Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 157502216
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157502216 CSAG family, member 2 isoform 1 [Homo sapiens]
(127 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157502216 CSAG family, member 2 isoform 1 [Homo sapiens] 273 3e-74
gi|193788718 CSAG family, member 3 isoform a [Homo sapiens] 273 3e-74
gi|157738682 CSAG family, member 2 isoform 2 [Homo sapiens] 226 4e-60
gi|193788726 CSAG family, member 3 isoform b [Homo sapiens] 226 4e-60
gi|169216494 PREDICTED: similar to CSAG family, member 2 [Homo s... 219 6e-58
gi|169216728 PREDICTED: similar to CSAG family, member 2 [Homo s... 219 6e-58
gi|239757940 PREDICTED: similar to CSAG family, member 2 [Homo s... 216 3e-57
gi|24234760 chondrosarcoma associated gene 1 [Homo sapiens] 129 5e-31
gi|156547151 chondrosarcoma associated gene 1 [Homo sapiens] 129 5e-31
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 34 0.035
gi|7019535 B-cell linker isoform 1 [Homo sapiens] 32 0.17
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 32 0.17
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 31 0.22
gi|7657693 zinc finger protein 324 [Homo sapiens] 31 0.29
gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens] 30 0.38
gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens] 30 0.38
gi|183979973 claudin 19 isoform a [Homo sapiens] 30 0.38
gi|47578107 delangin isoform B [Homo sapiens] 30 0.38
gi|47578105 delangin isoform A [Homo sapiens] 30 0.38
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 30 0.50
gi|38348332 killer cell lectin-like receptor subfamily G, member... 30 0.50
gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens] 30 0.65
gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens] 30 0.65
gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens] 30 0.65
gi|13994335 Mix-like homeobox protein 1 [Homo sapiens] 30 0.65
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 29 0.85
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 29 0.85
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 29 0.85
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 29 0.85
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 29 0.85
>gi|157502216 CSAG family, member 2 isoform 1 [Homo sapiens]
Length = 127
Score = 273 bits (697), Expect = 3e-74
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
Query: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV 120
RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV
Sbjct: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV 120
Query: 121 PGTKGSP 127
PGTKGSP
Sbjct: 121 PGTKGSP 127
>gi|193788718 CSAG family, member 3 isoform a [Homo sapiens]
Length = 127
Score = 273 bits (697), Expect = 3e-74
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
Query: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV 120
RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV
Sbjct: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV 120
Query: 121 PGTKGSP 127
PGTKGSP
Sbjct: 121 PGTKGSP 127
>gi|157738682 CSAG family, member 2 isoform 2 [Homo sapiens]
Length = 110
Score = 226 bits (576), Expect = 4e-60
Identities = 110/127 (86%), Positives = 110/127 (86%), Gaps = 17/127 (13%)
Query: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
Query: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV 120
RDAGLVKMSRKPRASSPLSNNHPPTPKR FPRQPGREKGPIKEV
Sbjct: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKR-----------------FPRQPGREKGPIKEV 103
Query: 121 PGTKGSP 127
PGTKGSP
Sbjct: 104 PGTKGSP 110
>gi|193788726 CSAG family, member 3 isoform b [Homo sapiens]
Length = 110
Score = 226 bits (576), Expect = 4e-60
Identities = 110/127 (86%), Positives = 110/127 (86%), Gaps = 17/127 (13%)
Query: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
Query: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV 120
RDAGLVKMSRKPRASSPLSNNHPPTPKR FPRQPGREKGPIKEV
