G+ NP
Sbjct: 61 FFYCSAVTIFFTIIKLVSYRLHLMFDKGEVIQQKPSRKEEKPNKDKEAKGEHITNHRNPS 120
Query: 114 RDPGVEMTVFRKVS---STPPVRCSSQHSVFGFNQVSELLPRMEDSGPLRDIKELVREQG 170
+ + + S STPP+RCSS+ + S L + + D+K ++ +
Sbjct: 121 NNRQIHNGKKEEASRNLSTPPLRCSSRGQSITSHHSSGPL-ELSAQETVEDLKGVILLED 179
Query: 171 SNNVIVTSADREMLKLSSQEKLIGDLPQTPPGAVPDPSLASTD--SSEPSPLAGDGAPWS 228
V+S + S L T +P +A+ + + G G P
Sbjct: 180 HPIAPVSSTSPGIKVESLPASQAHMLETTTKSVIPVKPVATETLINGKGKERGGKGQP-- 237
Query: 229 GSSMADTPMSPLLKGSLSQE--LSK-SFLTLTQPDRALVRTSSRREQRRGAGGYQPLDRR 285
P+ +G L + L K L+L+Q D L+ T +QP
Sbjct: 238 -------PLRHRSEGGLVDKGPLKKLPHLSLSQYD--LLETDV---------SFQPWGSE 279
Query: 286 GS---GEPTPQKAGS-SDSCFSGTDRETLSSFKSEKTNSTHLDSPPGGPAPEGSDTDPPS 341
S EP GS + S + +++LSS S T + P PA D
Sbjct: 280 NSVLIPEPVSCPRGSIRERVQSKSPQDSLSS--SCPQCDTIVAKPVEEPADTSCQVDTSC 337
Query: 342 EAELPASPDAGVPSDDTLRSFDTVIGAGTPPGLAEPLLVV-----RPKDLALLRPSKR-- 394
+ +LP + + + G P L EP+ +V P + L S
Sbjct: 338 QGDLPLHQEVDSSDSEVAVTLIDTSQPGDPLSLHEPIKIVITMSSTPNSMTDLESSLHLR 397
Query: 395 -------------QP--PLRRHSPPGRAPRRPLL-----EGGGFFEDEDTSEGSELSPAS 434
+P P SP P++ EGGG GSE +P
Sbjct: 398 VVGTEKTSVKSDAEPTNPGAAGSPNAEQISIPVITLDLPEGGGGGVPCPEGNGSERTPE- 456
Query: 435 SLRSQRRYSTDSSSSTSCYSPESSRGAAGGPRKRRAPHGA------EEGTAVPPKRPYGT 488
R + R ST+ S S E R P + + G+ + T
Sbjct: 457 --RLKTRVSTNQCSGYG--SGEGGNAIKDHSSSSREPWESVSRLTPDTGSESKVGKEGQT 512
Query: 489 QRTPSTASA---KTHARVLSMDGAGGDVLRPPLAGCKAELEAQVGVEQAASEPVVLPAEA 545
PS+ + K HARVLS+D +G DV L+ AE+ S+ + EA
Sbjct: 513 NLDPSSCKSSHEKRHARVLSVD-SGTDVF---LSKSSAEIVNDTEKTMPTSKSDL---EA 565
Query: 546 RRGPAANQPGW-----------RGELQEEGAVGGAAEETGR----RDRSSSVRRTQAIRR 590
+ G N+ + ++ + G+AE+ RD S ++ + +
Sbjct: 566 KEGQMPNESNFLEFVSLLESINTSKMTASSQLNGSAEQNEESGLLRDNCSQEKKEEILEN 625
Query: 591 RHNAGSNPTPPASVMGSP-----------PSSLQEAQRGR--AASHSRALTLPSALHFAS 637
P+ +S G P P+ Q A+ + R + S
Sbjct: 626 E-----KPSGHSSKQGKPDLQSQDHTSTGPACTQPAKTTAFFQGNRQRQIIYRVTSQQDS 680
Query: 638 SLLLTRAGANVHEACTFDDTSEGAVHYFYDESGVRRSYTFGLAGGGYENPVGQ--QGEQT 695
S+L +G E ++ S A+H F DE G RS + +G E P+
Sbjct: 681 SVLQVISGP---ETSVQEEISVDAMHVFIDEHGEIRS-CYLKSGNQKEGPLQPLPSNNDC 736
Query: 696 ANGAWDRHSHSSSFHSADVPEATGGLNLLQPRPVVLQGMQVRRVPLEIPEEQTLMEEAPP 755
+ A + SSS +++ + + G + L M RR E P + EA
Sbjct: 737 LSQAREMQVSSSSTTTSESQDPSSGDPAVSALQQQLLLMVARRTQSETPRHVSQDLEASS 796
Query: 756 --------RAQHSYKYWLLPGRWTSVRYERLALLALLDRTRGVLENIFGVGLSSLVAFLG 807
+ YK+ + PG+W V Y+RL LLALLDRT + EN+ + L LV+ LG
Sbjct: 797 CSSTQGKFNREQFYKFIIFPGKWIKVWYDRLTLLALLDRTEDIKENVLAILLIVLVSLLG 856
Query: 808 YLLLLKGFFTDIWVFQFCLVIASCQYSLLKSVQPDAASPMHGHNWVIAYSRPVYFCICCL 867
+L L +GF D+WV FCLV+ASCQYSLLKSVQPD ASP+HGHN +I YSRP+YFC+ C
Sbjct: 857 FLTLSQGFCKDMWVLLFCLVMASCQYSLLKSVQPDPASPIHGHNQIITYSRPIYFCVLCG 916
Query: 868 LIWLLDALGSAQPFPPVSLYGLTLFSASFFFCARDVATVFTLCFPFVFLLGLLPQVNTCL 927
LI LLD A+ P +YGL LFS F ARD VF CFP + LLGL PQ+NT
Sbjct: 917 LILLLDTGAKARHPPSYVVYGLKLFSPVFLQSARDYLIVFLYCFPAISLLGLFPQINTFC 976
Query: 928 MYLLEQIDMHGFGGTAATSPLTAVFSLSRSLLAAALLYGFCLGAIKTPWPEQHVPVLFSV 987
YLLEQIDM FGG+A + +AV+S++RS+LAAALL+ C A+K PW QH+P LFS
Sbjct: 977 TYLLEQIDMLFFGGSAVSGITSAVYSVARSVLAAALLHAVCFSAVKEPWSMQHIPALFSA 1036
Query: 988 FCGLLVALSYHLSRQSSDPTVLWSLIRSKLFPELEERSLETARAEPPDPLPDKMRQSVRE 1047
FCGLLVALSYHLSRQSSDP+VL S I+ +LFP+ ++L + A DPLP KM+ SV +
Sbjct: 1037 FCGLLVALSYHLSRQSSDPSVLMSFIQCRLFPKFLHQNLAESAA---DPLPKKMKDSVTD 1093
Query: 1048 VLHSDLVMCVVIAVLTFAISASTVFIALKSVLGFVLYALAGAVGFFTHYLLPQLRKQLPW 1107
VL DL++C V+AVL+FA+SASTVF++L+ L VL+ALAGAVGF THY+LPQLRK PW
Sbjct: 1094 VLKWDLIVCAVVAVLSFAVSASTVFLSLRPFLSIVLFALAGAVGFVTHYVLPQLRKHHPW 1153
Query: 1108 FCLSQPVLKPLEYSQYEVRGAAQVMWFEKLYAGLQCVEKYLIYPAVVLNALTVDAHTVVS 1167
+S P+LK EY Q EVR A +MWFE+LY LQC EKY++YPA++LNALT+DA + +
Sbjct: 1154 MWISHPILKNKEYHQREVRDVAHLMWFERLYVWLQCFEKYILYPALILNALTIDAFLISN 1213
Query: 1168 HPDKYCFYCRALLMTVAGLKLLRSAFCCPPQQYLTLAFTVLLFHFDYPRLSQGFLLDYFL 1227
H + + LM +AG+KLLR++FC P Q++ L+FTV+ FHFDY +S+ FLLD+F+
Sbjct: 1214 HR-RLGTHWDIFLMIIAGMKLLRTSFCNPVYQFINLSFTVIFFHFDYKDISESFLLDFFM 1272
Query: 1228 MSLLCSKLWDLLYKLRFVLTYIAPWQITWGSAFHAFAQPFAVPHSAMLFVQALLSGLFST 1287
+S+L SKL DLL+KL+FVLTY+APWQ+ WGS+FH FAQ FA+PHSAMLF Q + + +FST
Sbjct: 1273 VSILFSKLGDLLHKLQFVLTYVAPWQMAWGSSFHVFAQLFAIPHSAMLFFQTIATSIFST 1332
Query: 1288 PLNPLLGSAVFIMSYARPLKFWERDYNTKRVDHSNTRLVTQLDRNPGADDNNLNSIFYEH 1347
PL+P LGS +FI SY RP+KFWE++YNT+RVD+SNTRL Q++R+PG DDNNLNSIFYEH
Sbjct: 1333 PLSPFLGSVIFITSYVRPVKFWEKNYNTRRVDNSNTRLAVQIERDPGNDDNNLNSIFYEH 1392
Query: 1348 LTRSLQHTLCGDLVLGRWGNYGPGDCFVLASDYLNALVHLIEVGNGLVTFQLRGLEFRGT 1407
LTR+LQ +LCGDLVLGRWGNY GDCF+LASD LNA VHLIE+GNGLVTFQLRGLEFRGT
Sbjct: 1393 LTRTLQESLCGDLVLGRWGNYSSGDCFILASDDLNAFVHLIEIGNGLVTFQLRGLEFRGT 1452
Query: 1408 YCQQREVEAITEGVEEDEGCCCCEPGHLPRVLSFNAAFGQRWLAWEVTASKYVLEGYSIS 1467
YCQQREVEAI EG EED GCCCC+PGHLP +LS NAAF RWL WE+T ++Y+LEGYSI
Sbjct: 1453 YCQQREVEAIMEGDEEDRGCCCCKPGHLPHLLSCNAAFHLRWLTWEITQTQYILEGYSIL 1512
Query: 1468 DNNAASMLQVFDLRKILITYYVKSIIYYVSRSPKLEVWLSHEGITAALRPVRVPGYADSD 1527
DNNAA+MLQVFDLR+ILI YY+KSIIYY+ SPKL W+ +E + +L+P Y + D
Sbjct: 1513 DNNAATMLQVFDLRRILIRYYIKSIIYYMVTSPKLLSWIKNESLLKSLQPFAKWHYIERD 1572
Query: 1528 -PTFSLSVDEDYDLRLSGLSLPSFCAVHLEWIQYCASRRSQP---VDQDWNSPLVTLCFG 1583
F++++D+DY L G++ SFC V+LEWIQ+CA +R +P +D D +SPLVTL F
Sbjct: 1573 LAMFNINIDDDYVPCLQGITRASFCNVYLEWIQHCARKRQEPSTTLDSDEDSPLVTLSFA 1632
Query: 1584 LCVLGRRALGTASHSMSASLEPFLYGLHALFKGDFRITSPRDEWVFADMDLLHRVVAPGV 1643
LC LGRRALGTA+H+M+ SL+ FLYGLH LFKGDFRIT+ RDEWVFADMDLLH+VVAP +
Sbjct: 1633 LCTLGRRALGTAAHNMAISLDSFLYGLHVLFKGDFRITA-RDEWVFADMDLLHKVVAPAI 1691
Query: 1644 RMALKLHQDHFTSPDEYEEPAALYDAIAANEERLVISHEGDPAWRSAILSNTPSLLALRH 1703
RM+LKLHQD FT PDEYE+PA LY+AI + E+++VI HEGDPAWR A+LSN LL LRH
Sbjct: 1692 RMSLKLHQDQFTCPDEYEDPAVLYEAIQSFEKKVVICHEGDPAWRGAVLSNKEELLTLRH 1751
Query: 1704 VLDDASDEYKIIMLNRRHLSFRVIKVNRECVRGLWAGQQQELVFLRNRNPERGSIQNAKQ 1763
V+D+ +DEYK+IML+R LSF+VIKVN+ECVRGLWAGQQQEL+FLRNRNPERGSIQN KQ
Sbjct: 1752 VVDEGADEYKVIMLHRSFLSFKVIKVNKECVRGLWAGQQQELIFLRNRNPERGSIQNNKQ 1811
Query: 1764 ALRNMINSSCDQPLGYPIYVSPLTTSLAGSHPQLRALWGGPISLGAIAHWLLRTWERLHK 1823
LRN+INSSCDQPLGYP+YVSPLTTS G+H QL+ +WGGPI+L I W W R+ K
Sbjct: 1812 VLRNLINSSCDQPLGYPMYVSPLTTSYLGTHRQLKNIWGGPITLDRIRTWFWTKWVRMRK 1871
Query: 1824 GCGAGCNSGGNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSL 1883
C A +SGGN++D D GGG T+ NN P+ + + +QP G G S
Sbjct: 1872 DCNARQHSGGNIEDVD--GGGAPTTGGNNA----PSGGSQESSAEQPRKGGAQHGVSSCE 1925
Query: 1884 SGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGP 1932
GR Q + + RPP +LSS GP
Sbjct: 1926 GTQRTGRRKGRSQ-------------SVQAHSALSQRPP---MLSSSGP 1958
>gi|145580590 hepatitis C virus F protein-binding protein 2 [Homo
sapiens]
Length = 938
Score = 67.4 bits (163), Expect = 1e-10
Identities = 51/150 (34%), Positives = 69/150 (46%), Gaps = 3/150 (2%)
Query: 1635 LHRVVAPGVRMALKLHQDHFTSPDEYEEPAALYDAIAANEERLVISHEGDPAWRSAILSN 1694
L ++ R LKL D S E+ L + E I D W+ AIL
Sbjct: 784 LFQLALKAFRYTLKLMIDK-ASLGPIEDFRELIKYLEEYERDWYIGLVSDEKWKEAILQE 842
Query: 1695 TPSLLALRHVLDDASDEYKIIMLNRRHLSFRVIKVNRECVRGLWAGQQQELVFLRNRNPE 1754
P L +L + D Y +L+ + L +V K+N E VRG WA EL++ N + E
Sbjct: 843 KPYLFSLGY--DSNMGIYTGRVLSLQELLIQVGKLNPEAVRGQWANLSWELLYATNDDEE 900
Query: 1755 RGSIQNAKQALRNMINSSCDQPLGYPIYVS 1784
R SIQ LRN+ + + PLGYPIY S
Sbjct: 901 RYSIQAHPLLLRNLTVQAAEPPLGYPIYSS 930
Score = 45.1 bits (105), Expect = 7e-04
Identities = 49/236 (20%), Positives = 85/236 (36%), Gaps = 33/236 (13%)
Query: 1272 SAMLFVQALLSGLFSTPLNPLLGSAVFIMSYARPLKFWERDYNTKRVDHSNTRLVTQLDR 1331
S + V + S L S+PL PL VF++ + RP++ W
Sbjct: 339 SPFVLVIIVFSTLLSSPLLPLFTLPVFLVGFPRPIQSW---------------------- 376
Query: 1332 NPGADDNN----LNSIFYEHLTRSLQHTLCGDLVLGRWGNYGPGDCFVLASDYLNALVHL 1387
PGA ++++Y + L L + G G PG ++ + +
Sbjct: 377 -PGAAGTTACVCADTVYYYQMVPRLTAVLQTAMAAGSLGLLLPGSHYLGRFQDRLMWIMI 435
Query: 1388 IEVGNGLVTFQLRGLEFRGTYCQQREVEAITEGVEEDEGCCCCEPGHLPRVLSFNAAFGQ 1447
+E G + ++GLE + T C E + E E+ RV S N FG
Sbjct: 436 LECGYTYCSINIKGLELQETSCHTAEARRVDEVFED------AFEQEYTRVCSLNEHFGN 489
Query: 1448 RWLAWEVTASKYVLEGYSISDNNAASMLQVFDLRKILITYYVKSIIYYVSRSPKLE 1503
V K + ++ S + + + LI V ++ Y S+ P ++
Sbjct: 490 VLTPCTVLPVKLYSDARNVLSGIIDSHENLKEFKGDLIKVLVWILVQYCSKRPGMK 545
Score = 31.6 bits (70), Expect = 8.3
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 912 PFVFLLGLLPQVNTCLMYLLEQIDMHGFGGTAATS--PLTAVFSLSRSLLAAALLYGFCL 969
PF++ LG LP + L++ +EQ+ G GG++ ++ L +F +S A+ +
Sbjct: 19 PFLWALGTLPPPDALLLWAMEQVLEFGLGGSSMSTHLRLLVMFIMSAGTAIASYFIPSTV 78
Query: 970 GAI 972
G +
Sbjct: 79 GVV 81
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 63.5 bits (153), Expect = 2e-09
Identities = 101/394 (25%), Positives = 137/394 (34%), Gaps = 52/394 (13%)
Query: 196 LPQTP-PGAVPDPSLASTDSSEPSPLAGDGAP---WSGSSMADTPMSPLLKGSLSQELSK 251
+P +P P P P A+ PSP G P W+ + A TP SP KG + K
Sbjct: 930 IPASPSPKGAPTPPAATP----PSPKGGPATPSPKWAPTPPAATPPSP--KGGPATPSPK 983
Query: 252 SFLTLTQPDRALVRTSSRREQRRGAG---GYQPLDRRGSGEPTPQKAGSSDSCFS----- 303
T + +GA P +GS TP G+S +
Sbjct: 984 GAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSP 1043
Query: 304 -GTDRETLSSFKSEKTNSTHLDSPPGGPAPEGSDTDPPSEAELPASPDAGVPSDDTLRSF 362
G+ T + T + L SP GGPA P A P SP G + +
Sbjct: 1044 KGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGA- 1102
Query: 363 DTVIGAGTPP----GLAEPLLVVRPKDLALLRPSKR-----QPPLRRHSPPGRAPRRPLL 413
+ A TPP GLA P P A PS + PP + P P P
Sbjct: 1103 -PMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPK- 1160
Query: 414 EGGGFFEDEDTSEGSELSPASSLRSQR----RYSTDSSSSTSCYSPESSRGAAGGPRKRR 469
GG +G+ +PA++ S + S + +T +P S +G P
Sbjct: 1161 --GGLATPPP--KGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATP---- 1212
Query: 470 APHGAEEGTAVPPKRPYGTQRTPSTASAKTHARVLSMDGAGGDVLRPPL------AGCKA 523
+P GA A P P G TPS A T GG PP A
Sbjct: 1213 SPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPP 1272
Query: 524 ELEAQVGV---EQAASEPVVLPAEARRGPAANQP 554
L+ + + A + VV P + GPA + P
Sbjct: 1273 SLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPP 1306
Score = 48.1 bits (113), Expect = 9e-05
Identities = 53/188 (28%), Positives = 71/188 (37%), Gaps = 26/188 (13%)
Query: 1850 SNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPAS 1909
++ PP A P P PLP G P ++L G P L+ P PP A+
Sbjct: 1032 ASTPPAATP-PSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPT----PPAAT 1086
Query: 1910 -PIPTEGPRTSRPPG---PGLLSSEGPSGKWSLGGRKGLGGSDGEPAS--GSPKGG---T 1960
P P GP T P G P + P G + K G+ PA+ SPKGG
Sbjct: 1087 PPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHK---GAPTTPAATPPSPKGGLATP 1143
Query: 1961 PKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTPMGALGDWPAPIEE 2020
P AP + + SP PP+ + P +P+ G P+P
Sbjct: 1144 PPKGAP---TTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLAT------PSPKGA 1194
Query: 2021 RESPAAQP 2028
+PAA P
Sbjct: 1195 PTTPAATP 1202
Score = 47.8 bits (112), Expect = 1e-04
Identities = 106/446 (23%), Positives = 150/446 (33%), Gaps = 59/446 (13%)
Query: 201 PGAVPDPSLASTDSSEPSPLAGDGAPWSGSSMADTPMSPLL-----KGSLSQELSKSFLT 255
P +VP PSL + P DG + S++A SP G+ + SK LT
Sbjct: 731 PKSVPSPSLPPA-GTPPGTKKVDGISHT-SALAPVASSPKECPTEDSGASATASSKGTLT 788
Query: 256 LTQPDRALVRTSSRREQRRGAGGYQPLDRRGSGEP-TPQKAGSSDSCFSGTDRETLS--- 311
+ + S + +R P ++GS P TP G+ S S + L
Sbjct: 789 YLADSPSPLGVSVSPQTKR------PPTKKGSAGPDTP--IGNLSSPVSPVEASFLPENS 840
Query: 312 -SFKSEKTN--STHLDSPPGGPAPEGSDTDPPSEAELPASPDAGVPSDDTLRSFDTVIGA 368
SF+ K + +TH +PP +P+G+ P A P SP GV +V+
Sbjct: 841 LSFQGSKDSPATTHSPTPP---SPKGA---PTPSAVTPLSPK-GVTLPPKETPTPSVVNL 893
Query: 369 GTPP-GLAEPLLVVRPKDLALLRPSKRQPPLRRHSP-PGRAPRRPLLEGGGFFEDEDTSE 426
P G A P PK L + P R +P P P P + +
Sbjct: 894 PFPKEGPATPA----PKQAPALSMTSSSPKKARATPAPKGIPASP------------SPK 937
Query: 427 GSELSPASSLRSQRRYSTDSSSSTSCYSPESSRGAAGGPRKRRAPHGAEEGTAVPPKRPY 486
G+ PA++ S + S + P ++ + G +P GA A P P
Sbjct: 938 GAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPK 997
Query: 487 GTQRTPSTASAKTHARVLSMDGAGGDVLRPPLAGCKAELEAQVGVEQAASEPVVLPAEAR 546
G TPS A T V G P G A + + LP A
Sbjct: 998 GGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAP 1057
Query: 547 RGPAANQPGWRGELQEEGAVGGAAEETGRRDRSSSVRRTQAIRRRHNAGSNPTPPASVMG 606
PAA P +G G T + + P PPA+
Sbjct: 1058 TTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPK------GAPMPPAATPP 1111
Query: 607 SPPSSLQEAQRGRAASHSRALTLPSA 632
SP L H A T P+A
Sbjct: 1112 SPKGGL------ATPPHKGAPTTPAA 1131
Score = 46.2 bits (108), Expect = 3e-04
Identities = 87/387 (22%), Positives = 142/387 (36%), Gaps = 73/387 (18%)
Query: 197 PQTPPGAVPDP----SLASTDSSEPSPLAGDGAP---WSGSSMADTPMSPLLKGSLSQEL 249
P +P G + P + + ++ PSP G P + ++ A TP SP KG L+
Sbjct: 1110 PPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSP--KGGLATPP 1167
Query: 250 SKSFLTL---TQPD-RALVRTSSRREQRRGAGGYQPLDRRGSGEPTPQKAGSSDSCFSGT 305
K T T P + + T S + P + G P+P+ A ++ + +
Sbjct: 1168 PKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPS 1227
Query: 306 DRETLSSFKSEKTNSTHLDSPP---GGPA---PEGSDTDPPS-----EAELPASPDAGVP 354
+ L++ + +T +PP GGPA P+G+ T P + + L P G P
Sbjct: 1228 PKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAP 1287
Query: 355 SDDTLRSFDTVIGAGTPPGLAEPLLVVRPKDLALLRPSKRQPPLRRHS----PPGRAPRR 410
+ + G T P P P PP + S PP AP
Sbjct: 1288 NPAVVTPPSPKGGPATSPPKGAP------------TPPAATPPSPKGSPGTPPPKGAPTP 1335
Query: 411 PLLEGGGFFEDEDTSEGSELSPASSLRSQRRYSTDSSSSTSCYSPESSRGAAGGPRKRRA 470
P + + +G+ PA++ S + T SS P ++ GGP
Sbjct: 1336 PAV-------TPPSPKGTPTLPATT-PSSKGGPTTPSSKEGPTPPAATPSHKGGP--AMT 1385
Query: 471 PHGAEEGTAVPPKRPYGTQRTPST---ASAKTHARVLSMDGAGGDVLRPPLAGCKAELEA 527
P + G A+P P G +P+ + K A ++ +GA K +L
Sbjct: 1386 PPSPKRGPAIP--SPKGDPTSPAVIPLSPKKAPATPVTREGAA--------TPSKGDL-- 1433
Query: 528 QVGVEQAASEPVVLPAEARRGPAANQP 554
+ P V P ++ PA + P
Sbjct: 1434 --------TPPAVTPVSLKKAPATSAP 1452
Score = 43.5 bits (101), Expect = 0.002
Identities = 103/449 (22%), Positives = 150/449 (33%), Gaps = 67/449 (14%)
Query: 192 LIGDLPQTPPGAVPDPSLASTDSSEPSPLAGD--GAPWSGSSMADTPMSPLLKGSLSQEL 249
L G L P P+P++ + S + P GAP + A TP SP KGS
Sbjct: 1274 LKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAP---TPPAATPPSP--KGSPGTPP 1328
Query: 250 SKSFLT---LTQPDRALVRTSSRREQRRGAGGYQPLDRRGSGEPTPQKAGSSDSCFSGTD 306
K T +T P T G P + G PTP A S G
Sbjct: 1329 PKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEG---PTPPAATPSHK---GGP 1382
Query: 307 RETLSSFKSEKTNSTHLDSPPGGPAPEGSDTDPPSEAELPASPDAGVPSDDTLRSF---- 362
T S P GPA DP S A +P SP + T
Sbjct: 1383 AMTPPS-------------PKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPS 1429
Query: 363 --DTVIGAGTPPGLAEPLLVVRPKDLALLRPSKRQPPLRRHSPPGRAPRRPLLEGGGFFE 420
D A TP L + PK SK P L +PP +P+ P +
Sbjct: 1430 KGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPP--SPKEPPAP-----K 1482
Query: 421 DEDTSEGSELSPASSLRSQRRYSTDSSSSTSCYSPESSRGAAGGPRKRRAPHGAEEGTAV 480
TS + +PA+ + + + P S + P RR P +
Sbjct: 1483 QVATSSSPKKAPATP-------APMGAPTLPAVIPSSPKEVPATPSSRRDP--------I 1527
Query: 481 PPKRPYGTQRTPSTASAKTHARVLSMDGAGGDVLRPPLAGCKAELEAQVGVEQAASEPVV 540
P +++TP+T + K +M + P E A ++A+S P V
Sbjct: 1528 APTATLLSKKTPATLAPKEALIPPAMTVPSPK--KTPAIPTPKEAPATPSSKEASSPPAV 1585
Query: 541 LPAEARRGPAANQ----PGWRGELQEEG----AVGGAAEETGRRDRSSSVRRTQAIRRRH 592
P+ + P+ + P +E AV + E G + T
Sbjct: 1586 TPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPS 1645
Query: 593 NAGSNPTPPASVMGSPPSSLQEAQRGRAA 621
+ +PT PASV +++ +A +G A
Sbjct: 1646 SLKDSPTSPASVTCKMGATVPQASKGLPA 1674
Score = 42.7 bits (99), Expect = 0.004
Identities = 49/179 (27%), Positives = 67/179 (37%), Gaps = 21/179 (11%)
Query: 1853 PPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPAS--P 1910
PP A TP + G P P P W P + + P P P+ PPA+ P
Sbjct: 942 PPAA--TPPSPKGG---PATPSPKWAPTPPAATPPSPKGGPAT--PSPKGAPTPPAATPP 994
Query: 1911 IPTEGPRTSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPAS--GSPKGGTPKSQAPL 1967
P GP T P G P + PS K S G+ PA+ SPKG + P
Sbjct: 995 SPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPK 1054
Query: 1968 DLSLSLSLSL--------SPDVSTEASPPRASQDIPCLDSSAPE-SGTPMGALGDWPAP 2017
+ + +L +P + +PP A+ P + P G PM P+P
Sbjct: 1055 GAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSP 1113
Score = 42.7 bits (99), Expect = 0.004
Identities = 44/171 (25%), Positives = 60/171 (35%), Gaps = 35/171 (20%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPR 1901
GG S P TP + G P P G P ++ G P PP
Sbjct: 1207 GGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATP----PPKG 1262
Query: 1902 LPGPPPASPIPTEGPRTSRP----PGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPK 1957
P PP A+P +G + P P P +++ P G PA+ PK
Sbjct: 1263 APTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPK---------------GGPATSPPK 1307
Query: 1958 GG-TPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTP 2007
G TP + P SP S PP+ + P + +P+ GTP
Sbjct: 1308 GAPTPPAATP----------PSPKGSPGTPPPKGAPTPPAVTPPSPK-GTP 1347
Score = 42.4 bits (98), Expect = 0.005
Identities = 50/188 (26%), Positives = 68/188 (36%), Gaps = 16/188 (8%)
Query: 1846 LTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGP 1905
L+ S++P A TP G P P G P ++ G P +W P
Sbjct: 911 LSMTSSSPKKARATPA-PKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAAT 969
Query: 1906 PPASPIPTEGPRTSRP---PGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPK 1962
PP+ P GP T P P P + P G + KG + SPKG
Sbjct: 970 PPS---PKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKG-APTPPAVTPPSPKGSPAA 1025
Query: 1963 SQAPLDLSL-SLSLSLSPDVSTEASP-PRASQDIPCLDSSAPESGTPMGALGDWPAPIEE 2020
+ P S + SP S A+P P+ + P +P+ G +L P P
Sbjct: 1026 TPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTP--- 1082
Query: 2021 RESPAAQP 2028
PAA P
Sbjct: 1083 ---PAATP 1087
Score = 41.6 bits (96), Expect = 0.008
Identities = 56/191 (29%), Positives = 77/191 (40%), Gaps = 33/191 (17%)
Query: 1841 SGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPP 1900
S GG T+ S+ P + G PP P GP + S GD P ++ P
Sbjct: 1355 SSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGP-AIPSPKGDPTSPAVI----P 1409
Query: 1901 RLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGG- 1959
P PA+P+ EG T P G L+ P + +K PA+ +PKGG
Sbjct: 1410 LSPKKAPATPVTREGAAT---PSKGDLT---PPAVTPVSLKKA-------PATSAPKGGP 1456
Query: 1960 -TPKSQAPLDLSLSLSLSLSPDVSTEASPPR--ASQDIPCLDSSAPESGTPMGALGDWPA 2016
TP S+ L +++P E P+ A+ P AP + PMGA PA
Sbjct: 1457 ATPSSKGDPTLP-----AVTPPSPKEPPAPKQVATSSSP---KKAPATPAPMGA-PTLPA 1507
Query: 2017 --PIEERESPA 2025
P +E PA
Sbjct: 1508 VIPSSPKEVPA 1518
Score = 40.0 bits (92), Expect = 0.023
Identities = 46/190 (24%), Positives = 63/190 (33%), Gaps = 13/190 (6%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPR 1901
GG SL P TP + G P P G P ++ G P P
Sbjct: 1069 GGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATP----PHKG 1124
