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Search of human proteins with 157502173
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157502173 hypothetical protein LOC348487 [Homo sapiens]
(280 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157502173 hypothetical protein LOC348487 [Homo sapiens] 593 e-170
gi|164519061 hypothetical protein LOC9715 isoform b [Homo sapiens] 118 5e-27
gi|164565452 hypothetical protein LOC9715 isoform a [Homo sapiens] 118 5e-27
gi|40255251 hypothetical protein LOC131408 [Homo sapiens] 104 1e-22
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 43 4e-04
gi|157168329 formin 1 [Homo sapiens] 41 0.001
gi|5730045 solute carrier family 16, member 2 [Homo sapiens] 41 0.001
gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 40 0.002
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 40 0.002
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 40 0.002
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 40 0.002
gi|238859557 regulatory factor X1 [Homo sapiens] 39 0.005
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 39 0.005
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens] 39 0.005
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 39 0.005
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 39 0.007
gi|40807465 zinc finger protein 341 [Homo sapiens] 38 0.009
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 38 0.011
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca... 38 0.011
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 38 0.011
gi|89941479 hypothetical protein LOC148137 [Homo sapiens] 38 0.011
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 37 0.015
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 37 0.015
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 37 0.015
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 37 0.019
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens] 37 0.019
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 37 0.019
gi|33356148 formin-like 1 [Homo sapiens] 37 0.019
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 37 0.025
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 37 0.025
>gi|157502173 hypothetical protein LOC348487 [Homo sapiens]
Length = 280
Score = 593 bits (1528), Expect = e-170
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 1 MGSCVSRDLFTSAHKNCPMPQGADPLNPDLPSGRTPTVAPDCVIGKDKQMDFCWDPWQRC 60
MGSCVSRDLFTSAHKNCPMPQGADPLNPDLPSGRTPTVAPDCVIGKDKQMDFCWDPWQRC
Sbjct: 1 MGSCVSRDLFTSAHKNCPMPQGADPLNPDLPSGRTPTVAPDCVIGKDKQMDFCWDPWQRC 60
Query: 61 FQTTNGYLSDSRSRPGNYNVAALATSSLVGVVQSIKDHITKPTAMARGRVAHLIEWKGWS 120
FQTTNGYLSDSRSRPGNYNVAALATSSLVGVVQSIKDHITKPTAMARGRVAHLIEWKGWS
Sbjct: 61 FQTTNGYLSDSRSRPGNYNVAALATSSLVGVVQSIKDHITKPTAMARGRVAHLIEWKGWS 120
Query: 121 AQPAGWELSPAEDEHYCCLPDELREARFAAGVAEQFAITEATLSAWSSLDEEELHPENSP 180
AQPAGWELSPAEDEHYCCLPDELREARFAAGVAEQFAITEATLSAWSSLDEEELHPENSP
Sbjct: 121 AQPAGWELSPAEDEHYCCLPDELREARFAAGVAEQFAITEATLSAWSSLDEEELHPENSP 180
Query: 181 QGIVQLQDLESIYLQDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPE 240
QGIVQLQDLESIYLQDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPE
Sbjct: 181 QGIVQLQDLESIYLQDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPE 240
Query: 241 LQHRRRLPGAQGPEGGTHPPGSLPSMDSGSLWEEDEVFYN 280
LQHRRRLPGAQGPEGGTHPPGSLPSMDSGSLWEEDEVFYN
Sbjct: 241 LQHRRRLPGAQGPEGGTHPPGSLPSMDSGSLWEEDEVFYN 280
>gi|164519061 hypothetical protein LOC9715 isoform b [Homo sapiens]
Length = 332
Score = 118 bits (296), Expect = 5e-27
Identities = 67/160 (41%), Positives = 89/160 (55%), Gaps = 8/160 (5%)
Query: 51 DFCWDPWQRCFQTTNGYLSDSRSRPGNYNVAALATSSLVGVVQSIKDHITKPTAMARGRV 110
DF WD + T L + Y + ALA SS G+ +S+KDH+TKPTAM +GRV
Sbjct: 23 DFSWDGINLSMEDTTSILPKLKRNSNAYGIGALAKSSFSGISRSMKDHVTKPTAMGQGRV 82
Query: 111 AHLIEWKGWSAQPA-----GWELSPAEDEHYCCLPDELREARFAAGVAEQFAITEATLSA 165
AH+IEW+GW PA E + + Y L D +EARF AGV EQFAI+EATL A
Sbjct: 83 AHMIEWQGWGKTPAVQPQHSHESVRRDTDAYSDLSDGEKEARFLAGVMEQFAISEATLMA 142
Query: 166 WSSLDEEEL--HPENSPQGIVQLQDLESIY-LQDSLPSGP 202
WSS+D E++ + P G + + + QD+L P
Sbjct: 143 WSSMDGEDMSVNSTQEPLGCNYSDNYQELMDSQDALAQAP 182
>gi|164565452 hypothetical protein LOC9715 isoform a [Homo sapiens]
Length = 360
Score = 118 bits (296), Expect = 5e-27