Sbjct: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKR-----------------FPRQPGREKGPIKEV 103
Query: 121 PGTKGSP 127
PGTKGSP
Sbjct: 104 PGTKGSP 110
>gi|169216494 PREDICTED: similar to CSAG family, member 2 [Homo
sapiens]
Length = 110
Score = 219 bits (557), Expect = 6e-58
Identities = 105/127 (82%), Positives = 108/127 (85%), Gaps = 17/127 (13%)
Query: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
MW+GLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1 MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
Query: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV 120
RD GLVKMSRKPRASSPLSNNHPPTPKR PRQPGRE+GP+KEV
Sbjct: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKR-----------------LPRQPGREQGPVKEV 103
Query: 121 PGTKGSP 127
PGTKGSP
Sbjct: 104 PGTKGSP 110
>gi|169216728 PREDICTED: similar to CSAG family, member 2 [Homo
sapiens]
Length = 110
Score = 219 bits (557), Expect = 6e-58
Identities = 105/127 (82%), Positives = 108/127 (85%), Gaps = 17/127 (13%)
Query: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
MW+GLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1 MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
Query: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV 120
RD GLVKMSRKPRASSPLSNNHPPTPKR PRQPGRE+GP+KEV
Sbjct: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKR-----------------LPRQPGREQGPVKEV 103
Query: 121 PGTKGSP 127
PGTKGSP
Sbjct: 104 PGTKGSP 110
>gi|239757940 PREDICTED: similar to CSAG family, member 2 [Homo
sapiens]
Length = 110
Score = 216 bits (551), Expect = 3e-57
Identities = 104/127 (81%), Positives = 107/127 (84%), Gaps = 17/127 (13%)
Query: 1 MWMGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
MW+GLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL
Sbjct: 1 MWIGLIQLVEGVKRKDQGFLEKEFYHKTNIKMRCEFLACWPAFTVLGEAWRDQVDWSRLL 60
Query: 61 RDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV 120
RD GLVKMSRKPRASSPLSNNHPPTPKR PRQPG E+GP+KEV
Sbjct: 61 RDTGLVKMSRKPRASSPLSNNHPPTPKR-----------------LPRQPGXEQGPVKEV 103
Query: 121 PGTKGSP 127
PGTKGSP
Sbjct: 104 PGTKGSP 110
>gi|24234760 chondrosarcoma associated gene 1 [Homo sapiens]
Length = 78
Score = 129 bits (325), Expect = 5e-31
Identities = 65/90 (72%), Positives = 66/90 (73%), Gaps = 17/90 (18%)
Query: 38 ACWPAFTVLGEAWRDQVDWSRLLRDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLN 97
ACWPAFTVLGEA DQVDWSRL RD GLVKMSRKPRASSP SNNHP TPKR
Sbjct: 6 ACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKR--------- 56
Query: 98 PGPEALSKFPRQPGREKGPIKEVPGTKGSP 127
FPRQP REKGP+KEVPGTKGSP
Sbjct: 57 --------FPRQPKREKGPVKEVPGTKGSP 78
>gi|156547151 chondrosarcoma associated gene 1 [Homo sapiens]
Length = 78
Score = 129 bits (325), Expect = 5e-31
Identities = 65/90 (72%), Positives = 66/90 (73%), Gaps = 17/90 (18%)
Query: 38 ACWPAFTVLGEAWRDQVDWSRLLRDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLN 97
ACWPAFTVLGEA DQVDWSRL RD GLVKMSRKPRASSP SNNHP TPKR
Sbjct: 6 ACWPAFTVLGEARGDQVDWSRLYRDTGLVKMSRKPRASSPFSNNHPSTPKR--------- 56
Query: 98 PGPEALSKFPRQPGREKGPIKEVPGTKGSP 127
FPRQP REKGP+KEVPGTKGSP
Sbjct: 57 --------FPRQPKREKGPVKEVPGTKGSP 78
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 33.9 bits (76), Expect = 0.035
Identities = 32/91 (35%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 45 VLGEAWRDQVDWSRLLRD----AGLVKMSR----KPRASSPLSNNHPPTPKRRGSGRHPL 96
+LG WRD V R L D AG V S + S P PK R GR P
Sbjct: 912 LLGLQWRDCV--RRQLGDFDTEAGAVSSSEPTVARDEPESLALAQKSPAPKVRKPGRKPP 969
Query: 97 NPGPEALSKFPRQPGREKGPIKEVPGTKGSP 127
PGPE K G E P T SP
Sbjct: 970 TPGPE---KAEAAAGEESCGASPTPATSASP 997
>gi|7019535 B-cell linker isoform 1 [Homo sapiens]
Length = 456
Score = 31.6 bits (70), Expect = 0.17
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 63 AGLVKMSRKPRASSPLSNNHPPTPKRRGSGR-HPLNPGPEALSKFPRQPGREKGPIKEVP 121
A +V S KP +S+P S P T R SG +P P A S PR + P+K P
Sbjct: 203 APMVNRSTKPNSSTPASP--PGTASGRNSGAWETKSPPPAAPSPLPRAGKKPTTPLKTTP 260