Query: 1902 LPGPPPASPIPTEGPRTSRPP--GPGLLSSEGPSGKWSLGGRKGLGGSDGEPAS-GSPKG 1958
P P A+P +G + PP P ++ PS K L G A+ SPKG
Sbjct: 1125 APTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKG 1184
Query: 1959 GTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTPMGALGDWPAPI 2018
G + + SP P+ + P +P+ G P+P
Sbjct: 1185 GLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLAT------PSPK 1238
Query: 2019 EERESPAAQP 2028
+PAA P
Sbjct: 1239 GAPTTPAATP 1248
Score = 37.0 bits (84), Expect = 0.20
Identities = 55/202 (27%), Positives = 66/202 (32%), Gaps = 37/202 (18%)
Query: 1843 GGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRL 1902
GG TS PP PTP PP P P G PPP PP +
Sbjct: 1299 GGPATS----PPKGAPTPPAAT-------PPSPKGSP---------GTPPPKGAPTPPAV 1338
Query: 1903 PGPPPASPIPTEGPRTSRPPGPGLLSS-EGPSGKWSLGGRKG-----LGGSDGEPASGSP 1956
P P S GP SS EGP+ + KG PA SP
Sbjct: 1339 TPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSP 1398
Query: 1957 KGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLD----SSAPESGTPMG--- 2009
K G P S A + LS + + A+P + P + AP + P G
Sbjct: 1399 K-GDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPA 1457
Query: 2010 ---ALGDWPAPIEERESPAAQP 2028
+ GD P SP P
Sbjct: 1458 TPSSKGDPTLPAVTPPSPKEPP 1479
Score = 33.1 bits (74), Expect = 2.8
Identities = 71/351 (20%), Positives = 116/351 (33%), Gaps = 52/351 (14%)
Query: 199 TPPGAVP-----DPSLASTDSSEPSPLAGDGAPWSGS--SMADTPMSPLLKGSLSQELSK 251
T P +P P+ T +P GD P + + S+ P + KG + SK
Sbjct: 1403 TSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSK 1462
Query: 252 SFLTLTQPDRALVRTSSRREQRRGAGGYQPLDRRGSGEPTPQKAGSSDSCFSGTDRET-- 309
TL A+ S + ++ P P A + + + +E
Sbjct: 1463 GDPTLP----AVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPA 1518
Query: 310 -----------LSSFKSEKTNSTHLDS----PPGGPAPEGSDTDP-PSEAELPASPDAGV 353
++ S+KT +T PP P T P+ E PA+P +
Sbjct: 1519 TPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKE 1578
Query: 354 PSDDTLRSFDTVIGAGTPPGLAEPLLVVRPKDLALLRPSKRQPPLRRHSPPGRAPRRPLL 413
S + T GA +P L P V P P PP P AP+
Sbjct: 1579 ASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPK---- 1634
Query: 414 EGGGFFEDEDTSEGSELSPASSLRSQRRYSTDSSSSTSCYSPESSRGAAGGPRKRRAPHG 473
G+ SP + S + S S +S +C + A+ G ++ P
Sbjct: 1635 -------------GTPTSPPVT-PSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTA 1680
Query: 474 AEEGTAVP-----PKRPYGTQRTPSTASAKTHARVLSMDGAGGDVLRPPLA 519
+E P P T++ P T + + + D + + + PL+
Sbjct: 1681 LKEVLVAPAPESTPIITAPTRKGPQTKKSSATSPPICPDPSAKNGSKGPLS 1731
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 58.2 bits (139), Expect = 8e-08
Identities = 62/196 (31%), Positives = 73/196 (37%), Gaps = 28/196 (14%)
Query: 1850 SNNPPVAHPT--PENTAGNGDQPL--PPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGP 1905
S PP A P+ P A G P P GP GP + SG PPP +P P +PGP
Sbjct: 51 SGLPPSATPSTVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSGPSCPPPGGPYPAPTVPGP 110
Query: 1906 PPASPIPTEG---PRTSRPPG-PGLLSSEGPSGKW----SLGGRKGLGGSDGEP----AS 1953
P P PT P RP G P ++ GP G W S G+GG P S
Sbjct: 111 GPTGPYPTPNMPFPELPRPYGAPTDPAAAGPLGPWGSMSSGPWAPGMGGQYPTPNMPYPS 170
Query: 1954 GSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTPMGALGD 2013
P P QAP +P V PP A P AP P L
Sbjct: 171 PGPYPAPPPPQAP---------GAAPPVPWGTVPPGAWG--PPAPYPAPTGSYPTPGLYP 219
Query: 2014 WPA-PIEERESPAAQP 2028
P+ P + P+ P
Sbjct: 220 TPSNPFQVPSGPSGAP 235
Score = 34.7 bits (78), Expect = 0.98
Identities = 51/200 (25%), Positives = 67/200 (33%), Gaps = 34/200 (17%)
Query: 1848 SLSNNPPVAHPTPENTAGNGDQPLPPG--PG---WGPRSSLSGSGDGRPP---------- 1892
SL++ P P + N PP PG W S+ S G PP
Sbjct: 6 SLADALPEHSPAKTSAVSNTKPGQPPQGWPGSNPWNNPSAPSSVPSGLPPSATPSTVPFG 65
Query: 1893 --PLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGE 1950
P +P GPPP P P S PP P G + G G +
Sbjct: 66 PAPTGMYPSVPPTGPPPGPPAPFPPSGPSCPP---------PGGPYPAPTVPGPGPTGPY 116
Query: 1951 PASGSPKGGTPKSQ-APLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTPMG 2009
P P P+ AP D + + L +S S P A P + P P
Sbjct: 117 PTPNMPFPELPRPYGAPTDPAAAGPLGPWGSMS---SGPWA----PGMGGQYPTPNMPYP 169
Query: 2010 ALGDWPAPIEERESPAAQPL 2029
+ G +PAP + AA P+
Sbjct: 170 SPGPYPAPPPPQAPGAAPPV 189
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 57.4 bits (137), Expect = 1e-07
Identities = 55/201 (27%), Positives = 76/201 (37%), Gaps = 39/201 (19%)
Query: 1836 DDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLL 1895
D S G G T P+ T + AG Q PP G P+ G PPL
Sbjct: 425 DASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQG--PPLQ 482
Query: 1896 QWPPPRLP------GPPPASPIPTEGPR-TSRPPGPGLLSSEGPSGKWSLGGRKGLGGSD 1948
Q PPP+ GPP SP+P P TS P P ++ G+ G
Sbjct: 483 QRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQ----------GRQ 532
Query: 1949 GEPASGSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPE-SGTP 2007
P +G P G P ++ P SP +A PP+A++ + P+ SG P
Sbjct: 533 SRPVAGGP-GAPPAARPP----------ASPSPQRQAGPPQATRQTSVSGPAPPKASGAP 581
Query: 2008 MGALGDWPAPIEERESPAAQP 2028
G ++R+ P +P
Sbjct: 582 PGG--------QQRQGPPQKP 594
Score = 34.7 bits (78), Expect = 0.98
Identities = 40/147 (27%), Positives = 54/147 (36%), Gaps = 44/147 (29%)
Query: 1855 VAHPTPENTAG--------NGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPP 1906
V+ P P +G G PPGP GP S +G
Sbjct: 569 VSGPAPPKASGAPPGGQQRQGPPQKPPGPA-GPTRQASQAG------------------- 608
Query: 1907 PASPIPTEGPRTSRPPGPGLLSSEGPSG--KWSLGGRKGLGGSDGEPASGSPKGGTPKSQ 1964
P+P GP T++ P P S GP+G K L + D P + + GG P Q
Sbjct: 609 ---PVPRTGPPTTQQPRP---SGPGPAGRPKPQLAQKP---SQDVPPPATAAAGGPPHPQ 659
Query: 1965 APLDLSLSLSLSLSPDVSTEASPPRAS 1991
SL+ + +L E +PPR S
Sbjct: 660 LNKSQSLTNAFNL-----PEPAPPRPS 681
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 57.4 bits (137), Expect = 1e-07
Identities = 55/201 (27%), Positives = 76/201 (37%), Gaps = 39/201 (19%)
Query: 1836 DDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLL 1895
D S G G T P+ T + AG Q PP G P+ G PPL
Sbjct: 425 DASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQG--PPLQ 482
Query: 1896 QWPPPRLP------GPPPASPIPTEGPR-TSRPPGPGLLSSEGPSGKWSLGGRKGLGGSD 1948
Q PPP+ GPP SP+P P TS P P ++ G+ G
Sbjct: 483 QRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQ----------GRQ 532
Query: 1949 GEPASGSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPE-SGTP 2007
P +G P G P ++ P SP +A PP+A++ + P+ SG P
Sbjct: 533 SRPVAGGP-GAPPAARPP----------ASPSPQRQAGPPQATRQTSVSGPAPPKASGAP 581
Query: 2008 MGALGDWPAPIEERESPAAQP 2028
G ++R+ P +P
Sbjct: 582 PGG--------QQRQGPPQKP 594
Score = 39.7 bits (91), Expect = 0.030
Identities = 42/139 (30%), Positives = 57/139 (41%), Gaps = 31/139 (22%)
Query: 1841 SGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSG----SGDGRPP--PL 1894
+GG G + P A P+P+ AG P ++S+SG G PP
Sbjct: 537 AGGPGAPPAARPP--ASPSPQRQAGP--------PQATRQTSVSGPAPPKASGAPPGGQQ 586
Query: 1895 LQWPPPRLPGPP-------PASPIPTEGPRTSRPPGPGLLSSEGPSG--KWSLGGRKGLG 1945
Q PP + PGP A P+P GP T++ P P S GP+G K L +
Sbjct: 587 RQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRP---SGPGPAGRPKPQLAQKP--- 640
Query: 1946 GSDGEPASGSPKGGTPKSQ 1964
D P + + GG P Q
Sbjct: 641 SQDVPPPATAAAGGPPHPQ 659
Score = 39.3 bits (90), Expect = 0.040
Identities = 47/175 (26%), Positives = 59/175 (33%), Gaps = 18/175 (10%)
Query: 1853 PPVAHPTPENTAGNGDQP-------LPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGP 1905
PP P P+ P PP G G +S G G PP PP P P
Sbjct: 498 PPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAAR---PPASPSP 554
Query: 1906 PPASPIPTEGPRTS-RPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPKSQ 1964
+ P +TS P P S P G+ G + G G S G P++
Sbjct: 555 QRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTG 614
Query: 1965 APLDLSLSLSLSLSPDVSTEASPPRA---SQDIPCLDSSAPESGTPMGALGDWPA 2016
P S P + P A SQD+P ++A G P L PA
Sbjct: 615 PPTTQQPRPS---GPGPAGRPKPQLAQKPSQDVP-PPATAAAGGPPHPQLKASPA 665
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 56.6 bits (135), Expect = 2e-07
Identities = 55/162 (33%), Positives = 65/162 (40%), Gaps = 22/162 (13%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQPL---PPGPGWGPRSSLSGSGDGRPPPLLQWP 1898
G GGL + NP + P P+ G P PPGP P +L G G P P Q P
Sbjct: 1205 GDGGLPGIPGNPGL--PGPKGEPGFHGFPGVQGPPGPPGSPGPALEGP-KGNPGP--QGP 1259
Query: 1899 P--PRLPGPPPASPIPTEG--------PRTSRPPG-PGLLSSEGPSGKWSLGGRKGLGGS 1947
P P LPGP +P G P PG PGL +GP G GR GL G
Sbjct: 1260 PGRPGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGM 1319
Query: 1948 DGEPA-SGSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPP 1988
G+P G P G P + P + S P + PP
Sbjct: 1320 KGDPGLPGVP--GFPGMKGPSGVPGSAGPEGEPGLIGPPGPP 1359
Score = 47.0 bits (110), Expect = 2e-04
Identities = 53/168 (31%), Positives = 61/168 (36%), Gaps = 14/168 (8%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGW-GPRSSLSGSG-DGRPPPLLQWPPPRLPGPPPASPI 1911
P+ P G P PPG GP G G P P+ P LPG AS
Sbjct: 832 PIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGF 891
Query: 1912 P-TEGPR-TSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG-----GTPKS 1963
P T+G PPG PG L G SG L G GL G G P KG G P
Sbjct: 892 PGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGP 951
Query: 1964 QAPLDLSLSLSLSLSPDVSTEASP----PRASQDIPCLDSSAPESGTP 2007
P+D +L S + P P+ Q +P SG P
Sbjct: 952 PGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQP 999
Score = 46.6 bits (109), Expect = 2e-04
Identities = 40/120 (33%), Positives = 45/120 (37%), Gaps = 15/120 (12%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSG-------DGRPPPLLQWPPPRLPGPP 1906
PV + AGN QP PGP P +++ G GR + P LPG P
Sbjct: 630 PVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQP 689
Query: 1907 PASPIP-------TEGPRTSRPPGP-GLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
IP G PPGP G GP G GR GL G G P PKG
Sbjct: 690 GLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKG 749
Score = 42.4 bits (98), Expect = 0.005
Identities = 39/131 (29%), Positives = 45/131 (34%), Gaps = 7/131 (5%)
Query: 1833 GNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPP 1892
GN G G + P P N +GD LP PG + L G +
Sbjct: 641 GNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
Query: 1893 PLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKG-----LGGS 1947
P + P LPGPP P P PG + EGP G G KG L G
Sbjct: 701 PGI--PGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGP 758
Query: 1948 DGEPASGSPKG 1958
G P KG
Sbjct: 759 PGPPGLPGFKG 769
Score = 42.0 bits (97), Expect = 0.006
Identities = 40/135 (29%), Positives = 48/135 (35%), Gaps = 16/135 (11%)
Query: 1842 GGGGLTSLSNNPPV-AHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPP 1900
G G++ NP + P P G+ QP PPG P DG P P Q P
Sbjct: 1131 GPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQ------DGIPGPAGQKGEP 1184
Query: 1901 RLPG-----PPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGS 1955
PG PP + + P PG GP G+ G G+ G G P S
Sbjct: 1185 GQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPG 1244
Query: 1956 P----KGGTPKSQAP 1966
P G P Q P
Sbjct: 1245 PALEGPKGNPGPQGP 1259
Score = 40.0 bits (92), Expect = 0.023
Identities = 37/125 (29%), Positives = 41/125 (32%), Gaps = 10/125 (8%)
Query: 1828 GCNSGGNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSG 1887
GC+ G D S G G P E G P P GP GPR G
Sbjct: 31 GCSPGSKCDCSGIKGEKGERGF--------PGLEGHPGLPGFPGPEGPP-GPRGQKGDDG 81
Query: 1888 -DGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGG 1946
G P P PP LPG P +P P G+ G G+ G G G
Sbjct: 82 IPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG 141
Query: 1947 SDGEP 1951
G P
Sbjct: 142 LQGPP 146
Score = 40.0 bits (92), Expect = 0.023
Identities = 40/139 (28%), Positives = 48/139 (34%), Gaps = 37/139 (26%)
Query: 1865 GNGDQPLPPGPGW--GPRSSLSGSGDGRPPPLLQWP-PPRLPGPPPASPIPTEGPRTSR- 1920
GN P PPG GP G PP L+ P PP LPGP + +GP+ +
Sbjct: 171 GNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKG 230
Query: 1921 ------PPGP--------------------GLLSSEGPSGKWSL-------GGRKGLGGS 1947
PPGP GL GP G + GG KG G
Sbjct: 231 EQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGE 290
Query: 1948 DGEPASGSPKGGTPKSQAP 1966
GEP G ++ P
Sbjct: 291 QGEPGKRGKPGKDGENGQP 309
Score = 40.0 bits (92), Expect = 0.023
Identities = 40/118 (33%), Positives = 45/118 (38%), Gaps = 17/118 (14%)
Query: 1865 GNGDQPLPPG-----PGWGPR---------SSLSGSGDGRPPPLLQWPPPRLPGPPPASP 1910
G+ P PPG PG G L G R P +Q PP LPGPP A+
Sbjct: 334 GDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPG-LPGPPGAAV 392
Query: 1911 IPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPKSQAPLD 1968
+ GP P G EGP G S+ G GL G G P P G P D
Sbjct: 393 MGPPGP-PGFPGERGQKGDEGPPG-ISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSD 448
Score = 39.3 bits (90), Expect = 0.040
Identities = 39/115 (33%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 1858 PTPENTAGNGDQPLPPGP-GWGPRSSLSG--SGDG-RPPPLLQWPP--------PRLPGP 1905
P + G P PPGP G RS + G DG + P L P P LPGP
Sbjct: 892 PGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGP 951
Query: 1906 P-PASPIPTEGPRTSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P P P PG PG+ GP G L G G G G+P P G
Sbjct: 952 PGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPG 1006
Score = 38.9 bits (89), Expect = 0.052
Identities = 36/106 (33%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRP------PPLLQWPP--PRLPGP 1905
P P P A G PPGP P +G P PP L P P LPGP
Sbjct: 381 PPGLPGPPGAAVMG----PPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGP 436
Query: 1906 P-PASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGE 1950
P PA P P PG S G G L G +G+ G G+
Sbjct: 437 PGPAGPHIPPSDEICEPGPPGPPGSPGDKG---LQGEQGVKGDKGD 479
Score = 38.5 bits (88), Expect = 0.068
Identities = 41/141 (29%), Positives = 48/141 (34%), Gaps = 23/141 (16%)
Query: 1842 GGGGLTSLSNNPPVAHPT-------PENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPL 1894
G GL + P + P+ PE G P PPG S+ GD PP +
Sbjct: 1321 GDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGI 1380
Query: 1895 LQWP----------PPRLPGP--PPASP----IPTEGPRTSRPPGPGLLSSEGPSGKWSL 1938
P P LPGP PP P +P R PGL G G
Sbjct: 1381 PGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1440
Query: 1939 GGRKGLGGSDGEPASGSPKGG 1959
G GL G G P + S G
Sbjct: 1441 PGPDGLQGPPGPPGTSSVAHG 1461
Score = 37.7 bits (86), Expect = 0.12
Identities = 35/95 (36%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 1867 GDQPLPPGPGWGPRSSLSGS-GDGRPPPLLQWPPPRLPGPPPASPIP--TEGPRTSRPPG 1923
G + P PG+ + GS GD P L P LPG P A P P T PPG
Sbjct: 1080 GPKGEPGLPGYPGNPGIKGSVGD---PGL-----PGLPGTPGAKGQPGLPGFPGTPGPPG 1131
Query: 1924 PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P +S GP G L G G G G P P G
Sbjct: 1132 PKGIS--GPPGNPGLPGEPGPVGGGGHPGQPGPPG 1164
Score = 36.2 bits (82), Expect = 0.34
Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Query: 1838 SDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQW 1897
S G G L P + PT E G+ +P PGP +L GS + P L
Sbjct: 916 SGVPGLKGDDGLQGQPGLPGPTGEK--GSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPG 973
Query: 1898 PPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDG 1949
P + GP +P + + PGL GP G L G+ GL G G
Sbjct: 974 IPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPG 1024
Score = 35.4 bits (80), Expect = 0.57
Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 28/124 (22%)
Query: 1853 PPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPP--LLQWPPPRLPGPPPASP 1910
P ++ P P G P PGP GP +G PP + + PP PG P
Sbjct: 414 PGISIPGPPGLDGQPGAPGLPGPP-GP------AGPHIPPSDEICEPGPPGPPGSPGDKG 466
Query: 1911 IPTE---------------GPRTSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPASG 1954
+ E G S PPG PGL GP G G+K G G+ +
Sbjct: 467 LQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQK---GEKGQAGAT 523
Query: 1955 SPKG 1958
PKG
Sbjct: 524 GPKG 527
Score = 35.4 bits (80), Expect = 0.57
Identities = 51/192 (26%), Positives = 66/192 (34%), Gaps = 42/192 (21%)
Query: 1867 GDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPP----------------PRLPGPPPASP 1910
G + LP PG GS G P +L +P P LPG P
Sbjct: 524 GPKGLPGIPGAPGAPGFPGS-KGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDG 582
Query: 1911 IP-TEGPR----------TSRPPG----PGLLSSEGPSGKWSLG--------GRKGLGGS 1947
+P GP+ PPG PGL + GP G G G +G+ G+
Sbjct: 583 LPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGN 642
Query: 1948 DGEPASGSPKGGTPKS-QAPLDLSLSLSLSLSPDVSTEASPPRASQ-DIPCLDSSAPESG 2005
G+P PKG ++ P L + DV P Q +P + S E G
Sbjct: 643 PGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPG 702
Query: 2006 TPMGALGDWPAP 2017
P L P P
Sbjct: 703 IPGIGLPGPPGP 714
Score = 35.4 bits (80), Expect = 0.57
Identities = 43/130 (33%), Positives = 51/130 (39%), Gaps = 15/130 (11%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGD-GRPPPLLQWPPP 1900
G G LS P + P P GN P PG GP GD G P P PP
Sbjct: 988 GDPGQPGLSGQPGL--PGPPGPKGNPGLPGQPGL-IGPPGLKGTIGDMGFPGPQGVEGPP 1044
Query: 1901 R---LPGPPPASPIPTE-----GPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPA 1952
+PG P + +P + P S PGL +G G G G+ GS G+P
Sbjct: 1045 GPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPG 1104
Query: 1953 -SGSPKGGTP 1961
G P GTP
Sbjct: 1105 LPGLP--GTP 1112
Score = 35.0 bits (79), Expect = 0.75
Identities = 40/143 (27%), Positives = 51/143 (35%), Gaps = 13/143 (9%)
Query: 1828 GCNSGGNVDDSDCSGGGGLTSLSNNP-PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGS 1886
GCN G + G G L P P P + G+ PGP P
Sbjct: 123 GCN--GTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPG 180
Query: 1887 GDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGG 1946
G P P P P P PP P P P G L+ +GP G+ G +GL G
Sbjct: 181 IQGLPGPT-GIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGE---KGEQGLQG 236
Query: 1947 SDGEPASGSPKGGTPKSQAPLDL 1969
G P G + + P+D+
Sbjct: 237 PPG------PPGQISEQKRPIDV 253
Score = 34.3 bits (77), Expect = 1.3
Identities = 46/168 (27%), Positives = 55/168 (32%), Gaps = 22/168 (13%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPG-PGW-GPRSSLSGSGDGRPPPLLQWPP 1899
G G L P P + G +P PG PG GP+ GD P L
Sbjct: 941 GSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSG--Q 998
Query: 1900 PRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGG 1959
P LPGPP P P PGL+ GP G G G G G P G
Sbjct: 999 PGLPGPPGPKGNP------GLPGQPGLI---GPPGLKGTIGDMGFPGPQGVEGPPGPSGV 1049
Query: 1960 TPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTP 2007
+ +P L + P +S +P L E G P
Sbjct: 1050 PGQPGSP---------GLPGQKGDKGDPGISSIGLPGLPGPKGEPGLP 1088
Score = 33.5 bits (75), Expect = 2.2
Identities = 38/123 (30%), Positives = 45/123 (36%), Gaps = 26/123 (21%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPP-----PA 1908
P+ P P G P PGP + G + LQ PP GPP