Identities = 67/160 (41%), Positives = 89/160 (55%), Gaps = 8/160 (5%)
Query: 51 DFCWDPWQRCFQTTNGYLSDSRSRPGNYNVAALATSSLVGVVQSIKDHITKPTAMARGRV 110
DF WD + T L + Y + ALA SS G+ +S+KDH+TKPTAM +GRV
Sbjct: 51 DFSWDGINLSMEDTTSILPKLKRNSNAYGIGALAKSSFSGISRSMKDHVTKPTAMGQGRV 110
Query: 111 AHLIEWKGWSAQPA-----GWELSPAEDEHYCCLPDELREARFAAGVAEQFAITEATLSA 165
AH+IEW+GW PA E + + Y L D +EARF AGV EQFAI+EATL A
Sbjct: 111 AHMIEWQGWGKTPAVQPQHSHESVRRDTDAYSDLSDGEKEARFLAGVMEQFAISEATLMA 170
Query: 166 WSSLDEEEL--HPENSPQGIVQLQDLESIY-LQDSLPSGP 202
WSS+D E++ + P G + + + QD+L P
Sbjct: 171 WSSMDGEDMSVNSTQEPLGCNYSDNYQELMDSQDALAQAP 210
>gi|40255251 hypothetical protein LOC131408 [Homo sapiens]
Length = 335
Score = 104 bits (259), Expect = 1e-22
Identities = 65/147 (44%), Positives = 80/147 (54%), Gaps = 9/147 (6%)
Query: 90 GVVQSIKDHITKPTAMARGRVAHLIEWKGWSAQPAGWELSPAEDEHYCCLPDELREARFA 149
G+ Q +KDH+TKPTAMA+GRVAHLIEWKGWS + Y L + +EARFA
Sbjct: 78 GISQVVKDHVTKPTAMAQGRVAHLIEWKGWSKPSDSPAALESAFSSYSDLSEGEQEARFA 137
Query: 150 AGVAEQFAITEATLSAWSSLDEEELHPENSPQGIVQLQDLESIYLQDSLPSGPSQDDSL- 208
AGVAEQFAI EA L AWSS+D E+ ++ + D + + LP GP D
Sbjct: 138 AGVAEQFAIAEAKLRAWSSVDGEDSTDDSYDEDFAGGMDTD---MAGQLPLGPHLQDLFT 194
Query: 209 -QAFSSP----SPSPDSCPSPEEPPST 230
FS P S P+S S P T
Sbjct: 195 GHRFSRPVRQGSVEPESDCSQTVSPDT 221
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 42.7 bits (99), Expect = 4e-04
Identities = 32/87 (36%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 196 DSLPSGPS----QDDSLQAFSSPS-------PSPDSCPSPEEPPSTAGIP-QPPSPELQH 243
+S P+GP Q DS S + P P P P PP T+G P P SP Q
Sbjct: 142 ESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQG 201
Query: 244 RRRLPGAQGPEGGTHPPGSL-PSMDSG 269
PG GP G PPG++ PS +G
Sbjct: 202 PPGEPGQAGPSGPPGPPGAIGPSGPAG 228
Score = 32.0 bits (71), Expect = 0.62
Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 13/56 (23%)
Query: 219 DSCPSPEEPPSTAGIP-------------QPPSPELQHRRRLPGAQGPEGGTHPPG 261
D P P PP TAG P P S +R PG QG G PPG
Sbjct: 329 DGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPG 384
Score = 31.2 bits (69), Expect = 1.1
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 221 CPSPEEP--PSTAGIPQPPSPELQHRRRLPGAQGPEGGTHPPG 261
CP+PE P A PQPP+ + G QGP+G PPG
Sbjct: 74 CPNPEIPFGECCAVCPQPPTAPTRPPNG-QGPQGPKGDPGPPG 115
Score = 30.8 bits (68), Expect = 1.4
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 214 PSPSPDSCPSPEEPPSTAGIPQPPS-PELQHRRRLPGAQGPEGGTHPPGSLPSMDSG 269
P +P P+ + P G P PP P +PG G G PPG S +G
Sbjct: 91 PPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTG 147
Score = 30.8 bits (68), Expect = 1.4
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 195 QDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPE-LQHRRRLPGAQGP 253
+D +P GP S P D P P +G P PP P + + + G GP
Sbjct: 526 RDGVPGGPGMRG--MPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGP 583
Query: 254 EGGTHPPG 261
+G PG
Sbjct: 584 KGNDGAPG 591
Score = 30.4 bits (67), Expect = 1.8
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 196 DSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPP-------SPELQHRRRLP 248
D+ P GP L P P + P P AG P P +P + L
Sbjct: 631 DTGPPGPQGLQGLPGTGGP-PGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLA 689
Query: 249 GAQGPEGGTHPPG 261
GA G GG PPG
Sbjct: 690 GAPGLRGGAGPPG 702
Score = 30.0 bits (66), Expect = 2.4
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 180 PQGIVQLQDLESIYLQDSLPSGPSQDDSLQAFSSPSPSPDS-CPSPEEPPSTAGIPQPPS 238
PQG+ L ++ P P A +P D+ P PP AG +
Sbjct: 637 PQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAG-----A 691
Query: 239 PELQHRRRLPGAQGPEGGTHPPG 261
P L+ PG +G +G PPG
Sbjct: 692 PGLRGGAGPPGPEGGKGAAGPPG 714
Score = 29.6 bits (65), Expect = 3.1
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 199 PSGPSQDDSLQAFSSPSPSPDSCPSPEE-----PPSTAGIPQPPSPELQHRRRLPGAQGP 253
P+GP ++ P + P PP + G P PP P + G GP
Sbjct: 850 PAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGK--DGPPGP 907
Query: 254 EGGTHPPGS 262
G T PGS
Sbjct: 908 AGNTGAPGS 916
Score = 29.3 bits (64), Expect = 4.0
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 201 GPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQ----PPSPELQHRRRLPGAQGPEGG 256
GP+ + + P+ P P P AG P P P ++ PG G +G