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 31.6 bits (70), Expect = 0.17
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 83 PPTPKRRGSGRH---PLNPGPEALSKFPRQPGREKGPIKE-VPGTKGSP 127
P TP +GS P +PG + L+ P QPG + GP + PG +G P
Sbjct: 312 PGTPGMKGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQGLP 360
Score = 26.2 bits (56), Expect = 7.2
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 86 PKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEVPGTKGSP 127
P G G HP PGP + P +PG+ I G +GSP
Sbjct: 606 PGEVGRG-HPGMPGPPGIPGLPGRPGQ---AINGKDGDRGSP 643
Score = 25.8 bits (55), Expect = 9.4
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 73 RASSPLSNNH------PPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGP 116
+A P S H P P +G PGP+ L F PG+E P
Sbjct: 323 QAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQGLPGFSGPPGKEGEP 372
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 31.2 bits (69), Expect = 0.22
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 89 RGSGRHPLNPGPEALSKFPRQPGR--EKGPIKEVPGTKGSP 127
RGS P PGP + FP PG E GP PG+ G+P
Sbjct: 326 RGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGS-PGSNGAP 365
Score = 30.0 bits (66), Expect = 0.50
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 77 PLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEV--PGTKGSP 127
P SN +P P GS PGP + P PG GP + PG KGSP
Sbjct: 884 PGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPG-VSGPKGDAGQPGEKGSP 935
>gi|7657693 zinc finger protein 324 [Homo sapiens]
Length = 553
Score = 30.8 bits (68), Expect = 0.29
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 56 WSRLLRDAGLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKG 115
W RLL +G + S R +SPL + + H L L + PR P R+K
Sbjct: 144 WERLLLGSGSGQASVSLRLTSPLRPPEGVRLREKTLTEHAL------LGRQPRTPERQKP 197
Query: 116 PIKEVPG 122
+EVPG
Sbjct: 198 CAQEVPG 204
>gi|54112101 ectodysplasin A isoform EDA-A2 [Homo sapiens]
Length = 389
Score = 30.4 bits (67), Expect = 0.38
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 64 GLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEVPGT 123
G VK +K + + P N PP P P PGP+ P PG + PG
Sbjct: 168 GPVKNKKKGKKAGPPGPNGPPGP--------PGPPGPQGPPGIPGIPGIPGTTVMGPPGP 219
Query: 124 KGSP 127
G P
Sbjct: 220 PGPP 223
>gi|4503449 ectodysplasin A isoform EDA-A1 [Homo sapiens]
Length = 391
Score = 30.4 bits (67), Expect = 0.38
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 64 GLVKMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEVPGT 123
G VK +K + + P N PP P P PGP+ P PG + PG
Sbjct: 168 GPVKNKKKGKKAGPPGPNGPPGP--------PGPPGPQGPPGIPGIPGIPGTTVMGPPGP 219
Query: 124 KGSP 127
G P
Sbjct: 220 PGPP 223
>gi|183979973 claudin 19 isoform a [Homo sapiens]
Length = 224
Score = 30.4 bits (67), Expect = 0.38
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 84 PTPKRRGSGRHPLNPGPEALSKFP--RQPGREKGPI 117
P P+R S P PGP A ++ P + P KGP+
Sbjct: 187 PEPERPNSSPQPYRPGPSAAAREPVVKLPASAKGPL 222
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 30.4 bits (67), Expect = 0.38
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 67 KMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEVP 121
K +P S+ HP TPK++G GR P P + S+ P P ++ E P
Sbjct: 706 KGESRPETPKQKSDGHPETPKQKGDGR-PETPKQKGESR-PETPKQKNEGRPETP 758
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 30.4 bits (67), Expect = 0.38
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 67 KMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEVP 121
K +P S+ HP TPK++G GR P P + S+ P P ++ E P
Sbjct: 706 KGESRPETPKQKSDGHPETPKQKGDGR-PETPKQKGESR-PETPKQKNEGRPETP 758
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 30.0 bits (66), Expect = 0.50
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 67 KMSRKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEVPGTKGS 126
K ++KP+ P + PP SG+ P P ++P P GP +E+P G+
Sbjct: 148 KATKKPKEKPPKATKKPP------SGKRPPILAPSETLEWPLPPPPSPGP-EELPQEGGA 200
Query: 127 P 127
P
Sbjct: 201 P 201