Sbjct: 193 PIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPP----GPPGQISEQK 248
Query: 1909 SPIPTEG-------PRTSRPPGP-GLLSSEGPSG-----KWSLG--GRKGLGGSDGEPAS 1953
PI E P PPGP G+ GP G K G G++G G DGE +
Sbjct: 249 RPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGE--N 306
Query: 1954 GSP 1956
G P
Sbjct: 307 GQP 309
Score = 32.0 bits (71), Expect = 6.3
Identities = 36/128 (28%), Positives = 43/128 (33%), Gaps = 35/128 (27%)
Query: 1858 PTPENTAGNGDQPLPPGPGWGPRS----SLSGS-GDGRPPPLLQWPPPRLPGPP------ 1906
P P+ G PPGP P L G GD P + P LPGP
Sbjct: 1035 PGPQGVEG------PPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLP 1088
Query: 1907 --PASP-------------IPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEP 1951
P +P +P +P PG + GP G + G G G GEP
Sbjct: 1089 GYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEP 1148
Query: 1952 ASGSPKGG 1959
P GG
Sbjct: 1149 ---GPVGG 1153
Score = 32.0 bits (71), Expect = 6.3
Identities = 36/122 (29%), Positives = 43/122 (35%), Gaps = 16/122 (13%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQP-LPPGPGWGPRSSLSGSGDGRPPPLLQWPPP 1900
G GL NP + + + G+ P LP PG + L G PP P
Sbjct: 1083 GEPGLPGYPGNPGI-----KGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPP----GPK 1133
Query: 1901 RLPGPP-----PASPIPTEGPRTSRPPGP-GLLSSEGPSGKWSLGGRKGLGGSDGEPASG 1954
+ GPP P P P G PGP G G G G+KG G G G
Sbjct: 1134 GISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPG 1193
Query: 1955 SP 1956
P
Sbjct: 1194 PP 1195
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 56.6 bits (135), Expect = 2e-07
Identities = 50/171 (29%), Positives = 65/171 (38%), Gaps = 16/171 (9%)
Query: 1851 NNPPVAHPTPENTAGNGDQPLPPGP--GWGPRSSLSGS-GDGRPPPLLQWPPPRLPGPPP 1907
+ PP A T GN P P P GP++S + S G P P Q P P
Sbjct: 325 SGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPS--- 381
Query: 1908 ASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPKSQAPL 1967
GP T++P P + S G G GG S +G G T S
Sbjct: 382 -------GPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVA 434
Query: 1968 DLSLSLSLSLS--PDVSTEA-SPPRASQDIPCLDSSAPESGTPMGALGDWP 2015
D ++LS S + S++A PP + P S P + P GA G P
Sbjct: 435 DSPAEVALSSSGGNNASSQALGPPSGPHNPPPSTSKEPSAAAPTGAGGVAP 485
Score = 33.9 bits (76), Expect = 1.7
Identities = 52/211 (24%), Positives = 69/211 (32%), Gaps = 62/211 (29%)
Query: 1824 GCGAGCNSGGNVDDSDCSGGGG----------------------LTSLSNN--------- 1852
G G G GG+ S+ S GGG L+S N
Sbjct: 398 GGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPAEVALSSSGGNNASSQALGP 457
Query: 1853 PPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIP 1912
P H P +T+ P G G GSG+ P L P LP PP+SP P
Sbjct: 458 PSGPHNPPPSTSKEPSAAAPTGAG----GVAPGSGNNSGGPSLLVP---LPVNPPSSPTP 510
Query: 1913 T------EGPRTSRPP----GPGLLSSEGPSGKWSLGGRKGLGGSDGEPAS--------- 1953
+ G + PP P + + E S S+ R + +P
Sbjct: 511 SFSDAKAAGALLNGPPQFSTAPEIKAPEPLSSLKSMAERAAISSGIEDPVPTLHLTERDI 570
Query: 1954 --GSPKGGTPKSQAPLDLS---LSLSLSLSP 1979
S +Q PL LS + LSL + P
Sbjct: 571 ILSSTSAPPASAQPPLQLSEVNIPLSLGVCP 601
Score = 32.0 bits (71), Expect = 6.3
Identities = 34/151 (22%), Positives = 53/151 (35%), Gaps = 22/151 (14%)
Query: 200 PPGAVPDPSLASTDSSEPSPLAGDGAPWSGSSMADTPMSPLLKGSLSQELSKSFLTLTQP 259
P A P +L S PS +G AP++ + P P + TQP
Sbjct: 344 PAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGP---------------STTQP 388
Query: 260 DRALVRTSSRREQRRGAGGYQPLDRRGSGEPTPQKAGSSD--SCFSGTDRETLSSFKSEK 317
V+ S G GG +G ++ G++ S + + E S
Sbjct: 389 RPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPAEVALSSSGGN 448
Query: 318 TNSTHLDSPPGGPAPEGSDTDPPSEAELPAS 348
S+ PP GP PPS ++ P++
Sbjct: 449 NASSQALGPPSGP-----HNPPPSTSKEPSA 474
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 56.2 bits (134), Expect = 3e-07
Identities = 62/207 (29%), Positives = 75/207 (36%), Gaps = 19/207 (9%)
Query: 1832 GGNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRP 1891
GG++ S S + SN PP+ PTP D+P PP P G R S+ P
Sbjct: 232 GGSIRQSPLSSS---SPFSNRPPLP-PTPSRALD--DKPPPPPPPVGNRPSIHREAVPPP 285
Query: 1892 PPLLQWPP-PRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGE 1950
PP PP P P P +S P P SRP P L S + + ++ L S
Sbjct: 286 PPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSST 345
Query: 1951 PASGSPKGGTPKSQAPLDL---------SLSLSLSLSPDVSTEASPPRASQDIPCLDSSA 2001
P SP P P + S L P VS S RA P L S
Sbjct: 346 PPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPS-- 403
Query: 2002 PESGTPMGALGDWPAPIEERESPAAQP 2028
SG G P +R S A P
Sbjct: 404 -RSGVDSPRSGPRPPLPPDRPSAGAPP 429
Score = 43.9 bits (102), Expect = 0.002
Identities = 65/234 (27%), Positives = 81/234 (34%), Gaps = 71/234 (30%)
Query: 1823 KGCGAGCNSGGNVDDSDCSGGGG-------------------------LTSLSN------ 1851
KG GAG GG GGGG L S +N
Sbjct: 63 KGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSG 122
Query: 1852 --NPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLL-QWPPPR------- 1901
PP+ P +T+ P P GPG P S G G P P + PPPR
Sbjct: 123 GSRPPLLPPGGRSTSAKPFSP-PSGPGRFPVPS-PGHRSGPPEPQRNRMPPPRPDVGSKP 180
Query: 1902 --LPGPPPASPIPTEGPRTSR--PPGPG--LLSSEGPSGKWSLGGRKGLGGSDGEPASGS 1955
+P P P++P P + +R PP PG S GP+ G R G+
Sbjct: 181 DSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNR------------GT 228
Query: 1956 PKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTPMG 2009
GG Q+PL S SP + PP S+ LD P P+G
Sbjct: 229 ALGGGSIRQSPLS-------SSSPFSNRPPLPPTPSR---ALDDKPPPPPPPVG 272
Score = 36.2 bits (82), Expect = 0.34
Identities = 64/282 (22%), Positives = 90/282 (31%), Gaps = 68/282 (24%)
Query: 1802 GGPISLGAIAHWLLRTWERLHKGCGAGCNSGGNVDDSDCSGGGGLTSLSNNPPVAH---- 1857
GGP LG + +L +SGG+ GG ++ +PP
Sbjct: 95 GGPPGLGGLFQ---AGMPKLRSTANRDNDSGGSRPPLLPPGGRSTSAKPFSPPSGPGRFP 151
Query: 1858 -PTPENTAGNGDQP---LPPGPGWGPRSSLSGSGDGRPPPLLQWP-----------PPRL 1902
P+P + +G + +PP PR + D PPP+ P P +
Sbjct: 152 VPSPGHRSGPPEPQRNRMPP-----PRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPV 206
Query: 1903 PG----------PPP---------------ASPIPTEGPRTSRPPGP----GLLSSEGPS 1933
PG PPP SP+ + P ++RPP P L + P
Sbjct: 207 PGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPP 266
Query: 1934 GKWSLGGRKGL-----------GGSDGEPASGSPKGGTPKSQAPLDLSLSLSLSLSPDVS 1982
+G R + P++ P + P S L P S
Sbjct: 267 PPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSS 326
Query: 1983 TEASPPRASQDIPCLDSSAPESGTPMGALGDWPAPIEERESP 2024
PR Q L SS P +P G G P P ER P
Sbjct: 327 GNDETPRLPQRNLSLSSSTPPLPSP-GRSGPLPPPPSERPPP 367
Score = 32.0 bits (71), Expect = 6.3
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPR----LPGPPPAS 1909
P+ P P + G+ + LP P RS + G PPL PP R P PPP S
Sbjct: 378 PLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPRPPL---PPDRPSAGAPPPPPPS 434
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 56.2 bits (134), Expect = 3e-07
Identities = 62/207 (29%), Positives = 75/207 (36%), Gaps = 19/207 (9%)
Query: 1832 GGNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRP 1891
GG++ S S + SN PP+ PTP D+P PP P G R S+ P
Sbjct: 232 GGSIRQSPLSSS---SPFSNRPPLP-PTPSRALD--DKPPPPPPPVGNRPSIHREAVPPP 285
Query: 1892 PPLLQWPP-PRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGE 1950
PP PP P P P +S P P SRP P L S + + ++ L S
Sbjct: 286 PPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSST 345
Query: 1951 PASGSPKGGTPKSQAPLDL---------SLSLSLSLSPDVSTEASPPRASQDIPCLDSSA 2001
P SP P P + S L P VS S RA P L S
Sbjct: 346 PPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPS-- 403
Query: 2002 PESGTPMGALGDWPAPIEERESPAAQP 2028
SG G P +R S A P
Sbjct: 404 -RSGVDSPRSGPRPPLPPDRPSAGAPP 429
Score = 43.9 bits (102), Expect = 0.002
Identities = 65/234 (27%), Positives = 81/234 (34%), Gaps = 71/234 (30%)
Query: 1823 KGCGAGCNSGGNVDDSDCSGGGG-------------------------LTSLSN------ 1851
KG GAG GG GGGG L S +N
Sbjct: 63 KGAGAGGGGGGFGGGGGFGGGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSG 122
Query: 1852 --NPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLL-QWPPPR------- 1901
PP+ P +T+ P P GPG P S G G P P + PPPR
Sbjct: 123 GSRPPLLPPGGRSTSAKPFSP-PSGPGRFPVPS-PGHRSGPPEPQRNRMPPPRPDVGSKP 180
Query: 1902 --LPGPPPASPIPTEGPRTSR--PPGPG--LLSSEGPSGKWSLGGRKGLGGSDGEPASGS 1955
+P P P++P P + +R PP PG S GP+ G R G+
Sbjct: 181 DSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPTPPPFPGNR------------GT 228
Query: 1956 PKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTPMG 2009
GG Q+PL S SP + PP S+ LD P P+G
Sbjct: 229 ALGGGSIRQSPLS-------SSSPFSNRPPLPPTPSR---ALDDKPPPPPPPVG 272
Score = 36.2 bits (82), Expect = 0.34
Identities = 64/282 (22%), Positives = 90/282 (31%), Gaps = 68/282 (24%)
Query: 1802 GGPISLGAIAHWLLRTWERLHKGCGAGCNSGGNVDDSDCSGGGGLTSLSNNPPVAH---- 1857
GGP LG + +L +SGG+ GG ++ +PP
Sbjct: 95 GGPPGLGGLFQ---AGMPKLRSTANRDNDSGGSRPPLLPPGGRSTSAKPFSPPSGPGRFP 151
Query: 1858 -PTPENTAGNGDQP---LPPGPGWGPRSSLSGSGDGRPPPLLQWP-----------PPRL 1902
P+P + +G + +PP PR + D PPP+ P P +
Sbjct: 152 VPSPGHRSGPPEPQRNRMPP-----PRPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPV 206
Query: 1903 PG----------PPP---------------ASPIPTEGPRTSRPPGP----GLLSSEGPS 1933
PG PPP SP+ + P ++RPP P L + P
Sbjct: 207 PGGPRQPSPGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPP 266
Query: 1934 GKWSLGGRKGL-----------GGSDGEPASGSPKGGTPKSQAPLDLSLSLSLSLSPDVS 1982
+G R + P++ P + P S L P S
Sbjct: 267 PPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSS 326
Query: 1983 TEASPPRASQDIPCLDSSAPESGTPMGALGDWPAPIEERESP 2024
PR Q L SS P +P G G P P ER P
Sbjct: 327 GNDETPRLPQRNLSLSSSTPPLPSP-GRSGPLPPPPSERPPP 367
Score = 32.0 bits (71), Expect = 6.3
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPR----LPGPPPAS 1909
P+ P P + G+ + LP P RS + G PPL PP R P PPP S
Sbjct: 378 PLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPRPPL---PPDRPSAGAPPPPPPS 434
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 56.2 bits (134), Expect = 3e-07
Identities = 57/179 (31%), Positives = 72/179 (40%), Gaps = 41/179 (22%)
Query: 1867 GDQPLPPGPGWGPRSSLSG--------SGDGRPPPLLQWPPPRLPGPPPASPIPTEGPR- 1917
G PLP G P S L G G+PPP PPP PGPP A P EGP
Sbjct: 539 GALPLPLSLGQPPPSPLLNHSLFGVLTGGGGQPPPEPLLPPPGGPGPPLA-PGEPEGPSL 597
Query: 1918 ----------------TSRPPGPGLLS-----SEGPSGKWSLGGRKGLGGSDGEPASG-- 1954
S PP L S + GP+ G +G GG GEP SG
Sbjct: 598 LVASLLPPPPSDLLPPPSAPPSNLLASFLPLLALGPTAGDGEGSAEGAGGPSGEPFSGLG 657
Query: 1955 --SPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTPMGAL 2011
SP P S P ++L+ +L ++ PP + PC+ SAP+ G P ++
Sbjct: 658 DLSPLLFPPLSAPPTLIALNSAL-----LAATLDPPSGTPPQPCV-LSAPQPGPPTSSV 710
Score = 43.5 bits (101), Expect = 0.002
Identities = 121/473 (25%), Positives = 155/473 (32%), Gaps = 83/473 (17%)
Query: 197 PQTPPGAVPDPSLASTDSSEPSPLAGDGAPWSGSSMADTPMSPLLKGSLSQELSKSFLTL 256
P PP P P LA + PS L P S + P +P L SFL L
Sbjct: 575 PLLPPPGGPGPPLAPGEPEGPSLLVASLLPPPPSDLLPPPSAP------PSNLLASFLPL 628
Query: 257 TQPDRALVRTSSRRE-QRRGAGGYQPLDRRGSGEPTPQKAGSSDSCFSGTDR-ETLSSFK 314
AL T+ E GAGG SGEP S F TL +
Sbjct: 629 L----ALGPTAGDGEGSAEGAGG-------PSGEPFSGLGDLSPLLFPPLSAPPTLIALN 677
Query: 315 SEKTNSTHLDSPPGGPAP----EGSDTDPPSEAELPASPDAGVPSDDTLRSFDTVIGAGT 370
S +T LD P G P PP+ + A+ D G S S +G
Sbjct: 678 SALLAAT-LDPPSGTPPQPCVLSAPQPGPPTSSVTTATTDPGASSLGKAPS-----NSGR 731
Query: 371 PPGLAEPLL-VVRPKDLALLR------PSKRQPP-------LRRHSPPGRAPRRPLLEGG 416
PP L PLL DL+ L PS QPP L PG PL E
Sbjct: 732 PPQLLSPLLGASLLGDLSSLTSSPGALPSLLQPPGPLLSGQLGLQLLPGGGAPPPLSEAS 791
Query: 417 GFF-----------EDEDTSEGSELSPASSLRSQRRYSTDSS-----SSTSCYSPESSRG 460
E + SPAS+L + S+ S PE G
Sbjct: 792 SPLACLLQSLQIPPEQPEAPCLPPESPASALEPEPARPPLSALAPPHGSPDPPVPELLTG 851
Query: 461 AAGGPRKRRAPHGAE--EGTAVPPK-RPYGTQRTPSTASAKTHARVLSMDGAGGDVLRPP 517
G R RR G G A P + R G++R P + K R G G + R P
Sbjct: 852 RGSGKRGRRGGGGLRGINGEARPARGRKPGSRREPGRLALKWGTR----GGFNGQMERSP 907
Query: 518 LAGCKAELEAQVGVEQAASEPVVLPAEARRGPAANQPGWRGELQEEGAVGGAAEETGRRD 577
+ ++ + +EP P P G V GRR
Sbjct: 908 RRTHHWQHNGELA--EGGAEPKDPPPPGPHSEDLKVP--------PGVV--RKSRRGRRR 955
Query: 578 RSSSVRRTQAIRRRHNAGSNPTPPASVMGSPPSSLQEAQRGRAASHSRALTLP 630
+ + R + + R+ +PT A+V P A+ GR A + R P
Sbjct: 956 KYNPTRNSNSSRQDITLEPSPTARAAVPLPP-----RARPGRPAKNKRRKLAP 1003
Score = 43.1 bits (100), Expect = 0.003
Identities = 45/169 (26%), Positives = 57/169 (33%), Gaps = 33/169 (19%)
Query: 1882 SLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGR 1941
S S G+G P + P GPP A P P T GPG L E PS +
Sbjct: 122 SHSSPGEGASPQMFHTVSP---GPPSARPPCRVPPTTPLNGGPGSLPPEPPSVSQAFPTL 178
Query: 1942 KGLGG------SDGEPASGS------PKGGTPKSQAPLDLSLSLS--------------- 1974
G GG +D P+ GS P+G P P ++SL+
Sbjct: 179 AGPGGLFPPRLADPVPSGGSSSPRFLPRGNAPSPAPPPPPAISLNAPSYNWGAALRSSLV 238
Query: 1975 ---LSLSPDVSTEASPPRASQDIPCLDSSAPESGTPMGALGDWPAPIEE 2020
L P +SPP C D+ P P L P P +
Sbjct: 239 PSDLGSPPAPHASSSPPSDPPLFHCSDALTPPPLPPSNNLPAHPGPASQ 287
Score = 40.4 bits (93), Expect = 0.018
Identities = 42/119 (35%), Positives = 46/119 (38%), Gaps = 33/119 (27%)
Query: 1872 PPGPGWGPRSSLSG-SGDGRPPPL-------------LQWPP--PRLPGPPPASPIPTEG 1915
PPGP + L G G PPPL LQ PP P P PP SP
Sbjct: 764 PPGPLLSGQLGLQLLPGGGAPPPLSEASSPLACLLQSLQIPPEQPEAPCLPPESPASALE 823
Query: 1916 PRTSR--------------PPGPGLLSSEGPSGKWSLGGRKGLGGSDGE--PASGSPKG 1958
P +R PP P LL+ G SGK G GL G +GE PA G G
Sbjct: 824 PEPARPPLSALAPPHGSPDPPVPELLTGRG-SGKRGRRGGGGLRGINGEARPARGRKPG 881
Score = 40.0 bits (92), Expect = 0.023
Identities = 54/181 (29%), Positives = 68/181 (37%), Gaps = 25/181 (13%)
Query: 1858 PTPENTAGNGDQPLPPGPGWGPRSSLSGSG-------------DGRPPPLLQWPPPRLPG 1904
P P + G +P P SSL S +GR P + PR P
Sbjct: 334 PLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPPTVFRLLEGRGPQTPRRSRPRAPA 393
Query: 1905 PPPASPIPTEGPRTSRPPGPGLLSSEG--PSGKWSLGGRKGLGGSDGE--PASGSPKGGT 1960
P P P P S+P P +LS G G G L GSD P G
Sbjct: 394 PVPQ---PFSLPEPSQPILPSVLSLLGLPTPGPSHSDGSFNLLGSDAHLPPPPTLSSGSP 450
Query: 1961 PKSQAPLDLSL--SLSLSLSPDVSTEASPPRASQD--IPCLDSSAPESGTPMGALGDWPA 2016
P+ + P+ SL + S SLS V +PP AS+ +P +P G MGA P
Sbjct: 451 PQPRHPIQPSLPGTTSGSLS-SVPGAPAPPAASKAPVVPSPVLQSPSEGLGMGAGPACPL 509
Query: 2017 P 2017
P
Sbjct: 510 P 510
Score = 32.7 bits (73), Expect = 3.7
Identities = 39/117 (33%), Positives = 45/117 (38%), Gaps = 30/117 (25%)
Query: 320 STHLDSPPGGPAPEGSDTDPPSEAELPASPDAGVPSDDTLRSFDTVIGAGTPPGLAEPLL 379
S +L + PG PA + + L P G P TV G G PP LA LL
Sbjct: 275 SNNLPAHPG-PASQPPVSSATMHLPLVLGPLGGAP---------TVEGPGAPPFLASSLL 324
Query: 380 ----------VVRPKDLALLRPSKRQPPLRRHS----PPGRAPRRP-----LLEGGG 417
+ P L RP + Q P HS P R PRRP LLEG G
Sbjct: 325 SAAAKAQHPPLPPPSTLQGRRP-RAQAPSASHSSSLRPSQRRPRRPPTVFRLLEGRG 380
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 55.8 bits (133), Expect = 4e-07
Identities = 92/428 (21%), Positives = 158/428 (36%), Gaps = 65/428 (15%)
Query: 210 ASTDSSEPSPLAGDGAPWSGSSMADTPMSPLLKGSLSQELSKSFLTLTQPDRALVRTSSR 269
+S+ ++P+P A +PW P S S + ++ R R++ R
Sbjct: 534 SSSSGTQPAPPA-PASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDR 592
Query: 270 RE--QRRGAGGYQPLDRRGSGEPTPQKAGSSDSC---FSGTDRETLSSFKSEKTNSTHLD 324
R RR + RR S P P + SS S G R+ S K +K + + +
Sbjct: 593 RRGGSRRSRSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGE 652
Query: 325 SPPGGPAPEGSDTDPPSEAELPASPDAGVPSDDTLRSFDTVIGAGTPPG---LAEPLLVV 381
G D +A PA P +G S D+ PP L + L
Sbjct: 653 KRSG---------DGSEKAPAPAPPPSGSTS---CGDRDSRRRGAVPPSIQDLTDHDLFA 700
Query: 382 RPKDLALLRPSKRQPPLRRHSP-PGRAPRRPLLEGGGFFEDEDTSEGSELSPASSLRSQR 440
+ + + R K P R SP P +P+R +L D + G E SS + +R
Sbjct: 701 IKRTITVGRLDKSDP--RGPSPAPASSPKREVLY------DSEGLSGEERGGKSSQKDRR 752
Query: 441 RYSTDSSSSTSCYSPESSRGAAGGPR---------------KRRAPHGAEEGTAVPPKRP 485
R SSSS+S + GG R K R P + + PPK P
Sbjct: 753 RSGAASSSSSSREKGSRRKALDGGDRDRDRDRDRDRDRSSKKARPPKESAPSSGPPPKPP 812
Query: 486 YGTQRTPSTASAKTHARVLSMDGAGGDVLRPPLAGCKAELEA------QVGV----EQAA 535
+ S++S+ +R + + ++R ++ +A +GV ++ +
Sbjct: 813 VSSGSGSSSSSSSCSSRKVKLQSKVAVLIREGVSSTTPAKDAASAGLGSIGVKFSRDRES 872
Query: 536 SEPVVLPAE------ARRGPAANQPGWRGELQEEGAVGGAAEETGRRDRSSSVRRTQAIR 589
P + P E A+ P + +P + + A GA + G + ++ + + +R
Sbjct: 873 RSPFLKPDERAPTEMAKAAPGSTKP----KKTKVKAKAGAKKTKGTKGKTKPSKTRKKVR 928
Query: 590 RRHNAGSN 597
+G +
Sbjct: 929 SGGGSGGS 936
Score = 37.7 bits (86), Expect = 0.12
Identities = 69/310 (22%), Positives = 108/310 (34%), Gaps = 67/310 (21%)
Query: 382 RPKDLALLRPSKRQPPLRRHSPPGRAPRRPLLEGGGFFEDEDTS---------------- 425
R +D R SK+ P + +P P +P + G +S
Sbjct: 782 RDRDRDRDRSSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRKVKLQSKVAVLI 841
Query: 426 -EG-SELSPASSLRSQR------RYSTDSSSSTSCYSP------ESSRGAAGGPRKRRAP 471
EG S +PA S ++S D S + P E ++ A G + ++
Sbjct: 842 REGVSSTTPAKDAASAGLGSIGVKFSRDRESRSPFLKPDERAPTEMAKAAPGSTKPKKTK 901
Query: 472 HGAEEGTAVPPKRPYGTQRTPSTASAKTHARVLSMDGAGGDVLRPPLAGCKAELEAQV-- 529
A+ G K+ GT+ T +KT +V S G+GG + L KA+ +Q
Sbjct: 902 VKAKAGA----KKTKGTKG--KTKPSKTRKKVRSGGGSGGSGGQVSLKKSKADSCSQAAG 955
Query: 530 ----------GVEQAASEPVVLPAEARRGPAANQPGWR---------------GELQEEG 564
G E+AA P P +A P A P + E EE
Sbjct: 956 TKGAEETSWSGEERAAKVPSTPPPKAAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEA 1015
Query: 565 AVGGAAEETGRRDRSSSVRRTQAIRRRHNAGSNPTPPASVMGSPPSSL----QEAQRGRA 620
V G AEE + + ++ + T A+ +P + A+ G A
Sbjct: 1016 GVRGGAEEEEEEEEEEEEEEEEEEQQPATTTATSTAAAAPSTAPSAGSTAGDSGAEDGPA 1075
Query: 621 ASHSRALTLP 630
+ S+ TLP
Sbjct: 1076 SRVSQLPTLP 1085
Score = 33.5 bits (75), Expect = 2.2
Identities = 23/65 (35%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 1848 SLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPP 1907
S S+ P A T G P PP P S S P P P P P PPP
Sbjct: 164 SNSSRPTCARHLTLGTGDGGPAP-PPAPS-------SASSSPSPSPSSSSPSPPPPPPPP 215
Query: 1908 ASPIP 1912
A P P
Sbjct: 216 APPAP 220
Score = 32.7 bits (73), Expect = 3.7
Identities = 64/271 (23%), Positives = 89/271 (32%), Gaps = 19/271 (7%)
Query: 291 TPQKAGSSDSCFSGTDRETLSSFKSEKTNSTHLDSPPGGPAPEGSDTDPPSEAELPASPD 350
+PQ S +C T + + S P P+P S PP PA P
Sbjct: 161 SPQSNSSRPTCARHLTLGTGDGGPAPPPAPSSASSSPS-PSPSSSSPSPPPPPPPPAPPA 219
Query: 351 AGVPSDDTLRSFDTVIGAGTPPGLAEPLLVVRPKDLALLRPSKRQPPLRRHSPPGRAPRR 410
P D F A +PP E + P+ P +P
Sbjct: 220 PPAPRFDIYDPFHPTDEAYSPPPAPE-------QKYDPFEPTGSNPSSSAGTPSPEEEEE 272
Query: 411 PLLEGGGFFEDEDTSEGSELSPASSLRSQRRYSTDSSSSTSCYSPESSRGAAGGPRKRRA 470
E EDE+ EG S + + D+S S ES R A + A
Sbjct: 273 EEEEEEEEEEDEEEEEGLSQSISRISETLAGIYDDNSLSQDFPGDESPRPDAQPTQPTPA 332
Query: 471 PHGAEEGTAVPPKRPYGTQR-----TPSTASAKTHARV-LSMDGAGGDVLRPPLAGCKAE 524
P + V R G R + A A +V + + AGG L PPL +
Sbjct: 333 PGTPPQ---VDSTRADGAMRRRVFVVGTEAEACREGKVSVEVVTAGGAALPPPLLP-PGD 388
Query: 525 LEAQVG-VEQAASEPVVLPAEARRGPAANQP 554
E + G + Q EP + + R G A +P
Sbjct: 389 SEIEEGEIVQPEEEPRLALSLFRPGGRAARP 419
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 55.5 bits (132), Expect = 5e-07