Sbjct: 492 GPAGPNGIPGEKGPA-GERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGK 550
Query: 257 THPPGS 262
PPGS
Sbjct: 551 PGPPGS 556
Score = 29.3 bits (64), Expect = 4.0
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 216 PSPDSCPSPEEPPSTAG-IPQPPSPELQH---------RRRLPGAQGPEGGTHPPG 261
P P P + PP AG P SP + + PGAQGP G P G
Sbjct: 893 PGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLG 948
Score = 28.1 bits (61), Expect = 8.9
Identities = 18/66 (27%), Positives = 22/66 (33%)
Query: 196 DSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEG 255
D +GP LQ P P EP P +P + PG +GP G
Sbjct: 628 DKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPG 687
Query: 256 GTHPPG 261
PG
Sbjct: 688 LAGAPG 693
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 40.8 bits (94), Expect = 0.001
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 214 PSPSPDSCPSPEEPPSTAG-IPQPPSPELQHRRRLPGAQGPEGGTHPPGSLPSMDSG 269
P P P P P PPS+AG P PP P L + P GP PPG P G
Sbjct: 679 PLPPPPPPPPPLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPPAPPPPGLAPPPPPG 735
Score = 34.3 bits (77), Expect = 0.12
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 173 ELHPENSPQGI-VQLQDLESIYL--QDSLPSGPSQDDSLQAFSSPSPSPDSC----PSPE 225
+L P N + I LQ +E + Q +LP P+ + P P P P+P
Sbjct: 617 QLSPPNDHKDIHAALQPMEGMASNQQKALPPPPA------SIPPPPPLPSGLGSLSPAPP 670
Query: 226 EPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHPP 260
PP +AG P PP P P + GP PP
Sbjct: 671 MPPVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPP 705
Score = 28.5 bits (62), Expect = 6.8
Identities = 21/72 (29%), Positives = 24/72 (33%), Gaps = 12/72 (16%)
Query: 199 PSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTH 258
P P A P P P P+ PP+ G P P P PG P
Sbjct: 685 PPPPPLPPPSSAGPPPPPPPPPLPNSPAPPNPGGPPPAPPP--------PGLAPPP---- 732
Query: 259 PPGSLPSMDSGS 270
PPG + S S
Sbjct: 733 PPGLFFGLGSSS 744
>gi|5730045 solute carrier family 16, member 2 [Homo sapiens]
Length = 613
Score = 40.8 bits (94), Expect = 0.001
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 150 AGVAEQFAITEATLSAWSSLDEEELHPENSPQGIVQLQDLESIYLQDSLPSGPSQDDSLQ 209
A +A Q +E W D+E+ P SP+ + E + +P P +
Sbjct: 73 AAMALQSQASEEAKGPWQEADQEQQEPVGSPE---PESEPEPEPEPEPVPVPPPEPQ--- 126
Query: 210 AFSSPSPSPDSCPSPEEPPSTAGIPQP-PSPELQHRRRLPGAQGPEGG 256
P P PD P PE + + +P P+P ++ R G Q PEGG
Sbjct: 127 --PEPQPLPDPAPLPELEFESERVHEPEPTPTVETRGTARGFQPPEGG 172
>gi|239508790 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 490
Score = 40.4 bits (93), Expect = 0.002
Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 194 LQDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPS--PELQHRRRLPGAQ 251
L +PS PS L PSP D P + PS +G+P PPS P L L G
Sbjct: 207 LLSDVPSPPSDVPLLS--DVPSPPSDVPSLPSDVPSLSGVPSPPSDVPSL-----LSGVP 259
Query: 252 GPEGGTHPPGSLPSM 266
P PP +PS+
Sbjct: 260 SPPSDISPPSDVPSL 274
Score = 32.3 bits (72), Expect = 0.47
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 194 LQDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPS 238
L +PS PS SL + PSP D P + P +G+P PPS
Sbjct: 288 LLSGVPSPPSDVPSLLS-DVPSPPSDVPSPPSDIPLLSGVPSPPS 331
Score = 28.9 bits (63), Expect = 5.2
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 130 PAEDEHYCCL-PDELREARFAAGVAEQFAITEATLSAWSSLDEEELHPENSPQGIVQLQD 188
P HY + P + +GV + + LS SL + P + + L D
Sbjct: 91 PLVSPHYSLVSPHRPLVSPLLSGVPSPPSDVPSLLSGVPSLPSDVSSPPSDVPSL--LSD 148
Query: 189 LESIYLQDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPST-AGIPQPPS 238
+ S L +PS PS PSP D P + PS +G+P PPS
Sbjct: 149 VPS--LLSGVPSPPSD--------VPSPPSDVPSPPSDVPSLLSGVPSPPS 189
Score = 28.1 bits (61), Expect = 8.9
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 16/88 (18%)
Query: 198 LPSGPSQDDSLQA------FSSPSPSPDSCPSPEEPPSTAGIPQPPS--PELQHRRRLPG 249
+PS PS SL + PSP D P + P + +P PPS P L P
Sbjct: 170 VPSPPSDVPSLLSGVPSPPSDVPSPPSDVPSPPSDVPLLSDVPSPPSDVPLLSDVPSPPS 229
Query: 250 --------AQGPEGGTHPPGSLPSMDSG 269
G PP +PS+ SG
Sbjct: 230 DVPSLPSDVPSLSGVPSPPSDVPSLLSG 257
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 40.4 bits (93), Expect = 0.002
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 195 QDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQ-HRRRLPGAQGP 253
Q LP P + S S S P PE P AG P P P+ + G+ GP
Sbjct: 1114 QPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGP 1173