>gi|38348332 killer cell lectin-like receptor subfamily G, member 2
[Homo sapiens]
Length = 409
Score = 30.0 bits (66), Expect = 0.50
Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 63 AGLVKMSRK-PRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQ---PGREKGPIK 118
AGL S+K P + P S PP G P +PGP AL K PR PG E P
Sbjct: 60 AGLEPSSKKKPPSPRPGSPRVPPLSLGYGVCPEPPSPGP-ALVKLPRNGEAPGAEPAPSA 118
Query: 119 EVP 121
P
Sbjct: 119 WAP 121
>gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens]
Length = 1137
Score = 29.6 bits (65), Expect = 0.65
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 29/86 (33%)
Query: 71 KPRASSPLSN-------NHPPTPKRRGSGRHPLNPGP--------EALSKFPRQP----- 110
+P A SP N +H P ++R SG P+N GP + L+ P QP
Sbjct: 697 QPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQST 756
Query: 111 ---------GREKGPIKEVPGTKGSP 127
+++ P K VP SP
Sbjct: 757 SQLQVQALTQQQQSPTKAVPALGKSP 782
>gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens]
Length = 1049
Score = 29.6 bits (65), Expect = 0.65
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 29/86 (33%)
Query: 71 KPRASSPLSN-------NHPPTPKRRGSGRHPLNPGP--------EALSKFPRQP----- 110
+P A SP N +H P ++R SG P+N GP + L+ P QP
Sbjct: 609 QPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQST 668
Query: 111 ---------GREKGPIKEVPGTKGSP 127
+++ P K VP SP
Sbjct: 669 SQLQVQALTQQQQSPTKAVPALGKSP 694
>gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens]
Length = 1091
Score = 29.6 bits (65), Expect = 0.65
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 29/86 (33%)
Query: 71 KPRASSPLSN-------NHPPTPKRRGSGRHPLNPGP--------EALSKFPRQP----- 110
+P A SP N +H P ++R SG P+N GP + L+ P QP
Sbjct: 651 QPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQST 710
Query: 111 ---------GREKGPIKEVPGTKGSP 127
+++ P K VP SP
Sbjct: 711 SQLQVQALTQQQQSPTKAVPALGKSP 736
>gi|13994335 Mix-like homeobox protein 1 [Homo sapiens]
Length = 232
Score = 29.6 bits (65), Expect = 0.65
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 70 RKPRASSPLSNNHPPTPKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEVPGTKGSP 127
R P A L PP+P P PGP + F GR+ GP P + GSP
Sbjct: 21 RAPHAGGALLP--PPSPAAALLPAPPAGPGPATFAGFL---GRDPGPAPPPPASLGSP 73
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 29.3 bits (64), Expect = 0.85
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 89 RGSGRHPLNPGPEALSKFPRQPGREKGPIKEVPGTKGSP 127
RG P PGP + P +PGR +VPG G P
Sbjct: 899 RGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLP 937
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 29.3 bits (64), Expect = 0.85
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 89 RGSGRHPLNPGPEALSKFPRQPGREKGPIKEVPGTKGSP 127
RG P PGP + P +PGR +VPG G P
Sbjct: 484 RGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLP 522
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 29.3 bits (64), Expect = 0.85
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 89 RGSGRHPLNPGPEALSKFPRQPGREKGPIKEVPGTKGSP 127
RG P PGP + P +PGR +VPG G P
Sbjct: 664 RGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLP 702
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 29.3 bits (64), Expect = 0.85
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 86 PKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEVPGTKGSP 127
P R+G P +PGP P +PG +GP + VPG +G P
Sbjct: 548 PGRKGEKGEPADPGP------PGEPG-PRGP-RGVPGPEGEP 581
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 29.3 bits (64), Expect = 0.85
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 86 PKRRGSGRHPLNPGPEALSKFPRQPGREKGPIKEVPGTKGSP 127
P R+G P +PGP P +PG +GP + VPG +G P
Sbjct: 548 PGRKGEKGEPADPGP------PGEPG-PRGP-RGVPGPEGEP 581
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,514,083
Number of Sequences: 37866
Number of extensions: 362890
Number of successful extensions: 1954
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 1738
Number of HSP's gapped (non-prelim): 352
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.