Identities = 58/165 (35%), Positives = 68/165 (41%), Gaps = 25/165 (15%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQPL---PPGPGWGPRSSLSGSGDGRPPPLLQWP 1898
G GGL + NP + P P+ G P PPGP P +L G G P P Q P
Sbjct: 1205 GDGGLPGIPGNPGL--PGPKGEPGFHGFPGVQGPPGPPGSPGPALEGP-KGNPGP--QGP 1259
Query: 1899 PPR-----LPGP--PPASP----IPTEGPRTSRP--PG-PGLLSSEGPSGKWSLGGRKGL 1944
P R LPGP PP P I E +P PG PGL +GP G GR GL
Sbjct: 1260 PGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGL 1319
Query: 1945 GGSDGEPA-SGSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPP 1988
G G+P G P G P + P + S P + PP
Sbjct: 1320 NGMKGDPGLPGVP--GFPGMKGPSGVPGSAGPEGEPGLIGPPGPP 1362
Score = 47.0 bits (110), Expect = 2e-04
Identities = 53/168 (31%), Positives = 61/168 (36%), Gaps = 14/168 (8%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGW-GPRSSLSGSG-DGRPPPLLQWPPPRLPGPPPASPI 1911
P+ P G P PPG GP G G P P+ P LPG AS
Sbjct: 832 PIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGF 891
Query: 1912 P-TEGPR-TSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG-----GTPKS 1963
P T+G PPG PG L G SG L G GL G G P KG G P
Sbjct: 892 PGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGP 951
Query: 1964 QAPLDLSLSLSLSLSPDVSTEASP----PRASQDIPCLDSSAPESGTP 2007
P+D +L S + P P+ Q +P SG P
Sbjct: 952 PGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQP 999
Score = 46.6 bits (109), Expect = 2e-04
Identities = 40/120 (33%), Positives = 45/120 (37%), Gaps = 15/120 (12%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSG-------DGRPPPLLQWPPPRLPGPP 1906
PV + AGN QP PGP P +++ G GR + P LPG P
Sbjct: 630 PVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQP 689
Query: 1907 PASPIP-------TEGPRTSRPPGP-GLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
IP G PPGP G GP G GR GL G G P PKG
Sbjct: 690 GLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKG 749
Score = 42.4 bits (98), Expect = 0.005
Identities = 39/131 (29%), Positives = 45/131 (34%), Gaps = 7/131 (5%)
Query: 1833 GNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPP 1892
GN G G + P P N +GD LP PG + L G +
Sbjct: 641 GNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
Query: 1893 PLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKG-----LGGS 1947
P + P LPGPP P P PG + EGP G G KG L G
Sbjct: 701 PGI--PGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGP 758
Query: 1948 DGEPASGSPKG 1958
G P KG
Sbjct: 759 PGPPGLPGFKG 769
Score = 42.0 bits (97), Expect = 0.006
Identities = 40/135 (29%), Positives = 48/135 (35%), Gaps = 16/135 (11%)
Query: 1842 GGGGLTSLSNNPPV-AHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPP 1900
G G++ NP + P P G+ QP PPG P DG P P Q P
Sbjct: 1131 GPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQ------DGIPGPAGQKGEP 1184
Query: 1901 RLPG-----PPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGS 1955
PG PP + + P PG GP G+ G G+ G G P S
Sbjct: 1185 GQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPG 1244
Query: 1956 P----KGGTPKSQAP 1966
P G P Q P
Sbjct: 1245 PALEGPKGNPGPQGP 1259
Score = 40.0 bits (92), Expect = 0.023
Identities = 37/125 (29%), Positives = 41/125 (32%), Gaps = 10/125 (8%)
Query: 1828 GCNSGGNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSG 1887
GC+ G D S G G P E G P P GP GPR G
Sbjct: 31 GCSPGSKCDCSGIKGEKGERGF--------PGLEGHPGLPGFPGPEGPP-GPRGQKGDDG 81
Query: 1888 -DGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGG 1946
G P P PP LPG P +P P G+ G G+ G G G
Sbjct: 82 IPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG 141
Query: 1947 SDGEP 1951
G P
Sbjct: 142 LQGPP 146
Score = 40.0 bits (92), Expect = 0.023
Identities = 40/139 (28%), Positives = 48/139 (34%), Gaps = 37/139 (26%)
Query: 1865 GNGDQPLPPGPGW--GPRSSLSGSGDGRPPPLLQWP-PPRLPGPPPASPIPTEGPRTSR- 1920
GN P PPG GP G PP L+ P PP LPGP + +GP+ +
Sbjct: 171 GNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKG 230
Query: 1921 ------PPGP--------------------GLLSSEGPSGKWSL-------GGRKGLGGS 1947
PPGP GL GP G + GG KG G
Sbjct: 231 EQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGE 290
Query: 1948 DGEPASGSPKGGTPKSQAP 1966
GEP G ++ P
Sbjct: 291 QGEPGKRGKPGKDGENGQP 309
Score = 40.0 bits (92), Expect = 0.023
Identities = 40/118 (33%), Positives = 45/118 (38%), Gaps = 17/118 (14%)
Query: 1865 GNGDQPLPPG-----PGWGPR---------SSLSGSGDGRPPPLLQWPPPRLPGPPPASP 1910
G+ P PPG PG G L G R P +Q PP LPGPP A+
Sbjct: 334 GDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPG-LPGPPGAAV 392
Query: 1911 IPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPKSQAPLD 1968
+ GP P G EGP G S+ G GL G G P P G P D
Sbjct: 393 MGPPGP-PGFPGERGQKGDEGPPG-ISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSD 448
Score = 39.3 bits (90), Expect = 0.040
Identities = 39/115 (33%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 1858 PTPENTAGNGDQPLPPGP-GWGPRSSLSG--SGDG-RPPPLLQWPP--------PRLPGP 1905
P + G P PPGP G RS + G DG + P L P P LPGP
Sbjct: 892 PGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGP 951
Query: 1906 P-PASPIPTEGPRTSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P P P PG PG+ GP G L G G G G+P P G
Sbjct: 952 PGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPG 1006
Score = 38.9 bits (89), Expect = 0.052
Identities = 36/106 (33%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRP------PPLLQWPP--PRLPGP 1905
P P P A G PPGP P +G P PP L P P LPGP
Sbjct: 381 PPGLPGPPGAAVMG----PPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGP 436
Query: 1906 P-PASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGE 1950
P PA P P PG S G G L G +G+ G G+
Sbjct: 437 PGPAGPHIPPSDEICEPGPPGPPGSPGDKG---LQGEQGVKGDKGD 479
Score = 38.5 bits (88), Expect = 0.068
Identities = 41/141 (29%), Positives = 48/141 (34%), Gaps = 23/141 (16%)
Query: 1842 GGGGLTSLSNNPPVAHPT-------PENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPL 1894
G GL + P + P+ PE G P PPG S+ GD PP +
Sbjct: 1324 GDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGI 1383
Query: 1895 LQWP----------PPRLPGP--PPASP----IPTEGPRTSRPPGPGLLSSEGPSGKWSL 1938
P P LPGP PP P +P R PGL G G
Sbjct: 1384 PGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1443
Query: 1939 GGRKGLGGSDGEPASGSPKGG 1959
G GL G G P + S G
Sbjct: 1444 PGPDGLQGPPGPPGTSSVAHG 1464
Score = 37.7 bits (86), Expect = 0.12
Identities = 35/95 (36%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 1867 GDQPLPPGPGWGPRSSLSGS-GDGRPPPLLQWPPPRLPGPPPASPIP--TEGPRTSRPPG 1923
G + P PG+ + GS GD P L P LPG P A P P T PPG
Sbjct: 1080 GPKGEPGLPGYPGNPGIKGSVGD---PGL-----PGLPGTPGAKGQPGLPGFPGTPGPPG 1131
Query: 1924 PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P +S GP G L G G G G P P G
Sbjct: 1132 PKGIS--GPPGNPGLPGEPGPVGGGGHPGQPGPPG 1164
Score = 36.2 bits (82), Expect = 0.34
Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Query: 1838 SDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQW 1897
S G G L P + PT E G+ +P PGP +L GS + P L
Sbjct: 916 SGVPGLKGDDGLQGQPGLPGPTGEK--GSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPG 973
Query: 1898 PPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDG 1949
P + GP +P + + PGL GP G L G+ GL G G
Sbjct: 974 IPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPG 1024
Score = 35.4 bits (80), Expect = 0.57
Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 28/124 (22%)
Query: 1853 PPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPP--LLQWPPPRLPGPPPASP 1910
P ++ P P G P PGP GP +G PP + + PP PG P
Sbjct: 414 PGISIPGPPGLDGQPGAPGLPGPP-GP------AGPHIPPSDEICEPGPPGPPGSPGDKG 466
Query: 1911 IPTE---------------GPRTSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPASG 1954
+ E G S PPG PGL GP G G+K G G+ +
Sbjct: 467 LQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQK---GEKGQAGAT 523
Query: 1955 SPKG 1958
PKG
Sbjct: 524 GPKG 527
Score = 35.4 bits (80), Expect = 0.57
Identities = 51/192 (26%), Positives = 66/192 (34%), Gaps = 42/192 (21%)
Query: 1867 GDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPP----------------PRLPGPPPASP 1910
G + LP PG GS G P +L +P P LPG P
Sbjct: 524 GPKGLPGIPGAPGAPGFPGS-KGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDG 582
Query: 1911 IP-TEGPR----------TSRPPG----PGLLSSEGPSGKWSLG--------GRKGLGGS 1947
+P GP+ PPG PGL + GP G G G +G+ G+
Sbjct: 583 LPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGN 642
Query: 1948 DGEPASGSPKGGTPKS-QAPLDLSLSLSLSLSPDVSTEASPPRASQ-DIPCLDSSAPESG 2005
G+P PKG ++ P L + DV P Q +P + S E G
Sbjct: 643 PGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPG 702
Query: 2006 TPMGALGDWPAP 2017
P L P P
Sbjct: 703 IPGIGLPGPPGP 714
Score = 35.4 bits (80), Expect = 0.57
Identities = 43/130 (33%), Positives = 51/130 (39%), Gaps = 15/130 (11%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGD-GRPPPLLQWPPP 1900
G G LS P + P P GN P PG GP GD G P P PP
Sbjct: 988 GDPGQPGLSGQPGL--PGPPGPKGNPGLPGQPGL-IGPPGLKGTIGDMGFPGPQGVEGPP 1044
Query: 1901 R---LPGPPPASPIPTE-----GPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPA 1952
+PG P + +P + P S PGL +G G G G+ GS G+P
Sbjct: 1045 GPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPG 1104
Query: 1953 -SGSPKGGTP 1961
G P GTP
Sbjct: 1105 LPGLP--GTP 1112
Score = 35.0 bits (79), Expect = 0.75
Identities = 40/143 (27%), Positives = 51/143 (35%), Gaps = 13/143 (9%)
Query: 1828 GCNSGGNVDDSDCSGGGGLTSLSNNP-PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGS 1886
GCN G + G G L P P P + G+ PGP P
Sbjct: 123 GCN--GTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPG 180
Query: 1887 GDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGG 1946
G P P P P P PP P P P G L+ +GP G+ G +GL G
Sbjct: 181 IQGLPGPT-GIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGE---KGEQGLQG 236
Query: 1947 SDGEPASGSPKGGTPKSQAPLDL 1969
G P G + + P+D+
Sbjct: 237 PPG------PPGQISEQKRPIDV 253
Score = 34.3 bits (77), Expect = 1.3
Identities = 46/168 (27%), Positives = 55/168 (32%), Gaps = 22/168 (13%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPG-PGW-GPRSSLSGSGDGRPPPLLQWPP 1899
G G L P P + G +P PG PG GP+ GD P L
Sbjct: 941 GSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSG--Q 998
Query: 1900 PRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGG 1959
P LPGPP P P PGL+ GP G G G G G P G
Sbjct: 999 PGLPGPPGPKGNP------GLPGQPGLI---GPPGLKGTIGDMGFPGPQGVEGPPGPSGV 1049
Query: 1960 TPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTP 2007
+ +P L + P +S +P L E G P
Sbjct: 1050 PGQPGSP---------GLPGQKGDKGDPGISSIGLPGLPGPKGEPGLP 1088
Score = 33.5 bits (75), Expect = 2.2
Identities = 38/123 (30%), Positives = 45/123 (36%), Gaps = 26/123 (21%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPP-----PA 1908
P+ P P G P PGP + G + LQ PP GPP
Sbjct: 193 PIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPP----GPPGQISEQK 248
Query: 1909 SPIPTEG-------PRTSRPPGP-GLLSSEGPSG-----KWSLG--GRKGLGGSDGEPAS 1953
PI E P PPGP G+ GP G K G G++G G DGE +
Sbjct: 249 RPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGE--N 306
Query: 1954 GSP 1956
G P
Sbjct: 307 GQP 309
Score = 32.0 bits (71), Expect = 6.3
Identities = 36/128 (28%), Positives = 43/128 (33%), Gaps = 35/128 (27%)
Query: 1858 PTPENTAGNGDQPLPPGPGWGPRS----SLSGS-GDGRPPPLLQWPPPRLPGPP------ 1906
P P+ G PPGP P L G GD P + P LPGP
Sbjct: 1035 PGPQGVEG------PPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLP 1088
Query: 1907 --PASP-------------IPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEP 1951
P +P +P +P PG + GP G + G G G GEP
Sbjct: 1089 GYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEP 1148
Query: 1952 ASGSPKGG 1959
P GG
Sbjct: 1149 ---GPVGG 1153
Score = 32.0 bits (71), Expect = 6.3
Identities = 36/122 (29%), Positives = 43/122 (35%), Gaps = 16/122 (13%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQP-LPPGPGWGPRSSLSGSGDGRPPPLLQWPPP 1900
G GL NP + + + G+ P LP PG + L G PP P
Sbjct: 1083 GEPGLPGYPGNPGI-----KGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPP----GPK 1133
Query: 1901 RLPGPP-----PASPIPTEGPRTSRPPGP-GLLSSEGPSGKWSLGGRKGLGGSDGEPASG 1954
+ GPP P P P G PGP G G G G+KG G G G
Sbjct: 1134 GISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPG 1193
Query: 1955 SP 1956
P
Sbjct: 1194 PP 1195
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 55.1 bits (131), Expect = 7e-07
Identities = 57/194 (29%), Positives = 71/194 (36%), Gaps = 44/194 (22%)
Query: 1853 PPVAHPTPENTAG---NGDQPLPP----GPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGP 1905
PP P AG GD+P PP G +G + L G PPP+ + PP P P
Sbjct: 253 PPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFG-QPPLGPLPPGPPPPVPGYGPPPGPPP 311
Query: 1906 PPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPKSQA 1965
P P P GP RPPGP LG L P G P G P
Sbjct: 312 PQQGPPPPPGPFPPRPPGP-------------LGPPLTLAPPPHLP--GPPPGAPPP--- 353
Query: 1966 PLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTPMGA-----LGDWPAPIEE 2020
+P V+ PP + +P DS P P G GD+ P E
Sbjct: 354 ------------APHVNPAFFPPPTNSGMPTSDSRGPPPTDPYGRPPPYDRGDYGPPGRE 401
Query: 2021 RESPAAQPLLEHQY 2034
++ A PL E ++
Sbjct: 402 MDT-ARTPLSEAEF 414
>gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]
Length = 845
Score = 55.1 bits (131), Expect = 7e-07
Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 21/196 (10%)
Query: 1847 TSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPP---LLQWPPPRLP 1903
T + +P T T+ + P PP P GP ++ SG G G PP L+ P P
Sbjct: 459 TDVPPSPEAGGTTGPWTSTTSEVPRPPEPSQGPSTTSSGGGTGPHPPSGTTLRPPTSSTP 518
Query: 1904 GPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDG-EPASGSPKGGT-- 1960
G PP + E + +P PG +++ P S G+G S +PA +P GGT
Sbjct: 519 GGPPGA----ENSTSHQPATPGGDTAQTPKPGTSQPMPPGVGTSTSHQPA--TPSGGTAQ 572
Query: 1961 ---PKSQAPLDLSLSLSLSLSPDV--STEASPPRA--SQDIP--CLDSSAPESGTPMGAL 2011
P + P+ S+ S S P A P A SQ +P S++ + TP G
Sbjct: 573 TPEPGTSQPMPPSMGTSTSHQPATPGGGTAQTPEAGTSQPMPPGMGTSTSHQPTTPGGGT 632
Query: 2012 GDWPAPIEERESPAAQ 2027
P P + P ++
Sbjct: 633 AQTPEPGTSQPMPLSK 648
Score = 40.0 bits (92), Expect = 0.023
Identities = 89/379 (23%), Positives = 128/379 (33%), Gaps = 64/379 (16%)
Query: 184 LKLSSQEKLIGDLPQTPPGAVPDPSLASTDSSEPSPLAGDGAPWSGSSMADT-------- 235
+++S QE D+P +P ST S P P P + SS T
Sbjct: 449 IQVSEQEPPSTDVPPSPEAGGTTGPWTSTTSEVPRPPEPSQGPSTTSSGGGTGPHPPSGT 508
Query: 236 ----PMSPLLKGSLSQELSKSFLTLT--------------QPDRALVRTSSRREQRRGAG 277
P S G E S S T QP V TS+ + +G
Sbjct: 509 TLRPPTSSTPGGPPGAENSTSHQPATPGGDTAQTPKPGTSQPMPPGVGTSTSHQPATPSG 568
Query: 278 GYQPLDRRGSGEPTPQKAGSSDS----CFSGTDRETLSSFKSEK------TNSTHLDSPP 327
G G+ +P P G+S S G +T + S+ T+++H + P
Sbjct: 569 GTAQTPEPGTSQPMPPSMGTSTSHQPATPGGGTAQTPEAGTSQPMPPGMGTSTSHQPTTP 628
Query: 328 GG---PAPEGSDTDP-PSEAELPASPDAGVPSDDTLRSFDTVIGAGTPPGLAEPLLVVRP 383
GG PE + P P P+S G PS+D S V+ G+ LL++
Sbjct: 629 GGGTAQTPEPGTSQPMPLSKSTPSS--GGGPSEDKRFS---VVDMAALGGVLGALLLLAL 683
Query: 384 KDLALLRPSKRQPPLRRHSPPGRAPRRPLLEGGGFFEDEDT------SEGSELSPASSLR 437
LA+L P L+ S P+ + F D S + PA +
Sbjct: 684 LGLAVLVHKHYGPRLKCCSGKAPEPQPQGFDNQAFLPDHKANWAPVPSPTHDPKPAEAPM 743
Query: 438 SQRRYSTDSSSSTSCYSPESSRGAAGGP-------RKRRAPHGAEEGTAVPPKRPYGTQR 490
+S P ++ A G P K R P G + AV GT+
Sbjct: 744 PAEPAPPGPASPGGAPEPPAAARAGGSPTAVRSILTKERRPEGGYK--AVWFGEDIGTEA 801
Query: 491 TPSTASAKTHARVLSMDGA 509
+A T L +DGA
Sbjct: 802 DVVVLNAPT----LDVDGA 816
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 54.7 bits (130), Expect = 9e-07
Identities = 41/129 (31%), Positives = 51/129 (39%), Gaps = 18/129 (13%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPR 1901
G G + + PP + P T P PG G GP + PPP + PP
Sbjct: 114 GPGPAPGVGSAPPASSSAPPATPPTSGAP--PGSGPGPTPT--------PPPAVTSAPPG 163
Query: 1902 LPGP-PPASPIPTEGPRTSRP-------PGPGLLSSEGPSGKWSLGGRKGLGGSDGEPAS 1953
P P PP+S +PT P+ P PGPG +GP GG+ G G
Sbjct: 164 APPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPG 223
Query: 1954 GSPKGGTPK 1962
S GG PK
Sbjct: 224 LSTPGGHPK 232
Score = 45.8 bits (107), Expect = 4e-04
Identities = 54/190 (28%), Positives = 67/190 (35%), Gaps = 36/190 (18%)
Query: 1842 GGGGLTSLSN--NPPVAHPTPENTAGNG-----DQPLPPGPGWGPRSSLSGSGDGRPPPL 1894
GGGG L + +PP +N G P PP P P +PPP
Sbjct: 21 GGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQ-----QQQPPP- 74
Query: 1895 LQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLG----GSDGE 1950
Q PPP+ PPP P P P + P P S P G G+G S
Sbjct: 75 -QQPPPQ--QPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSA 131
Query: 1951 PASGSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESG---TP 2007
P + P G P P + +P + ++PP A P P SG TP
Sbjct: 132 PPATPPTSGAPPGSGP-------GPTPTPPPAVTSAPPGAPPPTP------PSSGVPTTP 178
Query: 2008 MGALGDWPAP 2017
A G P P
Sbjct: 179 PQAGGPPPPP 188
Score = 34.7 bits (78), Expect = 0.98
Identities = 41/131 (31%), Positives = 44/131 (33%), Gaps = 32/131 (24%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGP---PPAS- 1909
P HP P Q PP P + G G P + PP P PP S
Sbjct: 87 PPPHPQPHQ------QQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSG 140
Query: 1910 --------PIPTEGPR-TSRPPG---PGLLSSEGPSGKWSLGG---------RKGLGGSD 1948
P PT P TS PPG P SS P+ GG G G
Sbjct: 141 APPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQ 200
Query: 1949 GEPASGSPKGG 1959
G P G PKGG
Sbjct: 201 G-PGPGGPKGG 210
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 53.5 bits (127), Expect = 2e-06
Identities = 63/208 (30%), Positives = 70/208 (33%), Gaps = 28/208 (13%)
Query: 1844 GGLTSLSNNPPVAHPT-PENTAGNGDQ-PLPPGPGWGP-------RSSLSGSGDGRPPPL 1894
GG PP P P GN Q P PPG GP RS S G + PP
Sbjct: 43 GGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPP 102
Query: 1895 LQWPPPRLPGPPPA---SPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEP 1951
P+ P PPP P P G R PP PG P G S R G G P
Sbjct: 103 QGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP 162
Query: 1952 ASG--SPKGGTP---KSQAPLDLSLSLSLSLSPDVSTEASPP-----RASQDIPCLDSSA 2001
G P+G P K Q P P + PP R+SQ P
Sbjct: 163 PQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGP 222
Query: 2002 PESG--TPMGALGDWPAPIEERESPAAQ 2027
P G P G P P + + P Q
Sbjct: 223 PPQGGNQPQGP----PPPPGKPQGPPPQ 246
Score = 44.3 bits (103), Expect = 0.001
Identities = 41/129 (31%), Positives = 47/129 (36%), Gaps = 17/129 (13%)
Query: 1853 PPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPA---S 1909
PP P+ G PP G RSS S G + PP P+ P PPP
Sbjct: 183 PPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQG 242
Query: 1910 PIPTEGPRTSRPPGPGLLSSEGP---SGKWSLGGRKGLGGSDGEPASGS--------PKG 1958
P P G + PP PG +GP G S R G G P P G
Sbjct: 243 PPPQGGNKPQGPPPPG--KPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAG 300
Query: 1959 GTPKS-QAP 1966
G P+ QAP
Sbjct: 301 GNPQQPQAP 309
Score = 39.3 bits (90), Expect = 0.040