Query: 254 EGGTHPPGSLPSMDSGSL 271
+G PGS+ S D G+L
Sbjct: 1174 KGEKGEPGSIFSPDGGAL 1191
Score = 38.1 bits (87), Expect = 0.009
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 198 LPSGPSQDDSLQAFSSPSPSP---DSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPE 254
+P P + SS P P P E PP G+P PP P PG +GP
Sbjct: 913 VPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGP--------PGREGPP 964
Query: 255 GGTHPPGSL 263
G T GSL
Sbjct: 965 GRTGQKGSL 973
Score = 38.1 bits (87), Expect = 0.009
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 201 GPSQDDSLQAFSSPSPSPDSCPS-----PEEPPSTAGIPQPPSPELQHRRRL--PGAQGP 253
GP + +S++ P P P P + PP G P PPS HR+ + PG GP
Sbjct: 1369 GP-KGESIRGQPGP-PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGP 1426
Query: 254 EGGTHPPGSLPSMDSGSLW 272
G PPG++ + LW
Sbjct: 1427 PGPPGPPGTMGASSGVRLW 1445
Score = 35.8 bits (81), Expect = 0.043
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 220 SCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHPPG 261
S P P PP G P P P+ + R PG GP+G PPG
Sbjct: 1351 SLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQG---PPG 1389
Score = 31.6 bits (70), Expect = 0.81
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 201 GPSQDDSLQAFSSPSPSPDSCPSPEEPPST--------AGIPQPPSPELQHRRRLPGAQG 252
G D SL P P P P PP T A +P P L + PG +G
Sbjct: 1239 GEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKG 1298
Query: 253 PEGGTHPPG 261
+G PPG
Sbjct: 1299 AKGEVGPPG 1307
Score = 30.8 bits (68), Expect = 1.4
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 176 PENSPQGIVQLQDLESIYLQDSLPSGP-SQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIP 234
P ++PQ ++ +++ +PS P + +P+PSP S P P + +P
Sbjct: 157 PSSTPQ-----ENGTTLWPSRGIPSSPGAHTTEAGTLPAPTPSPPSLGRPWAPLTGPSVP 211
Query: 235 QPPSPELQHRRRLPGAQGPEGGTHPPGSLPSMDSGSL 271
P S L GG P GSL DS L
Sbjct: 212 PPSSGRASLSSLL-------GGAPPWGSLQDPDSQGL 241
Score = 29.3 bits (64), Expect = 4.0
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 218 PDSCPSPEEPPSTAGIPQPP------SPELQHRRRLPGAQGPEGGTHPPG 261
P P P PP G+P P S ++ LPG G EG PPG
Sbjct: 901 PRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREG---PPG 947
Score = 28.5 bits (62), Expect = 6.8
Identities = 34/122 (27%), Positives = 43/122 (35%), Gaps = 23/122 (18%)
Query: 141 DELREARFAAGVAEQFAITEATLSAWSSLDEEELHPENSPQGIVQLQDLESIYLQDSLPS 200
+E+ E A + Q ++S W +P G V+ L+ Q P
Sbjct: 712 EEVEEQTTVASLGAQTLPGSDSVSTWDG-------SVRTPGGRVKEGGLKG---QKGEPG 761
Query: 201 GPSQDDSLQAFSSPS-PSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHP 259
P SP P P P P P AG P LQ +PG QGP G P
Sbjct: 762 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAG------PALQ---TVPGPQGPPG---P 809
Query: 260 PG 261
PG
Sbjct: 810 PG 811
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 40.4 bits (93), Expect = 0.002
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 195 QDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQ-HRRRLPGAQGP 253
Q LP P + S S S P PE P AG P P P+ + G+ GP
Sbjct: 699 QPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGP 758
Query: 254 EGGTHPPGSLPSMDSGSL 271
+G PGS+ S D G+L
Sbjct: 759 KGEKGEPGSIFSPDGGAL 776
Score = 38.1 bits (87), Expect = 0.009
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 198 LPSGPSQDDSLQAFSSPSPSP---DSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPE 254
+P P + SS P P P E PP G+P PP P PG +GP
Sbjct: 498 VPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGP--------PGREGPP 549
Query: 255 GGTHPPGSL 263
G T GSL
Sbjct: 550 GRTGQKGSL 558
Score = 38.1 bits (87), Expect = 0.009
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 201 GPSQDDSLQAFSSPSPSPDSCPS-----PEEPPSTAGIPQPPSPELQHRRRL--PGAQGP 253
GP + +S++ P P P P + PP G P PPS HR+ + PG GP
Sbjct: 954 GP-KGESIRGQPGP-PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGP 1011
Query: 254 EGGTHPPGSLPSMDSGSLW 272
G PPG++ + LW
Sbjct: 1012 PGPPGPPGTMGASSGVRLW 1030
Score = 35.8 bits (81), Expect = 0.043
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 220 SCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHPPG 261
S P P PP G P P P+ + R PG GP+G PPG
Sbjct: 936 SLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQG---PPG 974
Score = 31.6 bits (70), Expect = 0.81
