Guide to the Human Genome
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Name: C14orf135 Sequence: fasta or formatted (938aa) NCBI GI: 145580590
Description:

hepatitis C virus F protein-binding protein 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         47           2
 C cysteine            1.7         16           1
 D aspartate           4.2         39           2
 E glutamate           6.1         57           2
 F phenylalanine       5.0         47           2
 G glycine             5.5         52           2
 H histidine           2.6         24           2
 I isoleucine          6.7         63           3
 K lysine              4.9         46           2
 L leucine            14.3        134           3
 M methionine          2.9         27           1
 N asparagine          3.1         29           1
 P proline             5.4         51           3
 Q glutamine           3.3         31           1
 R arginine            3.6         34           2
 S serine              7.7         72           2
 T threonine           5.4         51           2
 V valine              6.8         64           2
 W tryptophan          2.1         20           2
 Y tyrosine            3.6         34           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hepatitis C virus F protein-binding protein 2 [Homo... 
PCNXL2                0.027   pecanex-like 2 
PCNX                  0.025   pecanex-like 1 
PCNXL3                0.022   pecanex-like 3 
ATN1                  0.005   atrophin-1 
ATN1                  0.005   atrophin-1 
NPY5R                 0.005   neuropeptide Y receptor Y5 
FAT1                  0.004   FAT tumor suppressor 1 precursor 
UBR1                  0.004   ubiquitin protein ligase E3 component n-recognin 1 [...
INADL                 0.004   InaD-like 
MRPL40                0.004   mitochondrial ribosomal protein L40 
EPHA1                 0.003   ephrin receptor EphA1 
LOC728661             0.003   similar to solute carrier family 35, member E2 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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