Identities = 31/92 (33%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 1844 GGLTSLSNNPPVAHPT-PENTAGNGDQ-PLPPGPGWGPRSSL-SGSGDGRPPPLLQWPPP 1900
GG PP P P GN Q P PPG GP + S S R PP PP
Sbjct: 226 GGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPP 285
Query: 1901 RLPGPPPASPIPTEGPRTSRPPGPGLLSSEGP 1932
+ G P P P G +P P +GP
Sbjct: 286 QQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGP 317
Score = 38.9 bits (89), Expect = 0.052
Identities = 47/166 (28%), Positives = 58/166 (34%), Gaps = 16/166 (9%)
Query: 1859 TPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRT 1918
+P AGN P GP P+ G PP Q PPP+ G P P P P+
Sbjct: 28 SPSLIAGN-----PQGPS--PQGGNKPQGPPPPPGKPQGPPPQ-GGNKPQGPPPPGKPQG 79
Query: 1919 SRPPGPGLLSSEGPSGKWS----LGGRKGLG--GSDGEPASGSPKGGTPKSQAPLDLSLS 1972
P G S P GK GG + G G+P P+GG + Q P
Sbjct: 80 PPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN-RPQGPPPPGKP 138
Query: 1973 LSLSLSPDVS-TEASPPRASQDIPCLDSSAPESGTPMGALGDWPAP 2017
D S + SPP Q P + P+ P P P
Sbjct: 139 QGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPP 184
Score = 38.5 bits (88), Expect = 0.068
Identities = 29/84 (34%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 1844 GGLTSLSNNPPVAHPTPENTAGNGDQPL--PPGPGWGPRSSLSGSGDGRPPPLLQWPP-P 1900
GG PP P G+ Q PPG GP + G PPP P P
Sbjct: 247 GGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQP 306
Query: 1901 RLP--GPPPASPIPTEGPRTSRPP 1922
+ P G P P P +G R SRPP
Sbjct: 307 QAPPAGQPQGPPRPPQGGRPSRPP 330
Score = 32.3 bits (72), Expect = 4.8
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 327 PGGPAPEGSDTDPPSEAELPASPDA--GVPSDDTLRSFDTVIGAGTPPGLAEPLLVVRPK 384
P GP P G PP + + SP + G P + + G PPG + P
Sbjct: 68 PQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQ-----GPP 122
Query: 385 DLALLRPSKRQPPLRRHSPP-----GRAPRRP 411
RP PP + PP R+PR P
Sbjct: 123 PQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSP 154
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 52.0 bits (123), Expect = 6e-06
Identities = 135/541 (24%), Positives = 189/541 (34%), Gaps = 94/541 (17%)
Query: 165 LVREQGSNNVIVTSADREMLKLSSQEKLIGDLPQTPPGAVPDPSLASTDSSEPSPLAGDG 224
L R Q S+ + T + + ++ + LP+ + PS AS S PS +
Sbjct: 76 LTRMQSSSLLTRTPSMASLKRMPPRASRTRTLPRA--SLMRRPSTASLTRS-PSRASLTT 132
Query: 225 APWSGSSMADTPMSPLLKGSLSQELSKSFLTLTQPDRALVRTSSRREQRRGAGGYQPLDR 284
P S A M+P +L+ S++ LT T P +L T S R P
Sbjct: 133 TP----SRASLSMTPSTAAALTMP-SRASLTRTPPRASLTMTPSTASLTRTPPRASPTGM 187
Query: 285 RGSGEPTPQKAGSSDSCFSGTDRETLSSFKSEKTNSTHLDSPPGGPAPEGSDTDPPSEAE 344
PT + +S + T T + ++ T + SP G P P S + PS A
Sbjct: 188 PSRTSPTGMPSTASLTKMDSTASITRTLSRASPTGTPPRASPTGSP-PRASLSMMPSTAL 246
Query: 345 L----PASPDAGVPSDDTLRSFDTVIG-AGTP--PGLAEPL-------LVVRPKDLALLR 390
L P + G+ S +L D+ TP P A P L + P +L+R
Sbjct: 247 LIRTPPRASPTGMLSRTSLTKMDSTASITRTPSRPSTASPTGTPSRASLSMTPSTASLMR 306
Query: 391 PSKRQPPLRRHSPPGRAPRRPLLEGGGFFEDEDTSEGSELSPASSL-RSQRRYSTDSSSS 449
L R SP G R L + + T+ S P +S+ R+ R S S
Sbjct: 307 ------MLPRASPTGMLSRTSLT------KMDSTASISRTPPRASITRTPSRASPTGKPS 354
Query: 450 TSCYSPESSRGAAGGPRKRRAPHG---AEEGTAVPPK-RPYGTQRTPSTASAK------- 498
T+ + SR + G + G T PP+ P G TPSTAS
Sbjct: 355 TASPTGTPSRASPTGSPSTASLTGLSSTASPTGTPPRASPTG---TPSTASLTRKPPRAS 411
Query: 499 -----THARVLSMDGAGGDVLRPPLAGCKAELEAQVGVEQAASEPVVLPAEARRGPAANQ 553
+ + MD PP A + G AS P P+ A +
Sbjct: 412 PTGMLSRTSITKMDSTASPTRTPPRA-------SPTGTPPRAS-PTGTPSRASPTGTQST 463
Query: 554 PGWRGELQEEGAVG--GAAEETGRRDRSSSVR---RTQAIRRRHNAGSNPTP-------- 600
G G A TG R+S R R + A TP
Sbjct: 464 ASPTGSPSTASPTGSPSTASPTGSPSRASLTRTPSRASLTKMESTASITRTPSRASPTWT 523
Query: 601 --PASVMGSPPSSLQEAQRGRAA---SHSRA----------LTLPSALHFA---SSLLLT 642
AS GSP ++L RAA + SRA LT PS S++LLT
Sbjct: 524 PSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSRASLTTPSRASLTRTPSTVLLT 583
Query: 643 R 643
R
Sbjct: 584 R 584
Score = 51.2 bits (121), Expect = 1e-05
Identities = 105/460 (22%), Positives = 149/460 (32%), Gaps = 87/460 (18%)
Query: 196 LPQTPPGAVPDPSLASTD-------------SSEPSPLAGDGAPWSGSSMADTP-----M 237
L +TPP A P L+ T S PS + G P S +S++ TP M
Sbjct: 247 LIRTPPRASPTGMLSRTSLTKMDSTASITRTPSRPSTASPTGTP-SRASLSMTPSTASLM 305
Query: 238 SPLLKGSLSQELSKSFLTLTQPDRALVRTSSRREQRRGAGGYQPLDRRGSGEPTPQKAGS 297
L + S + LS++ LT ++ RT R R P + + PT + +
Sbjct: 306 RMLPRASPTGMLSRTSLTKMDSTASISRTPPRASITRTPSRASPTGKPSTASPTGTPSRA 365
Query: 298 SDSCFSGTDRETLSSFKSEKTNSTHLDSPPGGPAPEGSDTDPPSEAELPASPDAGVPSDD 357
S T S + T + SP G P P S T PS A L P P+
Sbjct: 366 S---------PTGSPSTASLTGLSSTASPTGTP-PRASPTGTPSTASLTRKPPRASPTGM 415
Query: 358 TLRSFDTVIGAGTPPGLAEPLLVVRPKDLALLRPSKRQPPLRRHSPPGRAPRRPLLEGGG 417
R+ T + + P R PP R SP G PR
Sbjct: 416 LSRTSITKMDSTASP--------------------TRTPP--RASPTGTPPRA------- 446
Query: 418 FFEDEDTSEGSELSPASSLRSQRRYSTDSSSSTSCYSPESSRGAAGGPRKRRAPHGAEEG 477
T S SP + T S S+ S S+ G P +
Sbjct: 447 ----SPTGTPSRASPTGT--QSTASPTGSPSTASPTGSPSTASPTGSPSRASLTRTPSRA 500
Query: 478 TAVPPKRPYGTQRTPSTASAKTHARVLSMDGAGGDVLR--PPLAGCKAELEAQVGVEQAA 535
+ + RTPS AS S G+ L P ++ + +
Sbjct: 501 SLTKMESTASITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTP 560
Query: 536 SE-PVVLPAEA------------RRGPAANQPGWRGELQEEGAVGGAAEETGRRDRSSSV 582
S + P+ A R P+A+ G G A + D ++S+
Sbjct: 561 SRASLTTPSRASLTRTPSTVLLTRMPPSASPTGMPSRTSPTGMPSSAL--LTKMDSTASI 618
Query: 583 RRTQAIRRRHNAGSNPTPP-ASVMGSPPSSLQEAQRGRAA 621
RT A TPP AS G+PP + RA+
Sbjct: 619 TRTPP-----RASPTETPPRASPTGTPPRASPTGTPPRAS 653
Score = 40.0 bits (92), Expect = 0.023
Identities = 45/181 (24%), Positives = 63/181 (34%), Gaps = 14/181 (7%)
Query: 1833 GNVDDSDCSGGGGLTSLSNNPPVAHPT--PENTAGNGDQPLPPGPGWGPRSSLSGSGDGR 1890
G+ + +G S + PP A PT P + P G R+S++
Sbjct: 369 GSPSTASLTGLSSTASPTGTPPRASPTGTPSTASLTRKPPRASPTGMLSRTSITKMDSTA 428
Query: 1891 PPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGE 1950
P PP ASP T PR S P S G S G G
Sbjct: 429 SPTRT---------PPRASPTGTP-PRASPTGTPSRASPTGTQSTASPTGSPSTASPTGS 478
Query: 1951 PASGSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTPMGA 2010
P++ SP G ++ S + + S +P RAS S+A +G+P A
Sbjct: 479 PSTASPTGSPSRASLTRTPSRASLTKMESTASITRTPSRASP--TWTPSTASPTGSPSTA 536
Query: 2011 L 2011
L
Sbjct: 537 L 537
Score = 35.0 bits (79), Expect = 0.75
Identities = 38/143 (26%), Positives = 52/143 (36%), Gaps = 9/143 (6%)
Query: 1890 RPPP---LLQWPPPRLPGPPPASPIPTEGPRTSRPPG-PGLLSSEGPSGKWSLGGRKGLG 1945
R PP + + P P P++ PT P + P G P S G S S G
Sbjct: 333 RTPPRASITRTPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGTPPRA 392
Query: 1946 GSDGEPASGSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESG 2005
G P++ S P++ LS + + S +PPRAS A +G
Sbjct: 393 SPTGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASP--TGTPPRASPTG 450
Query: 2006 TPMGALGDWPAPIEERESPAAQP 2028
TP A P + SP P
Sbjct: 451 TPSRAS---PTGTQSTASPTGSP 470
Score = 32.0 bits (71), Expect = 6.3
Identities = 54/199 (27%), Positives = 71/199 (35%), Gaps = 20/199 (10%)
Query: 1833 GNVDDSDCSGGGGLTSLSNNPPVAHPTP-ENTAGNGDQPLPPGPGWGPRSSLSGSGDGRP 1891
G+ + +G SL+ P A T E+TA P P W P ++ S G P
Sbjct: 477 GSPSTASPTGSPSRASLTRTPSRASLTKMESTASITRTPSRASPTWTPSTA---SPTGSP 533
Query: 1892 PPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEP 1951
L G P + + R S P S PS + SL P
Sbjct: 534 STALAM------GSPSRAALTRTPSRASLTRTPSRASLTTPS-RASLTRTPSTVLLTRMP 586
Query: 1952 ASGSPKGGTPKSQAPLDL-SLSLSLSLSPDVSTEASPPRAS-QDIPCLDSSAPESGTPMG 2009
S SP G P +P + S +L + S +PPRAS + P A +GTP
Sbjct: 587 PSASPTG-MPSRTSPTGMPSSALLTKMDSTASITRTPPRASPTETP---PRASPTGTPPR 642
Query: 2010 ALGDWPAPIEERESPAAQP 2028
A P R SP P
Sbjct: 643 AS---PTGTPPRASPTGTP 658
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 52.0 bits (123), Expect = 6e-06
Identities = 57/169 (33%), Positives = 67/169 (39%), Gaps = 30/169 (17%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQPL---PPGPGWGPRSSLSGSGDGRPPPLLQWP 1898
G GGL + NP + P P+ G P PPGP P +L G G P P Q P
Sbjct: 1205 GDGGLPGIPGNPGL--PGPKGEPGFHGFPGVQGPPGPPGSPGPALEGP-KGNPGP--QGP 1259
Query: 1899 PPRLPGP-----------PPASP----IPTEGPRTSRP--PG-PGLLSSEGPSGKWSLGG 1940
P R PGP PP P I E +P PG PGL +GP G G
Sbjct: 1260 PGR-PGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPG 1318
Query: 1941 RKGLGGSDGEPA-SGSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPP 1988
R GL G G+P G P G P + P + S P + PP
Sbjct: 1319 RPGLNGMKGDPGLPGVP--GFPGMKGPSGVPGSAGPEGEPGLIGPPGPP 1365
Score = 47.0 bits (110), Expect = 2e-04
Identities = 53/168 (31%), Positives = 61/168 (36%), Gaps = 14/168 (8%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGW-GPRSSLSGSG-DGRPPPLLQWPPPRLPGPPPASPI 1911
P+ P G P PPG GP G G P P+ P LPG AS
Sbjct: 832 PIGQPGLHGIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLPGKAGASGF 891
Query: 1912 P-TEGPR-TSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG-----GTPKS 1963
P T+G PPG PG L G SG L G GL G G P KG G P
Sbjct: 892 PGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGP 951
Query: 1964 QAPLDLSLSLSLSLSPDVSTEASP----PRASQDIPCLDSSAPESGTP 2007
P+D +L S + P P+ Q +P SG P
Sbjct: 952 PGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQP 999
Score = 46.6 bits (109), Expect = 2e-04
Identities = 40/120 (33%), Positives = 45/120 (37%), Gaps = 15/120 (12%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSG-------DGRPPPLLQWPPPRLPGPP 1906
PV + AGN QP PGP P +++ G GR + P LPG P
Sbjct: 630 PVGEKGIQGVAGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQP 689
Query: 1907 PASPIP-------TEGPRTSRPPGP-GLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
IP G PPGP G GP G GR GL G G P PKG
Sbjct: 690 GLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKG 749
Score = 42.4 bits (98), Expect = 0.005
Identities = 39/131 (29%), Positives = 45/131 (34%), Gaps = 7/131 (5%)
Query: 1833 GNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPP 1892
GN G G + P P N +GD LP PG + L G +
Sbjct: 641 GNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGE 700
Query: 1893 PLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKG-----LGGS 1947
P + P LPGPP P P PG + EGP G G KG L G
Sbjct: 701 PGI--PGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGP 758
Query: 1948 DGEPASGSPKG 1958
G P KG
Sbjct: 759 PGPPGLPGFKG 769
Score = 42.0 bits (97), Expect = 0.006
Identities = 40/135 (29%), Positives = 48/135 (35%), Gaps = 16/135 (11%)
Query: 1842 GGGGLTSLSNNPPV-AHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPP 1900
G G++ NP + P P G+ QP PPG P DG P P Q P
Sbjct: 1131 GPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQ------DGIPGPAGQKGEP 1184
Query: 1901 RLPG-----PPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGS 1955
PG PP + + P PG GP G+ G G+ G G P S
Sbjct: 1185 GQPGFGNPGPPGLPGLSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPGSPG 1244
Query: 1956 P----KGGTPKSQAP 1966
P G P Q P
Sbjct: 1245 PALEGPKGNPGPQGP 1259
Score = 40.0 bits (92), Expect = 0.023
Identities = 37/125 (29%), Positives = 41/125 (32%), Gaps = 10/125 (8%)
Query: 1828 GCNSGGNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSG 1887
GC+ G D S G G P E G P P GP GPR G
Sbjct: 31 GCSPGSKCDCSGIKGEKGERGF--------PGLEGHPGLPGFPGPEGPP-GPRGQKGDDG 81
Query: 1888 -DGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGG 1946
G P P PP LPG P +P P G+ G G+ G G G
Sbjct: 82 IPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG 141
Query: 1947 SDGEP 1951
G P
Sbjct: 142 LQGPP 146
Score = 40.0 bits (92), Expect = 0.023
Identities = 40/139 (28%), Positives = 48/139 (34%), Gaps = 37/139 (26%)
Query: 1865 GNGDQPLPPGPGW--GPRSSLSGSGDGRPPPLLQWP-PPRLPGPPPASPIPTEGPRTSR- 1920
GN P PPG GP G PP L+ P PP LPGP + +GP+ +
Sbjct: 171 GNPGYPGPPGIQGLPGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKG 230
Query: 1921 ------PPGP--------------------GLLSSEGPSGKWSL-------GGRKGLGGS 1947
PPGP GL GP G + GG KG G
Sbjct: 231 EQGLQGPPGPPGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGE 290
Query: 1948 DGEPASGSPKGGTPKSQAP 1966
GEP G ++ P
Sbjct: 291 QGEPGKRGKPGKDGENGQP 309
Score = 40.0 bits (92), Expect = 0.023
Identities = 40/118 (33%), Positives = 45/118 (38%), Gaps = 17/118 (14%)
Query: 1865 GNGDQPLPPG-----PGWGPR---------SSLSGSGDGRPPPLLQWPPPRLPGPPPASP 1910
G+ P PPG PG G L G R P +Q PP LPGPP A+
Sbjct: 334 GDTGPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKGERGFPGIQGPPG-LPGPPGAAV 392
Query: 1911 IPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPKSQAPLD 1968
+ GP P G EGP G S+ G GL G G P P G P D
Sbjct: 393 MGPPGP-PGFPGERGQKGDEGPPG-ISIPGPPGLDGQPGAPGLPGPPGPAGPHIPPSD 448
Score = 39.3 bits (90), Expect = 0.040
Identities = 39/115 (33%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 1858 PTPENTAGNGDQPLPPGP-GWGPRSSLSG--SGDG-RPPPLLQWPP--------PRLPGP 1905
P + G P PPGP G RS + G DG + P L P P LPGP
Sbjct: 892 PGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGP 951
Query: 1906 P-PASPIPTEGPRTSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P P P PG PG+ GP G L G G G G+P P G
Sbjct: 952 PGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSGQPGLPGPPG 1006
Score = 38.9 bits (89), Expect = 0.052
Identities = 36/106 (33%), Positives = 40/106 (37%), Gaps = 16/106 (15%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRP------PPLLQWPP--PRLPGP 1905
P P P A G PPGP P +G P PP L P P LPGP
Sbjct: 381 PPGLPGPPGAAVMG----PPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGP 436
Query: 1906 P-PASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGE 1950
P PA P P PG S G G L G +G+ G G+
Sbjct: 437 PGPAGPHIPPSDEICEPGPPGPPGSPGDKG---LQGEQGVKGDKGD 479
Score = 38.5 bits (88), Expect = 0.068
Identities = 41/141 (29%), Positives = 48/141 (34%), Gaps = 23/141 (16%)
Query: 1842 GGGGLTSLSNNPPVAHPT-------PENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPL 1894
G GL + P + P+ PE G P PPG S+ GD PP +
Sbjct: 1327 GDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSIIIKGDAGPPGI 1386
Query: 1895 LQWP----------PPRLPGP--PPASP----IPTEGPRTSRPPGPGLLSSEGPSGKWSL 1938
P P LPGP PP P +P R PGL G G
Sbjct: 1387 PGQPGLKGLPGPQGPQGLPGPTGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGTRGLDGP 1446
Query: 1939 GGRKGLGGSDGEPASGSPKGG 1959
G GL G G P + S G
Sbjct: 1447 PGPDGLQGPPGPPGTSSVAHG 1467
Score = 37.7 bits (86), Expect = 0.12
Identities = 35/95 (36%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 1867 GDQPLPPGPGWGPRSSLSGS-GDGRPPPLLQWPPPRLPGPPPASPIP--TEGPRTSRPPG 1923
G + P PG+ + GS GD P L P LPG P A P P T PPG
Sbjct: 1080 GPKGEPGLPGYPGNPGIKGSVGD---PGL-----PGLPGTPGAKGQPGLPGFPGTPGPPG 1131
Query: 1924 PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P +S GP G L G G G G P P G
Sbjct: 1132 PKGIS--GPPGNPGLPGEPGPVGGGGHPGQPGPPG 1164
Score = 36.2 bits (82), Expect = 0.34
Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 3/112 (2%)
Query: 1838 SDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQW 1897
S G G L P + PT E G+ +P PGP +L GS + P L
Sbjct: 916 SGVPGLKGDDGLQGQPGLPGPTGEK--GSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPG 973
Query: 1898 PPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDG 1949
P + GP +P + + PGL GP G L G+ GL G G
Sbjct: 974 IPG-VSGPKGYQGLPGDPGQPGLSGQPGLPGPPGPKGNPGLPGQPGLIGPPG 1024
Score = 35.4 bits (80), Expect = 0.57
Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 28/124 (22%)
Query: 1853 PPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPP--LLQWPPPRLPGPPPASP 1910
P ++ P P G P PGP GP +G PP + + PP PG P
Sbjct: 414 PGISIPGPPGLDGQPGAPGLPGPP-GP------AGPHIPPSDEICEPGPPGPPGSPGDKG 466
Query: 1911 IPTE---------------GPRTSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPASG 1954
+ E G S PPG PGL GP G G+K G G+ +
Sbjct: 467 LQGEQGVKGDKGDTCFNCIGTGISGPPGQPGLPGLPGPPGSLGFPGQK---GEKGQAGAT 523
Query: 1955 SPKG 1958
PKG
Sbjct: 524 GPKG 527
Score = 35.4 bits (80), Expect = 0.57
Identities = 51/192 (26%), Positives = 66/192 (34%), Gaps = 42/192 (21%)
Query: 1867 GDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPP----------------PRLPGPPPASP 1910
G + LP PG GS G P +L +P P LPG P
Sbjct: 524 GPKGLPGIPGAPGAPGFPGS-KGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQDG 582
Query: 1911 IP-TEGPR----------TSRPPG----PGLLSSEGPSGKWSLG--------GRKGLGGS 1947
+P GP+ PPG PGL + GP G G G +G+ G+
Sbjct: 583 LPGLPGPKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGN 642
Query: 1948 DGEPASGSPKGGTPKS-QAPLDLSLSLSLSLSPDVSTEASPPRASQ-DIPCLDSSAPESG 2005
G+P PKG ++ P L + DV P Q +P + S E G
Sbjct: 643 PGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQPGLPGIPGSKGEPG 702
Query: 2006 TPMGALGDWPAP 2017
P L P P
Sbjct: 703 IPGIGLPGPPGP 714
Score = 35.4 bits (80), Expect = 0.57
Identities = 43/130 (33%), Positives = 51/130 (39%), Gaps = 15/130 (11%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGD-GRPPPLLQWPPP 1900
G G LS P + P P GN P PG GP GD G P P PP
Sbjct: 988 GDPGQPGLSGQPGL--PGPPGPKGNPGLPGQPGL-IGPPGLKGTIGDMGFPGPQGVEGPP 1044
Query: 1901 R---LPGPPPASPIPTE-----GPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPA 1952
+PG P + +P + P S PGL +G G G G+ GS G+P
Sbjct: 1045 GPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPG 1104
Query: 1953 -SGSPKGGTP 1961
G P GTP
Sbjct: 1105 LPGLP--GTP 1112
Score = 35.0 bits (79), Expect = 0.75
Identities = 40/143 (27%), Positives = 51/143 (35%), Gaps = 13/143 (9%)
Query: 1828 GCNSGGNVDDSDCSGGGGLTSLSNNP-PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGS 1886
GCN G + G G L P P P + G+ PGP P
Sbjct: 123 GCN--GTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPG 180
Query: 1887 GDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGG 1946
G P P P P P PP P P P G L+ +GP G+ G +GL G
Sbjct: 181 IQGLPGPT-GIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGE---KGEQGLQG 236
Query: 1947 SDGEPASGSPKGGTPKSQAPLDL 1969
G P G + + P+D+
Sbjct: 237 PPG------PPGQISEQKRPIDV 253
Score = 34.3 bits (77), Expect = 1.3
Identities = 46/168 (27%), Positives = 55/168 (32%), Gaps = 22/168 (13%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPG-PGW-GPRSSLSGSGDGRPPPLLQWPP 1899
G G L P P + G +P PG PG GP+ GD P L
Sbjct: 941 GSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPGDPGQPGLSG--Q 998
Query: 1900 PRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGG 1959
P LPGPP P P PGL+ GP G G G G G P G
Sbjct: 999 PGLPGPPGPKGNP------GLPGQPGLI---GPPGLKGTIGDMGFPGPQGVEGPPGPSGV 1049
Query: 1960 TPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTP 2007
+ +P L + P +S +P L E G P
Sbjct: 1050 PGQPGSP---------GLPGQKGDKGDPGISSIGLPGLPGPKGEPGLP 1088
Score = 33.5 bits (75), Expect = 2.2
Identities = 38/123 (30%), Positives = 45/123 (36%), Gaps = 26/123 (21%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPP-----PA 1908
P+ P P G P PGP + G + LQ PP GPP
Sbjct: 193 PIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPP----GPPGQISEQK 248
Query: 1909 SPIPTEG-------PRTSRPPGP-GLLSSEGPSG-----KWSLG--GRKGLGGSDGEPAS 1953