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 201 GPSQDDSLQAFSSPSPSPDSCPSPEEPPST--------AGIPQPPSPELQHRRRLPGAQG 252
G D SL P P P P PP T A +P P L + PG +G
Sbjct: 824 GEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKG 883
Query: 253 PEGGTHPPG 261
+G PPG
Sbjct: 884 AKGEVGPPG 892
Score = 29.3 bits (64), Expect = 4.0
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 218 PDSCPSPEEPPSTAGIPQPP------SPELQHRRRLPGAQGPEGGTHPPG 261
P P P PP G+P P S ++ LPG G EG PPG
Sbjct: 486 PRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREG---PPG 532
Score = 28.5 bits (62), Expect = 6.8
Identities = 34/122 (27%), Positives = 43/122 (35%), Gaps = 23/122 (18%)
Query: 141 DELREARFAAGVAEQFAITEATLSAWSSLDEEELHPENSPQGIVQLQDLESIYLQDSLPS 200
+E+ E A + Q ++S W +P G V+ L+ Q P
Sbjct: 297 EEVEEQTTVASLGAQTLPGSDSVSTWDG-------SVRTPGGRVKEGGLKG---QKGEPG 346
Query: 201 GPSQDDSLQAFSSPS-PSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHP 259
P SP P P P P P AG P LQ +PG QGP G P
Sbjct: 347 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAG------PALQ---TVPGPQGPPG---P 394
Query: 260 PG 261
PG
Sbjct: 395 PG 396
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 40.4 bits (93), Expect = 0.002
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 195 QDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQ-HRRRLPGAQGP 253
Q LP P + S S S P PE P AG P P P+ + G+ GP
Sbjct: 879 QPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGP 938
Query: 254 EGGTHPPGSLPSMDSGSL 271
+G PGS+ S D G+L
Sbjct: 939 KGEKGEPGSIFSPDGGAL 956
Score = 38.1 bits (87), Expect = 0.009
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 198 LPSGPSQDDSLQAFSSPSPSP---DSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPE 254
+P P + SS P P P E PP G+P PP P PG +GP
Sbjct: 678 VPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGP--------PGREGPP 729
Query: 255 GGTHPPGSL 263
G T GSL
Sbjct: 730 GRTGQKGSL 738
Score = 38.1 bits (87), Expect = 0.009
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 201 GPSQDDSLQAFSSPSPSPDSCPS-----PEEPPSTAGIPQPPSPELQHRRRL--PGAQGP 253
GP + +S++ P P P P + PP G P PPS HR+ + PG GP
Sbjct: 1134 GP-KGESIRGQPGP-PGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGP 1191
Query: 254 EGGTHPPGSLPSMDSGSLW 272
G PPG++ + LW
Sbjct: 1192 PGPPGPPGTMGASSGVRLW 1210
Score = 35.8 bits (81), Expect = 0.043
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 220 SCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHPPG 261
S P P PP G P P P+ + R PG GP+G PPG
Sbjct: 1116 SLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQG---PPG 1154
Score = 31.6 bits (70), Expect = 0.81
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 201 GPSQDDSLQAFSSPSPSPDSCPSPEEPPST--------AGIPQPPSPELQHRRRLPGAQG 252
G D SL P P P P PP T A +P P L + PG +G
Sbjct: 1004 GEPGDASLGFGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKG 1063
Query: 253 PEGGTHPPG 261
+G PPG
Sbjct: 1064 AKGEVGPPG 1072
Score = 29.3 bits (64), Expect = 4.0
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 218 PDSCPSPEEPPSTAGIPQPP------SPELQHRRRLPGAQGPEGGTHPPG 261
P P P PP G+P P S ++ LPG G EG PPG
Sbjct: 666 PRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREG---PPG 712
Score = 28.5 bits (62), Expect = 6.8
Identities = 34/122 (27%), Positives = 43/122 (35%), Gaps = 23/122 (18%)
Query: 141 DELREARFAAGVAEQFAITEATLSAWSSLDEEELHPENSPQGIVQLQDLESIYLQDSLPS 200
+E+ E A + Q ++S W +P G V+ L+ Q P
Sbjct: 477 EEVEEQTTVASLGAQTLPGSDSVSTWDG-------SVRTPGGRVKEGGLKG---QKGEPG 526
Query: 201 GPSQDDSLQAFSSPS-PSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHP 259
P SP P P P P P AG P LQ +PG QGP G P
Sbjct: 527 VPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAG------PALQ---TVPGPQGPPG---P 574
Query: 260 PG 261
PG
Sbjct: 575 PG 576
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 38.9 bits (89), Expect = 0.005
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 199 PSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPP-SPELQHRRRLPGAQGPEGGT 257
PS P Q P P P + P P +PP+ A PQP ELQ + P AQ P G
Sbjct: 15 PSQPPQAPPQAQPQPPPPPPPAAPQPPQPPTAAATPQPQYVTELQSPQ--PQAQPPGGQK 72
Query: 258 HPPGSLPSMDSGS 270
LP++ + S
Sbjct: 73 QYVTELPAVPAPS 85
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 38.9 bits (89), Expect = 0.005
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 201 GPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHPP 260
GPS F P S +P +P S+ +P SP L H LPG GP G P
Sbjct: 664 GPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLP 723
Query: 261 G--SLPSMD 267
G LP D
Sbjct: 724 GFPGLPGKD 732
Score = 32.3 bits (72), Expect = 0.47
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 216 PSPDSCPSP--EEPPSTAGIPQPPSPELQHR---RRLPGAQGPEGGTHPPG-SLPSMDSG 269
P P P P E+ GI P P L+ + R PG QGP G PG SLPS+ +G
Sbjct: 1197 PGPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGLPGAPGISLPSLIAG 1256
Score = 31.6 bits (70), Expect = 0.81
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 198 LPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPE-LQHRRRLPGA---QGP 253
L P Q + +A P P P P + P G P P LQ + LPG GP
Sbjct: 1362 LQGDPGQTPTAEAVQVP-PGPLGLPGIDGIPGLTGDPGAQGPVGLQGSKGLPGIPGKDGP 1420
Query: 254 EGGTHPPGSL 263
G PPG+L
Sbjct: 1421 SGLPGPPGAL 1430
Score = 28.5 bits (62), Expect = 6.8
Identities = 24/70 (34%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 201 GPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPS-PELQHRRRLPGAQGPEGGTHP 259
G D P+ P + P P AG P P P L R PG GP G P
Sbjct: 1226 GQKGDRGFPGLQGPAGLPGA-PGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPG---P 1281
Query: 260 PGSLPSMDSG 269
PG PS + G
Sbjct: 1282 PG--PSSNQG 1289
Score = 28.1 bits (61), Expect = 8.9
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 15/49 (30%)
Query: 216 PSPDSCPSPEEPPSTAGIPQPPSPELQ----HRRR-----LPGAQGPEG 255
P D P P PP PPSPE + H + L G QGP+G
Sbjct: 426 PGRDGLPGPPGPPG------PPSPEFETETLHNKESGFPGLRGEQGPKG 468
>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
Length = 1235
Score = 38.9 bits (89), Expect = 0.005
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 20/125 (16%)
Query: 133 DEHYCCLPDELREARFAAGVAEQFAIT----EATLSAWSSLDEEELHPENSPQGIVQLQD 188
DE LP+E+ E R + V ++ +I T S W ++E L E G VQ
Sbjct: 836 DEEVWGLPEEIEELRVPSLVPQERSIVGQEEAGTWSLWGK-EDESLLDEEFELGWVQGPA 894
Query: 189 LESIYLQDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLP 248
L + P +++ +P D CPSP+ P P+PP H R P
Sbjct: 895 LTPV------PEEEEEEEEGAPIGTPRDPGDGCPSPDIP------PEPPP---THLRPCP 939
Query: 249 GAQGP 253
+Q P
Sbjct: 940 ASQLP 944
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 38.9 bits (89), Expect = 0.005
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 201 GPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHPP 260
GPS F P S +P +P S+ +P SP L H LPG GP G P
Sbjct: 663 GPSGFPGTPGFPGPKGSRGLPGTPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKGLP 722
Query: 261 G--SLPSMD 267
G LP D
Sbjct: 723 GFPGLPGKD 731
Score = 32.3 bits (72), Expect = 0.47
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 216 PSPDSCPSP--EEPPSTAGIPQPPSPELQHR---RRLPGAQGPEGGTHPPG-SLPSMDSG 269
P P P P E+ GI P P L+ + R PG QGP G PG SLPS+ +G
Sbjct: 1196 PGPAGLPGPKGEKGYPGIGIGAPGKPGLRGQKGDRGFPGLQGPAGLPGAPGISLPSLIAG 1255
Score = 31.6 bits (70), Expect = 0.81
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 198 LPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPE-LQHRRRLPGA---QGP 253
L P Q + +A P P P P + P G P P LQ + LPG GP
Sbjct: 1361 LQGDPGQTPTAEAVQVP-PGPLGLPGIDGIPGLTGDPGAQGPVGLQGSKGLPGIPGKDGP 1419
Query: 254 EGGTHPPGSL 263
G PPG+L
Sbjct: 1420 SGLPGPPGAL 1429
Score = 28.5 bits (62), Expect = 6.8
Identities = 24/70 (34%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 201 GPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPS-PELQHRRRLPGAQGPEGGTHP 259
G D P+ P + P P AG P P P L R PG GP G P
Sbjct: 1225 GQKGDRGFPGLQGPAGLPGA-PGISLPSLIAGQPGDPGRPGLDGERGRPGPAGPPG---P 1280
Query: 260 PGSLPSMDSG 269
PG PS + G
Sbjct: 1281 PG--PSSNQG 1288
Score = 28.1 bits (61), Expect = 8.9
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 15/49 (30%)
Query: 216 PSPDSCPSPEEPPSTAGIPQPPSPELQ----HRRR-----LPGAQGPEG 255
P D P P PP PPSPE + H + L G QGP+G
Sbjct: 425 PGRDGLPGPPGPPG------PPSPEFETETLHNKESGFPGLRGEQGPKG 467
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 38.5 bits (88), Expect = 0.007
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 199 PSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTH 258
P G DD + + SP P P P PP G P P PE R+ GA+G G
Sbjct: 1361 PPGDKGDDG-EPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPE--GRQGEKGAKGEAGLEG 1417