PI E P PPGP G+ GP G K G G++G G DGE +
Sbjct: 249 RPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGE--N 306
Query: 1954 GSP 1956
G P
Sbjct: 307 GQP 309
Score = 32.0 bits (71), Expect = 6.3
Identities = 36/128 (28%), Positives = 43/128 (33%), Gaps = 35/128 (27%)
Query: 1858 PTPENTAGNGDQPLPPGPGWGPRS----SLSGS-GDGRPPPLLQWPPPRLPGPP------ 1906
P P+ G PPGP P L G GD P + P LPGP
Sbjct: 1035 PGPQGVEG------PPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLP 1088
Query: 1907 --PASP-------------IPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEP 1951
P +P +P +P PG + GP G + G G G GEP
Sbjct: 1089 GYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKGISGPPGNPGLPGEP 1148
Query: 1952 ASGSPKGG 1959
P GG
Sbjct: 1149 ---GPVGG 1153
Score = 32.0 bits (71), Expect = 6.3
Identities = 36/122 (29%), Positives = 43/122 (35%), Gaps = 16/122 (13%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQP-LPPGPGWGPRSSLSGSGDGRPPPLLQWPPP 1900
G GL NP + + + G+ P LP PG + L G PP P
Sbjct: 1083 GEPGLPGYPGNPGI-----KGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPP----GPK 1133
Query: 1901 RLPGPP-----PASPIPTEGPRTSRPPGP-GLLSSEGPSGKWSLGGRKGLGGSDGEPASG 1954
+ GPP P P P G PGP G G G G+KG G G G
Sbjct: 1134 GISGPPGNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPG 1193
Query: 1955 SP 1956
P
Sbjct: 1194 PP 1195
>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapiens]
Length = 1343
Score = 51.6 bits (122), Expect = 8e-06
Identities = 45/150 (30%), Positives = 61/150 (40%), Gaps = 7/150 (4%)
Query: 1848 SLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPP 1907
SL +N P+ T G +P P GPG G G G G+PPPL + +L
Sbjct: 1023 SLQDNLQHMLSPPQITIGP-QRPAPSGPGGGSGGGSGGGGGGQPPPLQRGKSQQLTVSAA 1081
Query: 1908 ASPIPTEGPRTSRPP---GPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPKSQ 1964
P P+ G P GP + S + S+GG G GG G P SQ
Sbjct: 1082 QKPRPSSGNLLQSPEPSYGPARPRQQSLSKEGSIGGSGGSGGGGG--GGLKPSITKQHSQ 1139
Query: 1965 APLDLSLSLSLSLSPDVSTEASPPRASQDI 1994
P L+ ++ S V+ ++ P S DI
Sbjct: 1140 TPSTLNPTMPAS-ERTVAWVSNMPHLSADI 1168
Score = 34.3 bits (77), Expect = 1.3
Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 30/210 (14%)
Query: 401 HSPPGRAPRRPLLEGGGFFEDEDTSEGSELSPASSLRSQRRYSTDSSSSTSCYSPESSRG 460
H G P G+ + ED S G PA+S+ YS + S + ++
Sbjct: 965 HHRGGEPPGDTFAPFHGYSKSEDLSSGVPKPPAASILHSHSYSDEFGPSGTDFT------ 1018
Query: 461 AAGGPRKRRAPHGAEEGTAVPPKRPYGTQR-TPSTASAKTHARVLSMDGAGGDVLRPPLA 519
R++ + + PP+ G QR PS + G GG PPL
Sbjct: 1019 -----RRQLSLQDNLQHMLSPPQITIGPQRPAPSGPGGGSGGG----SGGGGGGQPPPLQ 1069
Query: 520 GCKAELEAQVGVEQ---AASEPVVLPAEARRGPAANQPGWRGELQEEGAVGGAAEETGRR 576
K++ + V Q +S ++ E GPA + + L +EG++GG+ G
Sbjct: 1070 RGKSQ-QLTVSAAQKPRPSSGNLLQSPEPSYGPARPR---QQSLSKEGSIGGSGGSGG-- 1123
Query: 577 DRSSSVRRTQAIRRRHN---AGSNPTPPAS 603
+I ++H+ + NPT PAS
Sbjct: 1124 --GGGGGLKPSITKQHSQTPSTLNPTMPAS 1151
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 51.6 bits (122), Expect = 8e-06
Identities = 51/139 (36%), Positives = 55/139 (39%), Gaps = 34/139 (24%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGS-------GDGRPP--PLLQWPP----- 1899
P P + T G P PPG GPR LS S G PP P Q PP
Sbjct: 620 PQGEPGLQGTQGVPGAPGPPGEA-GPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGS 678
Query: 1900 ------PRLPGPPPASPIPTEGPRTSRPPGP----------GLLSSEGPSGKWSLGGRKG 1943
P LPGP IP G PPGP G L G G+ L G+ G
Sbjct: 679 LGKCGDPGLPGPDGEPGIPGIG--FPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPG 736
Query: 1944 LGGSDGEPASGSPKG-GTP 1961
L G+ GEPA P G GTP
Sbjct: 737 LPGAKGEPAVAMPGGPGTP 755
Score = 47.0 bits (110), Expect = 2e-04
Identities = 54/192 (28%), Positives = 68/192 (35%), Gaps = 17/192 (8%)
Query: 1841 SGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGW-GPRSSLSGSGDGRPPPLLQWP- 1898
+G G T L PP P GD+ P PG G + ++ +G P + +P
Sbjct: 1166 AGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 1899 PPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
PP LPG GP SR PG GP G + G KG GS G P P G
Sbjct: 1226 PPGLPGAIIPGQTGNRGPPGSR-GSPGAPGPPGPPGSHVI-GIKGDKGSMGHPGPKGPPG 1283
Query: 1959 GTPKSQAPLDLSLSLSLSLSPDVSTEASP-PRASQDIPCLDSSAPESGTP--MGALGDWP 2015
P L T P PR E G P +G++G P
Sbjct: 1284 TAGDMGPPGRLGAP---------GTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP-P 1333
Query: 2016 APIEERESPAAQ 2027
PI + P +
Sbjct: 1334 GPIGPKGPPGVR 1345
Score = 40.0 bits (92), Expect = 0.023
Identities = 31/87 (35%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 1872 PPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEG 1931
PPGP GP+ GD P L P PGPP P P PG L G
Sbjct: 1332 PPGP-IGPKGPPGVRGD--PGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
Query: 1932 PSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P GK G+ G G GE + KG
Sbjct: 1389 PRGKPGKDGKPGTPGPAGEKGNKGSKG 1415
Score = 39.7 bits (91), Expect = 0.030
Identities = 40/114 (35%), Positives = 45/114 (39%), Gaps = 13/114 (11%)
Query: 1860 PENTAGNGDQPLPPGP----GWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEG 1915
P G+ P P GP G+GP+ G P PP GP + T
Sbjct: 597 PPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPG--PPGEAGPRGELSVSTPV 654
Query: 1916 PRTSRPPGP-GLLSSEGPSG-KWSLG--GRKGLGGSDGEP---ASGSPKGGTPK 1962
P PPGP G +GP G SLG G GL G DGEP G P PK
Sbjct: 655 PGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPK 708
Score = 38.9 bits (89), Expect = 0.052
Identities = 40/131 (30%), Positives = 45/131 (34%), Gaps = 20/131 (15%)
Query: 1833 GNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPP 1892
G + + G GL P VA P G G P G R + G+ P
Sbjct: 724 GKMGEPGLPGKPGLPGAKGEPAVAMP-----GGPGTPGFP-----GERGNSGEHGEIGLP 773
Query: 1893 PLLQWPPPRLPGPPPASPI--PTEGPRTSRPPG---PGLLSSEGPSGKWSLGGRKGLGGS 1947
L P LPG P + P P PPG P EGP G L G GL G
Sbjct: 774 GL-----PGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQ 828
Query: 1948 DGEPASGSPKG 1958
G PKG
Sbjct: 829 QGRRGKTGPKG 839
Score = 38.9 bits (89), Expect = 0.052
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 22/109 (20%)
Query: 1867 GDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPP----PASPIPTEGPRTSRPP 1922
G +P PPGP P G P + + PGPP PA P G P
Sbjct: 1061 GTRPGPPGPTGDP---------GLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGS----PG 1107
Query: 1923 GPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG--GTPKSQAPLDL 1969
PGL GP G G KG+ G G P P G G P S P+ +
Sbjct: 1108 SPGLPGKPGPHGDL---GFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGI 1153
Score = 38.1 bits (87), Expect = 0.088
Identities = 35/99 (35%), Positives = 41/99 (41%), Gaps = 21/99 (21%)
Query: 1865 GNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGP 1924
G+ P PPGP G R SG PP +PG P +S G P P
Sbjct: 354 GDEGTPGPPGPR-GARGPQGPSG-----------PPGVPGSPGSSRPGLRGA----PGWP 397
Query: 1925 GLLSSEGPSG---KWSLG--GRKGLGGSDGEPASGSPKG 1958
GL S+G G K ++G G G GS G P S P G
Sbjct: 398 GLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPG 436
Score = 38.1 bits (87), Expect = 0.088
Identities = 40/135 (29%), Positives = 50/135 (37%), Gaps = 32/135 (23%)
Query: 1855 VAHPTPENTAGNGDQPLPPG-------PGW-GPRSSLSGSGD----------------GR 1890
+ HP P+ G PPG PG GPR G G
Sbjct: 1273 MGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP 1332
Query: 1891 PPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPG----PGLLSSEGPSG-KWSLG--GRKG 1943
P P+ PP + G P I P + PPG PG+ GP G +LG G +G
Sbjct: 1333 PGPIGPKGPPGVRGDPGTLKI-ISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRG 1391
Query: 1944 LGGSDGEPASGSPKG 1958
G DG+P + P G
Sbjct: 1392 KPGKDGKPGTPGPAG 1406
Score = 37.7 bits (86), Expect = 0.12
Identities = 37/125 (29%), Positives = 44/125 (35%), Gaps = 20/125 (16%)
Query: 1839 DCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPG----PG-WGPRSSLSGSGDGRPPP 1893
D G GL P P P G P PPG PG GPR G+
Sbjct: 168 DAKGDPGLPGAPG--PQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGH 225
Query: 1894 LLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPAS 1953
+ L GPP PPG +++ GP + L G KG G+ GEP
Sbjct: 226 KGERGVKGLTGPPG-------------PPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGP 272
Query: 1954 GSPKG 1958
P G
Sbjct: 273 PGPSG 277
Score = 37.7 bits (86), Expect = 0.12
Identities = 38/142 (26%), Positives = 48/142 (33%), Gaps = 1/142 (0%)
Query: 1867 GDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGL 1926
G+ LP PG+ G + L +PG P P P PG+
Sbjct: 517 GNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGV 576
Query: 1927 LSSEGPSGKWSLGGRKGLGGSDGEPAS-GSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEA 1985
GP G+ +L G KG G G+P S GSP P L + V
Sbjct: 577 KGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAP 636
Query: 1986 SPPRASQDIPCLDSSAPESGTP 2007
PP + L S P G P
Sbjct: 637 GPPGEAGPRGELSVSTPVPGPP 658
Score = 33.5 bits (75), Expect = 2.2
Identities = 40/133 (30%), Positives = 49/133 (36%), Gaps = 15/133 (11%)
Query: 1858 PTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGP--PPASP--IPT 1913
P + G P PPGP GD P L P +PG P P + T
Sbjct: 420 PGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLG--SPGIPGVDGPKGEPGLLCT 477
Query: 1914 EGPRTSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG-----GTPKSQAPL 1967
+ P PPG PGL G G + GR+G G G P S G G P +Q
Sbjct: 478 QCPYIPGPPGLPGLPGLHGVKG---IPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGDP 534
Query: 1968 DLSLSLSLSLSPD 1980
L +L P+
Sbjct: 535 GLKGEKGETLQPE 547
Score = 33.5 bits (75), Expect = 2.2
Identities = 42/140 (30%), Positives = 47/140 (33%), Gaps = 14/140 (10%)
Query: 1833 GNVDDSDCSGGGGLTSLSNNP-PVAHPTPENTAGNGDQPLPPG-PGW-GPRSSLSGSGDG 1889
G D G G P P H P G P PG PG GP L G
Sbjct: 1068 GPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIK 1127
Query: 1890 R--PPPLLQWPP--PRLPGPPPASPIPTEGPRTSRPPGPG-------LLSSEGPSGKWSL 1938
PP ++ PP P PG P I + R P G L + GP G
Sbjct: 1128 GLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGA 1187
Query: 1939 GGRKGLGGSDGEPASGSPKG 1958
G KG G+ G P KG
Sbjct: 1188 QGAKGDRGAPGFPGLPGRKG 1207
Score = 31.6 bits (70), Expect = 8.3
Identities = 38/147 (25%), Positives = 44/147 (29%), Gaps = 33/147 (22%)
Query: 1842 GGGGLTSLSNNP-PVAHPTPENTAGNGDQPLPPG-------------------------P 1875
G GL L P P P P G+ P PG P
Sbjct: 976 GMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFP 1035
Query: 1876 GWGPRSSLSG----SGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEG 1931
G R L G GD P + P PGP +P + + PG G
Sbjct: 1036 GRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLG 1095
Query: 1932 PSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P+G G G GS G P P G
Sbjct: 1096 PAGP---EGAPGSPGSPGLPGKPGPHG 1119
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 51.6 bits (122), Expect = 8e-06
Identities = 51/139 (36%), Positives = 55/139 (39%), Gaps = 34/139 (24%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGS-------GDGRPP--PLLQWPP----- 1899
P P + T G P PPG GPR LS S G PP P Q PP
Sbjct: 620 PQGEPGLQGTQGVPGAPGPPGEA-GPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGS 678
Query: 1900 ------PRLPGPPPASPIPTEGPRTSRPPGP----------GLLSSEGPSGKWSLGGRKG 1943
P LPGP IP G PPGP G L G G+ L G+ G
Sbjct: 679 LGKCGDPGLPGPDGEPGIPGIG--FPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPG 736
Query: 1944 LGGSDGEPASGSPKG-GTP 1961
L G+ GEPA P G GTP
Sbjct: 737 LPGAKGEPAVAMPGGPGTP 755
Score = 47.0 bits (110), Expect = 2e-04
Identities = 54/192 (28%), Positives = 68/192 (35%), Gaps = 17/192 (8%)
Query: 1841 SGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGW-GPRSSLSGSGDGRPPPLLQWP- 1898
+G G T L PP P GD+ P PG G + ++ +G P + +P
Sbjct: 1166 AGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 1899 PPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
PP LPG GP SR PG GP G + G KG GS G P P G
Sbjct: 1226 PPGLPGAIIPGQTGNRGPPGSR-GSPGAPGPPGPPGSHVI-GIKGDKGSMGHPGPKGPPG 1283
Query: 1959 GTPKSQAPLDLSLSLSLSLSPDVSTEASP-PRASQDIPCLDSSAPESGTP--MGALGDWP 2015
P L T P PR E G P +G++G P
Sbjct: 1284 TAGDMGPPGRLGAP---------GTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP-P 1333
Query: 2016 APIEERESPAAQ 2027
PI + P +
Sbjct: 1334 GPIGPKGPPGVR 1345
Score = 40.0 bits (92), Expect = 0.023
Identities = 31/87 (35%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 1872 PPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEG 1931
PPGP GP+ GD P L P PGPP P P PG L G
Sbjct: 1332 PPGP-IGPKGPPGVRGD--PGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
Query: 1932 PSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P GK G+ G G GE + KG
Sbjct: 1389 PRGKPGKDGKPGTPGPAGEKGNKGSKG 1415
Score = 39.7 bits (91), Expect = 0.030
Identities = 40/114 (35%), Positives = 45/114 (39%), Gaps = 13/114 (11%)
Query: 1860 PENTAGNGDQPLPPGP----GWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEG 1915
P G+ P P GP G+GP+ G P PP GP + T
Sbjct: 597 PPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPG--PPGEAGPRGELSVSTPV 654
Query: 1916 PRTSRPPGP-GLLSSEGPSG-KWSLG--GRKGLGGSDGEP---ASGSPKGGTPK 1962
P PPGP G +GP G SLG G GL G DGEP G P PK
Sbjct: 655 PGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPK 708
Score = 38.9 bits (89), Expect = 0.052
Identities = 40/131 (30%), Positives = 45/131 (34%), Gaps = 20/131 (15%)
Query: 1833 GNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPP 1892
G + + G GL P VA P G G P G R + G+ P
Sbjct: 724 GKMGEPGLPGKPGLPGAKGEPAVAMP-----GGPGTPGFP-----GERGNSGEHGEIGLP 773
Query: 1893 PLLQWPPPRLPGPPPASPI--PTEGPRTSRPPG---PGLLSSEGPSGKWSLGGRKGLGGS 1947
L P LPG P + P P PPG P EGP G L G GL G
Sbjct: 774 GL-----PGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQ 828
Query: 1948 DGEPASGSPKG 1958
G PKG
Sbjct: 829 QGRRGKTGPKG 839
Score = 38.9 bits (89), Expect = 0.052
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 22/109 (20%)
Query: 1867 GDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPP----PASPIPTEGPRTSRPP 1922
G +P PPGP P G P + + PGPP PA P G P
Sbjct: 1061 GTRPGPPGPTGDP---------GLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGS----PG 1107
Query: 1923 GPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG--GTPKSQAPLDL 1969
PGL GP G G KG+ G G P P G G P S P+ +
Sbjct: 1108 SPGLPGKPGPHGDL---GFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGI 1153
Score = 38.1 bits (87), Expect = 0.088
Identities = 35/99 (35%), Positives = 41/99 (41%), Gaps = 21/99 (21%)
Query: 1865 GNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGP 1924
G+ P PPGP G R SG PP +PG P +S G P P
Sbjct: 354 GDEGTPGPPGPR-GARGPQGPSG-----------PPGVPGSPGSSRPGLRGA----PGWP 397
Query: 1925 GLLSSEGPSG---KWSLG--GRKGLGGSDGEPASGSPKG 1958
GL S+G G K ++G G G GS G P S P G
Sbjct: 398 GLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPG 436
Score = 38.1 bits (87), Expect = 0.088
Identities = 40/135 (29%), Positives = 50/135 (37%), Gaps = 32/135 (23%)
Query: 1855 VAHPTPENTAGNGDQPLPPG-------PGW-GPRSSLSGSGD----------------GR 1890
+ HP P+ G PPG PG GPR G G
Sbjct: 1273 MGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP 1332
Query: 1891 PPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPG----PGLLSSEGPSG-KWSLG--GRKG 1943
P P+ PP + G P I P + PPG PG+ GP G +LG G +G
Sbjct: 1333 PGPIGPKGPPGVRGDPGTLKI-ISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRG 1391
Query: 1944 LGGSDGEPASGSPKG 1958
G DG+P + P G
Sbjct: 1392 KPGKDGKPGTPGPAG 1406
Score = 37.7 bits (86), Expect = 0.12
Identities = 37/125 (29%), Positives = 44/125 (35%), Gaps = 20/125 (16%)
Query: 1839 DCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPG----PG-WGPRSSLSGSGDGRPPP 1893
D G GL P P P G P PPG PG GPR G+
Sbjct: 168 DAKGDPGLPGAPG--PQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGH 225
Query: 1894 LLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPAS 1953
+ L GPP PPG +++ GP + L G KG G+ GEP
Sbjct: 226 KGERGVKGLTGPPG-------------PPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGP 272
Query: 1954 GSPKG 1958
P G
Sbjct: 273 PGPSG 277
Score = 37.7 bits (86), Expect = 0.12
Identities = 38/142 (26%), Positives = 48/142 (33%), Gaps = 1/142 (0%)
Query: 1867 GDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGL 1926
G+ LP PG+ G + L +PG P P P PG+
Sbjct: 517 GNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGV 576
Query: 1927 LSSEGPSGKWSLGGRKGLGGSDGEPAS-GSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEA 1985
GP G+ +L G KG G G+P S GSP P L + V
Sbjct: 577 KGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAP 636
Query: 1986 SPPRASQDIPCLDSSAPESGTP 2007
PP + L S P G P
Sbjct: 637 GPPGEAGPRGELSVSTPVPGPP 658
Score = 33.5 bits (75), Expect = 2.2
Identities = 40/133 (30%), Positives = 49/133 (36%), Gaps = 15/133 (11%)
Query: 1858 PTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGP--PPASP--IPT 1913
P + G P PPGP GD P L P +PG P P + T
Sbjct: 420 PGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLG--SPGIPGVDGPKGEPGLLCT 477
Query: 1914 EGPRTSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG-----GTPKSQAPL 1967
+ P PPG PGL G G + GR+G G G P S G G P +Q
Sbjct: 478 QCPYIPGPPGLPGLPGLHGVKG---IPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGDP 534
Query: 1968 DLSLSLSLSLSPD 1980
L +L P+
Sbjct: 535 GLKGEKGETLQPE 547
Score = 33.5 bits (75), Expect = 2.2
Identities = 42/140 (30%), Positives = 47/140 (33%), Gaps = 14/140 (10%)
Query: 1833 GNVDDSDCSGGGGLTSLSNNP-PVAHPTPENTAGNGDQPLPPG-PGW-GPRSSLSGSGDG 1889
G D G G P P H P G P PG PG GP L G
Sbjct: 1068 GPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIK 1127
Query: 1890 R--PPPLLQWPP--PRLPGPPPASPIPTEGPRTSRPPGPG-------LLSSEGPSGKWSL 1938
PP ++ PP P PG P I + R P G L + GP G
Sbjct: 1128 GLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGA 1187
Query: 1939 GGRKGLGGSDGEPASGSPKG 1958
G KG G+ G P KG
Sbjct: 1188 QGAKGDRGAPGFPGLPGRKG 1207
Score = 31.6 bits (70), Expect = 8.3
Identities = 38/147 (25%), Positives = 44/147 (29%), Gaps = 33/147 (22%)
Query: 1842 GGGGLTSLSNNP-PVAHPTPENTAGNGDQPLPPG-------------------------P 1875
G GL L P P P P G+ P PG P
Sbjct: 976 GMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFP 1035
Query: 1876 GWGPRSSLSG----SGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEG 1931
G R L G GD P + P PGP +P + + PG G
Sbjct: 1036 GRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLG 1095
Query: 1932 PSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P+G G G GS G P P G
Sbjct: 1096 PAGP---EGAPGSPGSPGLPGKPGPHG 1119
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 51.6 bits (122), Expect = 8e-06
Identities = 51/139 (36%), Positives = 55/139 (39%), Gaps = 34/139 (24%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGS-------GDGRPP--PLLQWPP----- 1899
P P + T G P PPG GPR LS S G PP P Q PP
Sbjct: 620 PQGEPGLQGTQGVPGAPGPPGEA-GPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGS 678