Query: 259 PPG 261
PPG
Sbjct: 1418 PPG 1420
Score = 33.5 bits (75), Expect = 0.21
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 199 PSGPSQDDSLQAFSSPS-----PSPDSCPSPEEP---PSTAGIPQPPSPELQHRRRLPGA 250
P GP + + S PS P P P + P P G P P P PG
Sbjct: 1301 PPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGP--------PGE 1352
Query: 251 QGPEGGTHPPG 261
GP G PPG
Sbjct: 1353 PGPAGQDGPPG 1363
Score = 32.7 bits (73), Expect = 0.36
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 15/63 (23%)
Query: 199 PSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTH 258
P G S Q + PS P PP G+P PP P+ GA+G G T
Sbjct: 1508 PQGSSGPKGEQGITGPS-------GPIGPPGPPGLPGPPGPK--------GAKGSSGPTG 1552
Query: 259 PPG 261
P G
Sbjct: 1553 PKG 1555
Score = 30.4 bits (67), Expect = 1.8
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 215 SPSPDSCPSPEEPPSTAGI--PQPPSPELQHRRRL-----PGAQGPEGGTHPPGSLPSMD 267
SP PD P P PP G+ P E H + PG QG +G PG P
Sbjct: 1454 SPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPGLIGLIGPPGEQGEKGDRGLPG--PQGS 1511
Query: 268 SGSLWEE 274
SG E+
Sbjct: 1512 SGPKGEQ 1518
Score = 30.0 bits (66), Expect = 2.4
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 218 PDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHP--PGSLPSM--DSGSLWE 273
P P P GIP P + LPG+ GP+G P P LP + DSG E
Sbjct: 1427 PQGAPGKPGPDGLRGIPGPVGEQ-----GLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGE 1481
Query: 274 E 274
+
Sbjct: 1482 K 1482
Score = 28.9 bits (63), Expect = 5.2
Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 27/90 (30%)
Query: 199 PSGPSQDDSLQAFSS----------PSP----SPDSCPSPEEPPSTAGIPQPPSPELQ-- 242
P GP DD + P P P P P PP G+ P P+
Sbjct: 653 PPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVG 712
Query: 243 --------HRRRLPGAQG---PEGGTHPPG 261
++ PGAQG P+G PPG
Sbjct: 713 PQGEPGPPGQQGNPGAQGLPGPQGAIGPPG 742
Score = 28.1 bits (61), Expect = 8.9
Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 199 PSGPSQDDSLQAFSSPS-----PSPDSCPSPEEPPSTAGIPQPPS-PELQHRRRLPGAQG 252
P GP + L + P P P + PP G P P L G +G
Sbjct: 1019 PPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEG 1078
Query: 253 PEGGTHPPGS 262
P G P GS
Sbjct: 1079 PPGPPGPAGS 1088
>gi|40807465 zinc finger protein 341 [Homo sapiens]
Length = 847
Score = 38.1 bits (87), Expect = 0.009
Identities = 58/235 (24%), Positives = 93/235 (39%), Gaps = 50/235 (21%)
Query: 28 PDLPSGRTPTVAPDCVIGKDKQMDFCWDPWQRCFQTTNGYLSDSRSRPGNYNVAALATSS 87
PD P+G++ AP + D + F ++ F + +++ R + N ALAT S
Sbjct: 31 PD-PTGQSVN-APPAIQPLDDEDVFLCGKCKKQFNSLPAFMTHKREQCQG-NAPALATVS 87
Query: 88 LVGVVQSIKDHITKPTAMARGRVAHLIEWKGWSAQPAGWELSPAEDEHYCCLPDELREAR 147
L SI PTA+ + + PA ++S + P L +
Sbjct: 88 LA--TNSIYPPSAAPTAVQQ------------APTPANRQIST----YITVPPSPLIQTL 129
Query: 148 FAAGVAEQFAITEATLSAWSSLDEEELHPENSPQGIVQLQDLESIYLQDSLPSGPSQDDS 207
+ + + +SA++SLD+ PQG +Q +++ S+PS +Q
Sbjct: 130 VQGNILVSDDVLMSAMSAFTSLDQP------MPQGPPPVQSSLNMH---SVPSYLTQP-- 178
Query: 208 LQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHPPGS 262
P P P P P PP PQPP P P + GP G +P G+
Sbjct: 179 ------PPPPPPPPPLPPPPP-----PQPPPPP-------PQSLGPPGRPNPGGN 215
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 37.7 bits (86), Expect = 0.011
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 199 PSGPSQDDSLQAFSSPSPSPDSCPSPEEP-----PSTAGIPQPPSPELQHRRRLPGAQGP 253
P G +DS S+P P+P S P P P S++G P SP L R G+ G
Sbjct: 301 PGGRGPEDSWLLLSAPGPTPAS-PRPASPCGKRRYSSSGTPSSASPALSRR----GSLGE 355
Query: 254 EGGTHPP 260
EG PP
Sbjct: 356 EGSEPPP 362
>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 2 [Homo sapiens]
Length = 902
Score = 37.7 bits (86), Expect = 0.011
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 199 PSGPSQDDSLQAFSSPSPSPDSCPSPEEP-----PSTAGIPQPPSPELQHRRRLPGAQGP 253
P G +DS S+P P+P S P P P S++G P SP L R G+ G
Sbjct: 238 PGGRGPEDSWLLLSAPGPTPAS-PRPASPCGKRRYSSSGTPSSASPALSRR----GSLGE 292
Query: 254 EGGTHPP 260
EG PP
Sbjct: 293 EGSEPPP 299
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 37.7 bits (86), Expect = 0.011
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 213 SPSPSPDSCPSPEEPPSTAGIPQPPSP---ELQHRRRLPGAQGPEGGTHPPGSLPSMDSG 269
+P P+P S P PP G P PP+ ++ PG GP+GG P G P G