Query: 1900 ------PRLPGPPPASPIPTEGPRTSRPPGP----------GLLSSEGPSGKWSLGGRKG 1943
P LPGP IP G PPGP G L G G+ L G+ G
Sbjct: 679 LGKCGDPGLPGPDGEPGIPGIG--FPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPG 736
Query: 1944 LGGSDGEPASGSPKG-GTP 1961
L G+ GEPA P G GTP
Sbjct: 737 LPGAKGEPAVAMPGGPGTP 755
Score = 47.0 bits (110), Expect = 2e-04
Identities = 54/192 (28%), Positives = 68/192 (35%), Gaps = 17/192 (8%)
Query: 1841 SGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGW-GPRSSLSGSGDGRPPPLLQWP- 1898
+G G T L PP P GD+ P PG G + ++ +G P + +P
Sbjct: 1166 AGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 1899 PPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
PP LPG GP SR PG GP G + G KG GS G P P G
Sbjct: 1226 PPGLPGAIIPGQTGNRGPPGSR-GSPGAPGPPGPPGSHVI-GIKGDKGSMGHPGPKGPPG 1283
Query: 1959 GTPKSQAPLDLSLSLSLSLSPDVSTEASP-PRASQDIPCLDSSAPESGTP--MGALGDWP 2015
P L T P PR E G P +G++G P
Sbjct: 1284 TAGDMGPPGRLGAP---------GTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP-P 1333
Query: 2016 APIEERESPAAQ 2027
PI + P +
Sbjct: 1334 GPIGPKGPPGVR 1345
Score = 40.0 bits (92), Expect = 0.023
Identities = 31/87 (35%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 1872 PPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEG 1931
PPGP GP+ GD P L P PGPP P P PG L G
Sbjct: 1332 PPGP-IGPKGPPGVRGD--PGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
Query: 1932 PSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P GK G+ G G GE + KG
Sbjct: 1389 PRGKPGKDGKPGTPGPAGEKGNKGSKG 1415
Score = 39.7 bits (91), Expect = 0.030
Identities = 40/114 (35%), Positives = 45/114 (39%), Gaps = 13/114 (11%)
Query: 1860 PENTAGNGDQPLPPGP----GWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEG 1915
P G+ P P GP G+GP+ G P PP GP + T
Sbjct: 597 PPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPG--PPGEAGPRGELSVSTPV 654
Query: 1916 PRTSRPPGP-GLLSSEGPSG-KWSLG--GRKGLGGSDGEP---ASGSPKGGTPK 1962
P PPGP G +GP G SLG G GL G DGEP G P PK
Sbjct: 655 PGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPK 708
Score = 38.9 bits (89), Expect = 0.052
Identities = 40/131 (30%), Positives = 45/131 (34%), Gaps = 20/131 (15%)
Query: 1833 GNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPP 1892
G + + G GL P VA P G G P G R + G+ P
Sbjct: 724 GKMGEPGLPGKPGLPGAKGEPAVAMP-----GGPGTPGFP-----GERGNSGEHGEIGLP 773
Query: 1893 PLLQWPPPRLPGPPPASPI--PTEGPRTSRPPG---PGLLSSEGPSGKWSLGGRKGLGGS 1947
L P LPG P + P P PPG P EGP G L G GL G
Sbjct: 774 GL-----PGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQ 828
Query: 1948 DGEPASGSPKG 1958
G PKG
Sbjct: 829 QGRRGKTGPKG 839
Score = 38.9 bits (89), Expect = 0.052
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 22/109 (20%)
Query: 1867 GDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPP----PASPIPTEGPRTSRPP 1922
G +P PPGP P G P + + PGPP PA P G P
Sbjct: 1061 GTRPGPPGPTGDP---------GLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGS----PG 1107
Query: 1923 GPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG--GTPKSQAPLDL 1969
PGL GP G G KG+ G G P P G G P S P+ +
Sbjct: 1108 SPGLPGKPGPHGDL---GFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGI 1153
Score = 38.1 bits (87), Expect = 0.088
Identities = 35/99 (35%), Positives = 41/99 (41%), Gaps = 21/99 (21%)
Query: 1865 GNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGP 1924
G+ P PPGP G R SG PP +PG P +S G P P
Sbjct: 354 GDEGTPGPPGPR-GARGPQGPSG-----------PPGVPGSPGSSRPGLRGA----PGWP 397
Query: 1925 GLLSSEGPSG---KWSLG--GRKGLGGSDGEPASGSPKG 1958
GL S+G G K ++G G G GS G P S P G
Sbjct: 398 GLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPG 436
Score = 38.1 bits (87), Expect = 0.088
Identities = 40/135 (29%), Positives = 50/135 (37%), Gaps = 32/135 (23%)
Query: 1855 VAHPTPENTAGNGDQPLPPG-------PGW-GPRSSLSGSGD----------------GR 1890
+ HP P+ G PPG PG GPR G G
Sbjct: 1273 MGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP 1332
Query: 1891 PPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPG----PGLLSSEGPSG-KWSLG--GRKG 1943
P P+ PP + G P I P + PPG PG+ GP G +LG G +G
Sbjct: 1333 PGPIGPKGPPGVRGDPGTLKI-ISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRG 1391
Query: 1944 LGGSDGEPASGSPKG 1958
G DG+P + P G
Sbjct: 1392 KPGKDGKPGTPGPAG 1406
Score = 37.7 bits (86), Expect = 0.12
Identities = 37/125 (29%), Positives = 44/125 (35%), Gaps = 20/125 (16%)
Query: 1839 DCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPG----PG-WGPRSSLSGSGDGRPPP 1893
D G GL P P P G P PPG PG GPR G+
Sbjct: 168 DAKGDPGLPGAPG--PQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGH 225
Query: 1894 LLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPAS 1953
+ L GPP PPG +++ GP + L G KG G+ GEP
Sbjct: 226 KGERGVKGLTGPPG-------------PPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGP 272
Query: 1954 GSPKG 1958
P G
Sbjct: 273 PGPSG 277
Score = 37.7 bits (86), Expect = 0.12
Identities = 38/142 (26%), Positives = 48/142 (33%), Gaps = 1/142 (0%)
Query: 1867 GDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGL 1926
G+ LP PG+ G + L +PG P P P PG+
Sbjct: 517 GNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGV 576
Query: 1927 LSSEGPSGKWSLGGRKGLGGSDGEPAS-GSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEA 1985
GP G+ +L G KG G G+P S GSP P L + V
Sbjct: 577 KGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAP 636
Query: 1986 SPPRASQDIPCLDSSAPESGTP 2007
PP + L S P G P
Sbjct: 637 GPPGEAGPRGELSVSTPVPGPP 658
Score = 33.5 bits (75), Expect = 2.2
Identities = 40/133 (30%), Positives = 49/133 (36%), Gaps = 15/133 (11%)
Query: 1858 PTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGP--PPASP--IPT 1913
P + G P PPGP GD P L P +PG P P + T
Sbjct: 420 PGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLG--SPGIPGVDGPKGEPGLLCT 477
Query: 1914 EGPRTSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG-----GTPKSQAPL 1967
+ P PPG PGL G G + GR+G G G P S G G P +Q
Sbjct: 478 QCPYIPGPPGLPGLPGLHGVKG---IPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGDP 534
Query: 1968 DLSLSLSLSLSPD 1980
L +L P+
Sbjct: 535 GLKGEKGETLQPE 547
Score = 33.5 bits (75), Expect = 2.2
Identities = 42/140 (30%), Positives = 47/140 (33%), Gaps = 14/140 (10%)
Query: 1833 GNVDDSDCSGGGGLTSLSNNP-PVAHPTPENTAGNGDQPLPPG-PGW-GPRSSLSGSGDG 1889
G D G G P P H P G P PG PG GP L G
Sbjct: 1068 GPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIK 1127
Query: 1890 R--PPPLLQWPP--PRLPGPPPASPIPTEGPRTSRPPGPG-------LLSSEGPSGKWSL 1938
PP ++ PP P PG P I + R P G L + GP G
Sbjct: 1128 GLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGA 1187
Query: 1939 GGRKGLGGSDGEPASGSPKG 1958
G KG G+ G P KG
Sbjct: 1188 QGAKGDRGAPGFPGLPGRKG 1207
Score = 31.6 bits (70), Expect = 8.3
Identities = 38/147 (25%), Positives = 44/147 (29%), Gaps = 33/147 (22%)
Query: 1842 GGGGLTSLSNNP-PVAHPTPENTAGNGDQPLPPG-------------------------P 1875
G GL L P P P P G+ P PG P
Sbjct: 976 GMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFP 1035
Query: 1876 GWGPRSSLSG----SGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEG 1931
G R L G GD P + P PGP +P + + PG G
Sbjct: 1036 GRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLG 1095
Query: 1932 PSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P+G G G GS G P P G
Sbjct: 1096 PAGP---EGAPGSPGSPGLPGKPGPHG 1119
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 51.6 bits (122), Expect = 8e-06
Identities = 51/139 (36%), Positives = 55/139 (39%), Gaps = 34/139 (24%)
Query: 1854 PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGS-------GDGRPP--PLLQWPP----- 1899
P P + T G P PPG GPR LS S G PP P Q PP
Sbjct: 620 PQGEPGLQGTQGVPGAPGPPGEA-GPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGS 678
Query: 1900 ------PRLPGPPPASPIPTEGPRTSRPPGP----------GLLSSEGPSGKWSLGGRKG 1943
P LPGP IP G PPGP G L G G+ L G+ G
Sbjct: 679 LGKCGDPGLPGPDGEPGIPGIG--FPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPG 736
Query: 1944 LGGSDGEPASGSPKG-GTP 1961
L G+ GEPA P G GTP
Sbjct: 737 LPGAKGEPAVAMPGGPGTP 755
Score = 47.0 bits (110), Expect = 2e-04
Identities = 54/192 (28%), Positives = 68/192 (35%), Gaps = 17/192 (8%)
Query: 1841 SGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGW-GPRSSLSGSGDGRPPPLLQWP- 1898
+G G T L PP P GD+ P PG G + ++ +G P + +P
Sbjct: 1166 AGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPG 1225
Query: 1899 PPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
PP LPG GP SR PG GP G + G KG GS G P P G
Sbjct: 1226 PPGLPGAIIPGQTGNRGPPGSR-GSPGAPGPPGPPGSHVI-GIKGDKGSMGHPGPKGPPG 1283
Query: 1959 GTPKSQAPLDLSLSLSLSLSPDVSTEASP-PRASQDIPCLDSSAPESGTP--MGALGDWP 2015
P L T P PR E G P +G++G P
Sbjct: 1284 TAGDMGPPGRLGAP---------GTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP-P 1333
Query: 2016 APIEERESPAAQ 2027
PI + P +
Sbjct: 1334 GPIGPKGPPGVR 1345
Score = 40.0 bits (92), Expect = 0.023
Identities = 31/87 (35%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 1872 PPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEG 1931
PPGP GP+ GD P L P PGPP P P PG L G
Sbjct: 1332 PPGP-IGPKGPPGVRGD--PGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
Query: 1932 PSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P GK G+ G G GE + KG
Sbjct: 1389 PRGKPGKDGKPGTPGPAGEKGNKGSKG 1415
Score = 39.7 bits (91), Expect = 0.030
Identities = 40/114 (35%), Positives = 45/114 (39%), Gaps = 13/114 (11%)
Query: 1860 PENTAGNGDQPLPPGP----GWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEG 1915
P G+ P P GP G+GP+ G P PP GP + T
Sbjct: 597 PPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPG--PPGEAGPRGELSVSTPV 654
Query: 1916 PRTSRPPGP-GLLSSEGPSG-KWSLG--GRKGLGGSDGEP---ASGSPKGGTPK 1962
P PPGP G +GP G SLG G GL G DGEP G P PK
Sbjct: 655 PGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIGFPGPPGPK 708
Score = 38.9 bits (89), Expect = 0.052
Identities = 40/131 (30%), Positives = 45/131 (34%), Gaps = 20/131 (15%)
Query: 1833 GNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPP 1892
G + + G GL P VA P G G P G R + G+ P
Sbjct: 724 GKMGEPGLPGKPGLPGAKGEPAVAMP-----GGPGTPGFP-----GERGNSGEHGEIGLP 773
Query: 1893 PLLQWPPPRLPGPPPASPI--PTEGPRTSRPPG---PGLLSSEGPSGKWSLGGRKGLGGS 1947
L P LPG P + P P PPG P EGP G L G GL G
Sbjct: 774 GL-----PGLPGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQ 828
Query: 1948 DGEPASGSPKG 1958
G PKG
Sbjct: 829 QGRRGKTGPKG 839
Score = 38.9 bits (89), Expect = 0.052
Identities = 36/109 (33%), Positives = 42/109 (38%), Gaps = 22/109 (20%)
Query: 1867 GDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPP----PASPIPTEGPRTSRPP 1922
G +P PPGP P G P + + PGPP PA P G P
Sbjct: 1061 GTRPGPPGPTGDP---------GLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGS----PG 1107
Query: 1923 GPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG--GTPKSQAPLDL 1969
PGL GP G G KG+ G G P P G G P S P+ +
Sbjct: 1108 SPGLPGKPGPHGDL---GFKGIKGLLGPPGIRGPPGLPGFPGSPGPMGI 1153
Score = 38.1 bits (87), Expect = 0.088
Identities = 35/99 (35%), Positives = 41/99 (41%), Gaps = 21/99 (21%)
Query: 1865 GNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGP 1924
G+ P PPGP G R SG PP +PG P +S G P P
Sbjct: 354 GDEGTPGPPGPR-GARGPQGPSG-----------PPGVPGSPGSSRPGLRGA----PGWP 397
Query: 1925 GLLSSEGPSG---KWSLG--GRKGLGGSDGEPASGSPKG 1958
GL S+G G K ++G G G GS G P S P G
Sbjct: 398 GLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPG 436
Score = 38.1 bits (87), Expect = 0.088
Identities = 40/135 (29%), Positives = 50/135 (37%), Gaps = 32/135 (23%)
Query: 1855 VAHPTPENTAGNGDQPLPPG-------PGW-GPRSSLSGSGD----------------GR 1890
+ HP P+ G PPG PG GPR G G
Sbjct: 1273 MGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP 1332
Query: 1891 PPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPG----PGLLSSEGPSG-KWSLG--GRKG 1943
P P+ PP + G P I P + PPG PG+ GP G +LG G +G
Sbjct: 1333 PGPIGPKGPPGVRGDPGTLKI-ISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRG 1391
Query: 1944 LGGSDGEPASGSPKG 1958
G DG+P + P G
Sbjct: 1392 KPGKDGKPGTPGPAG 1406
Score = 37.7 bits (86), Expect = 0.12
Identities = 37/125 (29%), Positives = 44/125 (35%), Gaps = 20/125 (16%)
Query: 1839 DCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPG----PG-WGPRSSLSGSGDGRPPP 1893
D G GL P P P G P PPG PG GPR G+
Sbjct: 168 DAKGDPGLPGAPG--PQGLPGPPGFPGPVGPPGPPGFFGFPGAMGPRGPKGHMGERVIGH 225
Query: 1894 LLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPAS 1953
+ L GPP PPG +++ GP + L G KG G+ GEP
Sbjct: 226 KGERGVKGLTGPPG-------------PPGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGP 272
Query: 1954 GSPKG 1958
P G
Sbjct: 273 PGPSG 277
Score = 37.7 bits (86), Expect = 0.12
Identities = 38/142 (26%), Positives = 48/142 (33%), Gaps = 1/142 (0%)
Query: 1867 GDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGL 1926
G+ LP PG+ G + L +PG P P P PG+
Sbjct: 517 GNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPGRKGLDGIPGTPGV 576
Query: 1927 LSSEGPSGKWSLGGRKGLGGSDGEPAS-GSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEA 1985
GP G+ +L G KG G G+P S GSP P L + V
Sbjct: 577 KGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAP 636
Query: 1986 SPPRASQDIPCLDSSAPESGTP 2007
PP + L S P G P
Sbjct: 637 GPPGEAGPRGELSVSTPVPGPP 658
Score = 33.5 bits (75), Expect = 2.2
Identities = 40/133 (30%), Positives = 49/133 (36%), Gaps = 15/133 (11%)
Query: 1858 PTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGP--PPASP--IPT 1913
P + G P PPGP GD P L P +PG P P + T
Sbjct: 420 PGCAGSPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLG--SPGIPGVDGPKGEPGLLCT 477
Query: 1914 EGPRTSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG-----GTPKSQAPL 1967
+ P PPG PGL G G + GR+G G G P S G G P +Q
Sbjct: 478 QCPYIPGPPGLPGLPGLHGVKG---IPGRQGAAGLKGSPGSPGNTGLPGFPGFPGAQGDP 534
Query: 1968 DLSLSLSLSLSPD 1980
L +L P+
Sbjct: 535 GLKGEKGETLQPE 547
Score = 33.5 bits (75), Expect = 2.2
Identities = 42/140 (30%), Positives = 47/140 (33%), Gaps = 14/140 (10%)
Query: 1833 GNVDDSDCSGGGGLTSLSNNP-PVAHPTPENTAGNGDQPLPPG-PGW-GPRSSLSGSGDG 1889
G D G G P P H P G P PG PG GP L G
Sbjct: 1068 GPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPEGAPGSPGSPGLPGKPGPHGDLGFKGIK 1127
Query: 1890 R--PPPLLQWPP--PRLPGPPPASPIPTEGPRTSRPPGPG-------LLSSEGPSGKWSL 1938
PP ++ PP P PG P I + R P G L + GP G
Sbjct: 1128 GLLGPPGIRGPPGLPGFPGSPGPMGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGA 1187
Query: 1939 GGRKGLGGSDGEPASGSPKG 1958
G KG G+ G P KG
Sbjct: 1188 QGAKGDRGAPGFPGLPGRKG 1207
Score = 31.6 bits (70), Expect = 8.3
Identities = 38/147 (25%), Positives = 44/147 (29%), Gaps = 33/147 (22%)
Query: 1842 GGGGLTSLSNNP-PVAHPTPENTAGNGDQPLPPG-------------------------P 1875
G GL L P P P P G+ P PG P
Sbjct: 976 GMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFP 1035
Query: 1876 GWGPRSSLSG----SGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEG 1931
G R L G GD P + P PGP +P + + PG G
Sbjct: 1036 GRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLG 1095
Query: 1932 PSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P+G G G GS G P P G
Sbjct: 1096 PAGP---EGAPGSPGSPGLPGKPGPHG 1119
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 50.8 bits (120), Expect = 1e-05
Identities = 47/145 (32%), Positives = 56/145 (38%), Gaps = 24/145 (16%)
Query: 1842 GGGGLTSLSNNP----PVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSG-------DGR 1890
GG G+ + +P P P + G +P PPGP GPR G DG
Sbjct: 531 GGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPS-GPRGQPGVMGFPGPKGNDGA 589
Query: 1891 PPPLLQWPPPRLPGP--PPASPIPTEGPRTSRPPGP-------GLLSSEGPSGKWSLGGR 1941
P + P PGP PP T GP+ PPGP G GP G L G
Sbjct: 590 PGKNGERGGPGGPGPQGPPGKNGET-GPQG--PPGPTGPGGDKGDTGPPGPQGLQGLPGT 646
Query: 1942 KGLGGSDGEPASGSPKGGTPKSQAP 1966
G G +G+P PKG AP
Sbjct: 647 GGPPGENGKPGEPGPKGDAGAPGAP 671
Score = 46.6 bits (109), Expect = 2e-04
Identities = 36/108 (33%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 1858 PTPENTAGNGDQPLPPG---PGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIP-- 1912
P P TAG P G P P S+ + G P P PGPP + P
Sbjct: 335 PGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGG 394
Query: 1913 --TEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
GP P PGL+ + GP G G GL G GEP KG
Sbjct: 395 KGEMGP-AGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKG 441
Score = 43.9 bits (102), Expect = 0.002
Identities = 36/112 (32%), Positives = 43/112 (38%), Gaps = 14/112 (12%)
Query: 1860 PENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPR-LPGPPPAS-----PIPT 1913
P AG P GP GP+ G P +P R LPGPP ++ P P+
Sbjct: 838 PPGVAGPPGGSGPAGPP-GPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPS 896
Query: 1914 EGPRTSRPPG-------PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
P PPG PG GP G G KG G+ G P + P G
Sbjct: 897 GSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLG 948
Score = 43.1 bits (100), Expect = 0.003
Identities = 44/147 (29%), Positives = 53/147 (36%), Gaps = 26/147 (17%)
Query: 1832 GGNVDDSDCSGGGGLTSL--SNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDG 1889
GG+ D+ G GL L + PP + P GD P PG + G+
Sbjct: 626 GGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGG--KGDAGAPGER 683
Query: 1890 RPPPLLQWP-------PPRL---------PGPPPASPIPTEGPRTSRPPGPGLLSSEGPS 1933
PP L P PP PGPP A+ P P G L S GP
Sbjct: 684 GPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTP---GLQGMPGERGGLGSPGPK 740
Query: 1934 GKWSLGGRKGLGGSDGEPASGSPKGGT 1960
G G G G+DG P P+G T
Sbjct: 741 GD---KGEPGGPGADGVPGKDGPRGPT 764
Score = 43.1 bits (100), Expect = 0.003
Identities = 42/140 (30%), Positives = 52/140 (37%), Gaps = 20/140 (14%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGW-----GPRSSLSGSGD-GRPPPLL 1895
G GG L P +A P + G + PPGP G G G+ G P
Sbjct: 780 GEGGAPGL---PGIAGP--RGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKG 834
Query: 1896 QWPPPRLPGPP----PASPIPTEGPRTSR--PPGPGLLS---SEGPSGKWSLGGRKGLGG 1946
+ PP + GPP PA P +G + R P GPG + G G G G G
Sbjct: 835 EGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPG 894
Query: 1947 SDGEPASGSPKGGTPKSQAP 1966
G P P G + AP
Sbjct: 895 PSGSPGKDGPPGPAGNTGAP 914
Score = 42.7 bits (99), Expect = 0.004
Identities = 41/137 (29%), Positives = 52/137 (37%), Gaps = 15/137 (10%)
Query: 1830 NSGGNVDDSDCSGGGGLTSLSNNP-PVAHPTPENTAGNGDQPLPPG-PGW-GPRSSLSGS 1886
N D D G + L+ P P P P G P PG PG+ GP +
Sbjct: 150 NYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQA 209
Query: 1887 GDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRP-----PGP-GLLSSEGPSGKWSLGG 1940
G PP PP GP + E R RP PGP G+ G G + G
Sbjct: 210 GPSGPPG-----PPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKG 264
Query: 1941 RKGLGGSDGEPA-SGSP 1956
+G G +GE +G+P
Sbjct: 265 HRGFDGRNGEKGETGAP 281
Score = 42.4 bits (98), Expect = 0.005
Identities = 34/100 (34%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 1860 PENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTS 1919
P AGN P PG GP+ G+ P PP PGP + I T +
Sbjct: 904 PPGPAGNTGAPGSPGVS-GPKGDAGQPGEKGSPGAQG--PPGAPGPLGIAGI-TGARGLA 959
Query: 1920 RPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKG 1958
PPG PG S GP G G+ G G GE P+G
Sbjct: 960 GPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQG 999
Score = 40.0 bits (92), Expect = 0.023
Identities = 37/116 (31%), Positives = 44/116 (37%), Gaps = 11/116 (9%)
Query: 1858 PTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPP-PLLQWPPPRLPGPPPASPIPTE-G 1915
P P+ G + P GP GP GD PP P P GPP + P E G
Sbjct: 602 PGPQGPPGKNGETGPQGPP-GPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPG 660
Query: 1916 PR-----TSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPKSQAP 1966
P+ P G G + G G L G GL G G P P+GG + P
Sbjct: 661 PKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPP---GPEGGKGAAGPP 713
Score = 39.7 bits (91), Expect = 0.030
Identities = 42/159 (26%), Positives = 57/159 (35%), Gaps = 9/159 (5%)
Query: 1858 PTPENTAGNGDQPLPPGPGWGP--RSSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTEG 1915
P P+ AG P PPG P + + +G P L+ P PGP A+ P
Sbjct: 371 PGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGP--PGPAGANGAPGLR 428
Query: 1916 PRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPKSQAPLDLSLSLSL 1975
P G GP G+ G G+ G+ GE K G+P L +
Sbjct: 429 GGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDG----KDGSPGEPGANGLPGAAGE 484
Query: 1976 SLSPDVSTEASPPR-ASQDIPCLDSSAPESGTPMGALGD 2013
+P A P + P + AP P GA G+
Sbjct: 485 RGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGE 523
Score = 39.7 bits (91), Expect = 0.030
Identities = 41/146 (28%), Positives = 49/146 (33%), Gaps = 25/146 (17%)
Query: 1844 GGLTSLSNNPPVAHPTPENTAGNGDQPLPPG----------PGWGPRSSLSGSGDGRPPP 1893
GG N P P G P PG PG + L G+ R P
Sbjct: 429 GGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAP 488
Query: 1894 LLQWP--PPRLPG----------PPPASPIPTEGP--RTSRPPGPGLLSSEGPSGKWSLG 1939
+ P P +PG P PA P G R P GPG+ G G
Sbjct: 489 GFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSD 548
Query: 1940 GRKGLGGSDGEPASGSPKGGT-PKSQ 1964
G+ G GS GE P G + P+ Q
Sbjct: 549 GKPGPPGSQGESGRPGPPGPSGPRGQ 574
Score = 38.9 bits (89), Expect = 0.052
Identities = 51/173 (29%), Positives = 62/173 (35%), Gaps = 36/173 (20%)
Query: 1860 PENTAGN-GDQPLPPGPGW-GPRSSLSGSG-DGRPPPLLQWPPPRLPGPPPASPIPTEGP 1916
P AG G +P GPG G S G G DG+P P PG S P
Sbjct: 517 PRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGP---------PGSQGESGRPG--- 564
Query: 1917 RTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGT--PKSQAPLDLSLSLS 1974
PPGP GP G+ + G G G+DG P +GG P Q P +
Sbjct: 565 ----PPGPS-----GPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETG 615
Query: 1975 LSLSPDVS--------TEASPPRASQDIPCLDSSAPESGTP--MGALGDWPAP 2017
P + T P+ Q +P E+G P G GD AP
Sbjct: 616 PQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAP 668
Score = 38.5 bits (88), Expect = 0.068
Identities = 71/270 (26%), Positives = 89/270 (32%), Gaps = 40/270 (14%)
Query: 326 PPG--GPA-PEGSDTDP-----PSEAELPASPD----AGVPSDDTL---RSFDT---VIG 367
PPG GP+ P G D + P E LP P AG+P + R FD G
Sbjct: 217 PPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKG 276
Query: 368 AGTPPGLAEPLLVVRPKDLALLRPSKRQPPLRRHSPPGRAPRRPLLEGGGFFEDEDTSEG 427
PGL + L + P+ PG R P L G D + G
Sbjct: 277 ETGAPGLKG--------ENGLPGENGAPGPMGPRGAPGERGR-PGLPGAAGARGNDGARG 327
Query: 428 SELSPASSLRSQRRYSTDSSSSTSCYSPESSRGAAGGPRKRRAPHGAEEGTAVPPKRPYG 487
S+ P S + P S G+ G P +R P A P P G
Sbjct: 328 SDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPG 387
Query: 488 TQRTPSTASAKTHARVLSMDGAGGDVLRPPLAGCKAELEAQVGVEQAASEPVVLPAEARR 547
+P A + G G P AG G+ A EP +
Sbjct: 388 INGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGA----PGLRGGAGEP-------GK 436
Query: 548 GPAANQPGWRGELQEEGAVG--GAAEETGR 575
A +PG RGE E G G GA E G+
Sbjct: 437 NGAKGEPGPRGERGEAGIPGVPGAKGEDGK 466
Score = 38.1 bits (87), Expect = 0.088
Identities = 45/171 (26%), Positives = 52/171 (30%), Gaps = 29/171 (16%)
Query: 1823 KGCGAGCNSGGNVDDSDCSGGGGLTSLSNNPPV----AHPTPENTAGNGDQPLPPGPGWG 1878
KG + G D+ G G L+ P + P PE G P PPG
Sbjct: 662 KGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGT 721
Query: 1879 PRSSLSG-----SGDGRPPPLLQWPPPRLPGPP----------PASPIPTEGP------- 1916
P L G G G P P P PG P PI GP
Sbjct: 722 P--GLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDK 779
Query: 1917 -RTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPKSQAP 1966
P PG+ G G+ G G G G P GG + AP
Sbjct: 780 GEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAP 830
Score = 37.0 bits (84), Expect = 0.20
Identities = 35/124 (28%), Positives = 46/124 (37%), Gaps = 21/124 (16%)
Query: 1895 LQWPPPRLPGPPPASPIPTEGPRTSRPP-GPGLLSSEGPSGKWSLGGRKGLGGSDGEPAS 1953
L P P +P + P +RPP G G +G G + GR G G G+P
Sbjct: 72 LDCPNPEIPFGECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQP-- 129
Query: 1954 GSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTPMGALGD 2013
GSP G+P P E+ P P DS +SG +G L
Sbjct: 130 GSP--GSP----------------GPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAG 171
Query: 2014 WPAP 2017
+P P
Sbjct: 172 YPGP 175
Score = 37.0 bits (84), Expect = 0.20
Identities = 36/115 (31%), Positives = 45/115 (39%), Gaps = 16/115 (13%)
Query: 1867 GDQPLPPGPGW-------GPRSSLSGSGD----GRPPPLLQWPPPRLPGPPPASPIPTEG 1915
GD+ P GPG GPR G G+P + P LPG P E
Sbjct: 741 GDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGER 800
Query: 1916 PRTSRPPGP-GLLSSEGPSGKWSLGGRKGLGGSDGE---PASGSPKGGTPKSQAP 1966
T PPGP G + G +G+ G +G G GE P P GG+ + P
Sbjct: 801 GETG-PPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPP 854
Score = 37.0 bits (84), Expect = 0.20
Identities = 67/293 (22%), Positives = 87/293 (29%), Gaps = 35/293 (11%)
Query: 326 PPGGPAPEGSDTDPPSEAELPASPDA-GVPSDDTLRSFDTVIGAGTPPGLAEPLLVVRPK 384
P G P G +T PP A P +P G P R G G PPG+A P P
Sbjct: 793 PRGSPGERG-ETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGP-----PG 846
Query: 385 DLALLRPSKRQPPLRRHSPPGRAPRRPLLEGGGFFEDEDTSEGSELSPASSLRSQRRYST 444
P Q PG P G S G+ P S
Sbjct: 847 GSGPAGPPGPQGVKGERGSPG-GPGAAGFPGARGLPGPPGSNGNPGPPGPS--------- 896
Query: 445 DSSSSTSCYSPESSRGAAGGPRKRRAPHGAEEGTAVPPKRPYGTQRTPSTASAKTHARVL 504
S P + GA G P G + P ++ G+ A +
Sbjct: 897 GSPGKDGPPGPAGNTGAPGSP----GVSGPKGDAGQPGEK--GSPGAQGPPGAPGPLGIA 950
Query: 505 SMDGAGGDVLRPPLAGCKAELEAQVGVEQAASEPVVLPAEARRGP-----------AANQ 553
+ GA G P + G + Q GV+ + +P RGP A +
Sbjct: 951 GITGARGLAGPPGMPGPRGSPGPQ-GVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGE 1009
Query: 554 PGWRGELQEEGAVGGAAEETGRRDRSSSVRRTQAIRRRHNAGSNPTPPASVMG 606
PG G +G G G+ DR + H P PA G
Sbjct: 1010 PGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSG 1062
Score = 36.6 bits (83), Expect = 0.26
Identities = 49/193 (25%), Positives = 61/193 (31%), Gaps = 30/193 (15%)
Query: 1842 GGGGLTSLSNNPPVAHPTPENTA----GNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQW 1897
G GL +P EN + G P PPGP GP G+ P
Sbjct: 1017 GSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPV-GPAGKSGDRGESGPAG---- 1071
Query: 1898 PPPRLPGPPPASPIP-TEGPRTSR-----------------PPGPGLLSSEGPSGKWSLG 1939
P PGP + P +GPR + P PG S GP+G+
Sbjct: 1072 -PAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAI 1130
Query: 1940 GRKGLGGSDGEPASGSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDS 1999
G G G G P G S P + + +E SP Q P
Sbjct: 1131 GSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPP 1190
Query: 2000 SAPESGTPMGALG 2012
AP G G +G
Sbjct: 1191 GAP--GPCCGGVG 1201
Score = 35.8 bits (81), Expect = 0.44
Identities = 69/291 (23%), Positives = 96/291 (32%), Gaps = 51/291 (17%)
Query: 326 PPGGPAPEGSDTDPPSEAELPASPDAGVPSDDTLRSFDTVIGAGTPPGLAEPLLVVRPKD 385
PPG P P G+ P S P SP P + ++ + G PPG P KD
Sbjct: 178 PPGPPGPPGTSGHPGS----PGSPGYQGPPGEPGQAGPS--GPPGPPGAIGP-SGPAGKD 230
Query: 386 LALLRPSKRQPPLRRHSP-------PGRAPRRPLLEGGGFFEDEDTSEGSELSPASSLRS 438
RP + P R P P P P ++G F+ + +G +P L+
Sbjct: 231 GESGRPGR---PGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAP--GLKG 285
Query: 439 QRRYSTDSSSSTSCYSPESSRGAAG--------GPRKRRAPHGAEEGTAVP-PKRPYGTQ 489
+ ++ + P RGA G G R GA P P P GT
Sbjct: 286 ENGLPGENGAP----GPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTA 341
Query: 490 RTPSTASAKTHARVLSMDGAGGDVLR-----------------PPLAGCKAELEAQVGVE 532
P + AK G+ G + PP + ++G
Sbjct: 342 GFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPA 401
Query: 533 QAASEPVVLPAEARRGPAA--NQPGWRGELQEEGAVGGAAEETGRRDRSSS 581
P ++ A GPA PG RG E G G E R +R +
Sbjct: 402 GIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEA 452
Score = 34.3 bits (77), Expect = 1.3
Identities = 36/136 (26%), Positives = 43/136 (31%), Gaps = 19/136 (13%)
Query: 1844 GGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPRLP 1903
G ++ PP A P N G PGP P + G+P P P
Sbjct: 82 GECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGS------PGSP 135
Query: 1904 GPPPASPIPTEGPRTSRPPGP-----------GLLSSEGPSGKWSLGGRKGLGGSDGEPA 1952
GPP GP+ P GL GP+G G G G G P
Sbjct: 136 GPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPG 195
Query: 1953 SGSPKG--GTPKSQAP 1966
S +G G P P
Sbjct: 196 SPGYQGPPGEPGQAGP 211
Score = 34.3 bits (77), Expect = 1.3
Identities = 38/129 (29%), Positives = 45/129 (34%), Gaps = 26/129 (20%)
Query: 1854 PVAHPTPENTAG-NGDQPLPPGPGWGPRSSLSGSGDGRPPPLLQWPPPR----------- 1901
P P P G NGD +P PG G + P + P
Sbjct: 107 PKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAV 166
Query: 1902 -----LPGP--PPASPIPTEGPRTSRPPG-PGLLSSEGPSGKWSLGGRKGLGGSDGEPAS 1953
PGP PP P P P TS PG PG +GP G+ G+ G G G P +
Sbjct: 167 GGLAGYPGPAGPPGPPGP---PGTSGHPGSPGSPGYQGPPGE---PGQAGPSGPPGPPGA 220
Query: 1954 GSPKGGTPK 1962
P G K
Sbjct: 221 IGPSGPAGK 229
Score = 33.9 bits (76), Expect = 1.7
Identities = 40/157 (25%), Positives = 49/157 (31%), Gaps = 26/157 (16%)
Query: 1822 HKGCGAGCNSGGNVDDSDCSGGGGLTSLSNNP-PVAHPTPENTAGNGDQPLPPGPGWGPR 1880
H+G G G GL + P P+ P G +P PG
Sbjct: 265 HRGFDGRNGEKGETGAPGLKGENGLPGENGAPGPMG---PRGAPGERGRPGLPGAAGARG 321
Query: 1881 SSLSGSGDGRPPPLLQWPPPRLPGPPPASPIPTE-------GPRTSRPPG----PGLLSS 1929
+ + DG+P P PGPP + P GP S PG PG
Sbjct: 322 NDGARGSDGQPGP---------PGPPGTAGFPGSPGAKGEVGPAGS--PGSNGAPGQRGE 370
Query: 1930 EGPSGKWSLGGRKGLGGSDGEPASGSPKGGTPKSQAP 1966
GP G G G G +G P G AP
Sbjct: 371 PGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAP 407
Score = 32.3 bits (72), Expect = 4.8
Identities = 40/142 (28%), Positives = 48/142 (33%), Gaps = 9/142 (6%)
Query: 1826 GAGCNSGGNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAG-NGDQPLPPGPGW-GPRSSL 1883
GA + G + D G S P P P AG G + L PG GPR S
Sbjct: 912 GAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSP 971
Query: 1884 SGSG----DGRPPP---LLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKW 1936
G G+P + PP G P + E R P GL +G G
Sbjct: 972 GPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGK 1031
Query: 1937 SLGGRKGLGGSDGEPASGSPKG 1958
G G G+ G P P G
Sbjct: 1032 GDRGENGSPGAPGAPGHPGPPG 1053
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 50.8 bits (120), Expect = 1e-05
Identities = 46/132 (34%), Positives = 55/132 (41%), Gaps = 9/132 (6%)
Query: 1843 GGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWG--PRSSLSGSGDGRPPPLLQW--- 1897
G G+ P V P P G G P PP PG G P L G+G PPPL +
Sbjct: 1093 GAGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIP 1152
Query: 1898 PPPRLPGP--PPASPIPTEGPRTSRPPGPGL-LSSEGPSGKWSLGGRKGLGGSDGEPASG 1954
PPP LPG PP P+P G PP PG+ + P + L G+ P
Sbjct: 1153 PPPPLPGAGIPPPPPLPGAG-IPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGAGIPPPPP 1211
Query: 1955 SPKGGTPKSQAP 1966
P G P + AP
Sbjct: 1212 LPGMGIPPAPAP 1223
Score = 48.1 bits (113), Expect = 9e-05
Identities = 57/186 (30%), Positives = 67/186 (36%), Gaps = 24/186 (12%)
Query: 1843 GGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWG--PRSSLSGSGDGRPPPLLQW--- 1897
G G+ P P P G G P PP PG G P L G+G PPPL
Sbjct: 1049 GAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIP 1108
Query: 1898 PPPRLPGP--PPASPIPTEG-PRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGEPASG 1954
PPP LPG PP P+P G P PG G + P + + L G+ P
Sbjct: 1109 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAG-IPPPPPLPRVGIPPPPPLPGAGIPPPPP 1167
Query: 1955 SPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDI---PCLDSSAPESGTPMGAL 2011
P G P PL P V PP I P L + P+ +
Sbjct: 1168 LPGAGIP-PPPPL-----------PGVGIPPPPPLPGVGIPPPPPLPGAGIPPPPPLPGM 1215
Query: 2012 GDWPAP 2017
G PAP
Sbjct: 1216 GIPPAP 1221
Score = 47.0 bits (110), Expect = 2e-04
Identities = 36/92 (39%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 1843 GGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWG--PRSSLSGSGDGRPPPLLQW--- 1897
G G+ P P P G G P PP PG G P L G+G PPPL
Sbjct: 972 GAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIP 1031
Query: 1898 PPPRLPGP--PPASPIPTEG-PRTSRPPGPGL 1926
PPP LPG PP P+P G P PG G+
Sbjct: 1032 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGI 1063
Score = 47.0 bits (110), Expect = 2e-04
Identities = 36/92 (39%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 1843 GGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWG--PRSSLSGSGDGRPPPLLQW--- 1897
G G+ P P P G G P PP PG G P L G+G PPPL
Sbjct: 994 GAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIP 1053
Query: 1898 PPPRLPGP--PPASPIPTEG-PRTSRPPGPGL 1926
PPP LPG PP P+P G P PG G+
Sbjct: 1054 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGI 1085
Score = 46.6 bits (109), Expect = 2e-04
Identities = 36/91 (39%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 1843 GGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWG--PRSSLSGSGDGRPPPLLQW--- 1897
G G+ P P P G G P PP PG G P L G+G PPPL
Sbjct: 1016 GAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIP 1075
Query: 1898 PPPRLPGP--PPASPIPTEGPRTSRPPGPGL 1926
PPP LPG PP P+P G PP PG+
Sbjct: 1076 PPPPLPGAGIPPPPPLPGAG-IPPPPPLPGV 1105
Score = 46.2 bits (108), Expect = 3e-04
Identities = 37/98 (37%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 1843 GGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWG--PRSSLSGSGDGRPPPLLQWPPP 1900
G G+ P P P G G P PP PG G P L G+G PPPL P
Sbjct: 1159 GAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIPPPPPLPGAGIPPPPPL---PGM 1215
Query: 1901 RLPGPPPASPIPTEGPRTSRPP-----GPGLLSSEGPS 1933
+P P PA P+P G PP GP LL G S
Sbjct: 1216 GIP-PAPAPPLPPPGTGIPPPPLLPVSGPPLLPQVGSS 1252
Score = 45.8 bits (107), Expect = 4e-04
Identities = 34/82 (41%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 1853 PPVAHPTPENTAGNGDQPLPPGPGWG--PRSSLSGSGDGRPPPLLQW---PPPRLPGP-- 1905
P P P G G P PP PG G P L G+G PPPL PPP LPG
Sbjct: 960 PGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGI 1019
Query: 1906 PPASPIPTEG-PRTSRPPGPGL 1926
PP P+P G P PG G+
Sbjct: 1020 PPPPPLPGAGIPPPPPLPGAGI 1041
Score = 44.7 bits (104), Expect = 0.001
Identities = 36/92 (39%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 1843 GGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWG--PRSSLSGSGDGRPPPLLQW--- 1897
G G+ P A P P G G PP PG G P L G+G PPPL
Sbjct: 939 GAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIP 998
Query: 1898 PPPRLPGP--PPASPIPTEG-PRTSRPPGPGL 1926
PPP LPG PP P+P G P PG G+
Sbjct: 999 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGI 1030
Score = 43.9 bits (102), Expect = 0.002
Identities = 33/91 (36%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Query: 1847 TSLSNNPPVAH-----PTPENTAGNGDQPLPPGPGWG--PRSSLSGSGDGRPPPLLQWPP 1899
T++ PP+ P P G G P PP PG G P L G+G PPPL P
Sbjct: 894 TAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGIPPPPPL---PG 950
Query: 1900 PRLPGPPP----ASPIPTEGPRTSRPPGPGL 1926
+P PPP P+P P PP P L
Sbjct: 951 AAIPPPPPLPGAGIPLPPPLPGAGIPPPPPL 981
Score = 43.5 bits (101), Expect = 0.002
Identities = 35/92 (38%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 1843 GGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWG--PRSSLSGSGDGRPPPLLQW--- 1897
G G+ L P P P G P PP PG G L G+G PPPL
Sbjct: 928 GAGILPLPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIP 987
Query: 1898 PPPRLPGP--PPASPIPTEG-PRTSRPPGPGL 1926
PPP LPG PP P+P G P PG G+
Sbjct: 988 PPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGI 1019
>gi|239049540 FCH domain only 1 isoform c [Homo sapiens]
Length = 839
Score = 50.4 bits (119), Expect = 2e-05
Identities = 55/170 (32%), Positives = 66/170 (38%), Gaps = 38/170 (22%)
Query: 1836 DDSDCSGGGGLTSLSNNPPVAHPTPENTAGNG-DQPLPPGPGWGPRSSLSGSGDGRPPPL 1894
D D +G L S+ P + +PEN +G D P PG P S + G + PP
Sbjct: 395 DHEDFTGSSSLGFTSSPSPFSSSSPENVEDSGLDSPSHAAPGPSPDSWVPRPGTPQSPPS 454
Query: 1895 LQWPPPRLPG----PPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGE 1950
+ PPP G P P SP P L SS GP W G + L G D
Sbjct: 455 CRAPPPEARGIRAPPLPDSPQP-------------LASSPGP---W---GLEALAGGDLM 495
Query: 1951 PASGSPKG-----------GTPKSQAPLDLS---LSLSLSLSPDVSTEAS 1986
PA P + K PL S LS SLS SP S+ AS
Sbjct: 496 PAPADPTAREGLAAPPRRLRSRKVSCPLTRSNGDLSRSLSPSPLGSSAAS 545
>gi|239049457 FCH domain only 1 isoform b [Homo sapiens]
Length = 889
Score = 50.4 bits (119), Expect = 2e-05
Identities = 55/170 (32%), Positives = 66/170 (38%), Gaps = 38/170 (22%)
Query: 1836 DDSDCSGGGGLTSLSNNPPVAHPTPENTAGNG-DQPLPPGPGWGPRSSLSGSGDGRPPPL 1894
D D +G L S+ P + +PEN +G D P PG P S + G + PP
Sbjct: 445 DHEDFTGSSSLGFTSSPSPFSSSSPENVEDSGLDSPSHAAPGPSPDSWVPRPGTPQSPPS 504
Query: 1895 LQWPPPRLPG----PPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGE 1950
+ PPP G P P SP P L SS GP W G + L G D
Sbjct: 505 CRAPPPEARGIRAPPLPDSPQP-------------LASSPGP---W---GLEALAGGDLM 545
Query: 1951 PASGSPKG-----------GTPKSQAPLDLS---LSLSLSLSPDVSTEAS 1986
PA P + K PL S LS SLS SP S+ AS
Sbjct: 546 PAPADPTAREGLAAPPRRLRSRKVSCPLTRSNGDLSRSLSPSPLGSSAAS 595
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,968,053
Number of Sequences: 37866
Number of extensions: 5278563
Number of successful extensions: 43146
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 1332
Number of HSP's that attempted gapping in prelim test: 25211
Number of HSP's gapped (non-prelim): 12237
length of query: 2034
length of database: 18,247,518
effective HSP length: 118
effective length of query: 1916
effective length of database: 13,779,330
effective search space: 26401196280
effective search space used: 26401196280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 70 (31.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.