Sbjct: 164 APPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPG 223
Score = 30.4 bits (67), Expect = 1.8
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 195 QDSLPSGPSQDDSLQAFSSPSPSP---DSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQ 251
Q+ P GP S P P P P P++PP P P P Q ++
Sbjct: 42 QNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPP 101
Query: 252 GPEGGTHP-----PGSLPSMDS 268
P+ + P PG P + S
Sbjct: 102 PPQDSSKPVVAQGPGPAPGVGS 123
>gi|89941479 hypothetical protein LOC148137 [Homo sapiens]
Length = 425
Score = 37.7 bits (86), Expect = 0.011
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 11/102 (10%)
Query: 159 TEATLSAWSSLDEEELHPENSPQGIVQLQDLESIYLQDSLPS-GPSQDDSLQAFSSPSPS 217
++A++S+ SSL + + P L ++ DS GP +A +SP+P+
Sbjct: 209 SKASISSSSSLSPSDASTSSFPTSSDGLSPFSETFIPDSSKGLGP------RAPASPAPA 262
Query: 218 PDSCPSPEEPPSTAGIPQPPSPEL----QHRRRLPGAQGPEG 255
P+P P+++ P P ++ + RR+L AQG +G
Sbjct: 263 QAQTPTPAPAPASSQAPLRPEDDILYQWRQRRKLEQAQGSKG 304
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 37.4 bits (85), Expect = 0.015
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 198 LPSGP----SQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRL--PGAQ 251
LP P + LQ P P P S P P+ PP PQ P+P QH ++ P +
Sbjct: 392 LPGSPLFTRAPPPKLQPQPQPQPQPQSQPQPQLPPQPQTQPQTPTPAPQHPQQTWPPVNE 451
Query: 252 GP 253
GP
Sbjct: 452 GP 453
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 37.4 bits (85), Expect = 0.015
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 198 LPSGP----SQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRL--PGAQ 251
LP P + LQ P P P S P P+ PP PQ P+P QH ++ P +
Sbjct: 392 LPGSPLFTRAPPPKLQPQPQPQPQPQSQPQPQLPPQPQTQPQTPTPAPQHPQQTWPPVNE 451
Query: 252 GP 253
GP
Sbjct: 452 GP 453
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 37.4 bits (85), Expect = 0.015
Identities = 26/73 (35%), Positives = 27/73 (36%), Gaps = 14/73 (19%)
Query: 198 LPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGT 257
LP GP P P P P P PP G P PP P R PG GP
Sbjct: 292 LPPGP-----------PPPVPGYGPPPGPPPPQQGPPPPPGP---FPPRPPGPLGPPLTL 337
Query: 258 HPPGSLPSMDSGS 270
PP LP G+
Sbjct: 338 APPPHLPGPPPGA 350
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 37.0 bits (84), Expect = 0.019
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 207 SLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGG 256
S++ F S P P PSP E PS + P PSP + LP + G E G
Sbjct: 814 SVELFPSEEPFPSKEPSPSEEPSASEEPYTPSPPVPSWTELP-SSGEESG 862
Score = 28.9 bits (63), Expect = 5.2
Identities = 18/49 (36%), Positives = 19/49 (38%)
Query: 207 SLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEG 255
S + F S PSP PS E P T P P EL GA G
Sbjct: 820 SEEPFPSKEPSPSEEPSASEEPYTPSPPVPSWTELPSSGEESGAPDVSG 868
Score = 28.1 bits (61), Expect = 8.9
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 170 DEEELHPENSPQGIVQLQDLESIYLQDSLPSGPSQDDSLQAFS-------SPSPSPDSCP 222
++ E P +P G L + L P+G + ++S + S S PSP P
Sbjct: 738 NQTEWEPAYTPVGTSPLPGI----LPTWPPTGAATEESTEGPSATEVPSASEEPSPSEVP 793
Query: 223 SPEEPPSTAGIPQP-----PSPEL 241
P E PS + P P PS EL
Sbjct: 794 FPSEEPSPSEEPFPSVRPFPSVEL 817
>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
Length = 2317
Score = 37.0 bits (84), Expect = 0.019
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 207 SLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGG 256
S++ F S P P PSP E PS + P PSP + LP + G E G
Sbjct: 814 SVELFPSEEPFPSKEPSPSEEPSASEEPYTPSPPVPSWTELP-SSGEESG 862
Score = 28.9 bits (63), Expect = 5.2
Identities = 18/49 (36%), Positives = 19/49 (38%)
Query: 207 SLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEG 255
S + F S PSP PS E P T P P EL GA G
Sbjct: 820 SEEPFPSKEPSPSEEPSASEEPYTPSPPVPSWTELPSSGEESGAPDVSG 868
Score = 28.1 bits (61), Expect = 8.9
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 170 DEEELHPENSPQGIVQLQDLESIYLQDSLPSGPSQDDSLQAFS-------SPSPSPDSCP 222
++ E P +P G L + L P+G + ++S + S S PSP P
Sbjct: 738 NQTEWEPAYTPVGTSPLPGI----LPTWPPTGAATEESTEGPSATEVPSASEEPSPSEVP 793
Query: 223 SPEEPPSTAGIPQP-----PSPEL 241
P E PS + P P PS EL
Sbjct: 794 FPSEEPSPSEEPFPSVRPFPSVEL 817
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 37.0 bits (84), Expect = 0.019
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 198 LPSGPSQDDSLQA-FSSPSPSPDSCPSPEEPPSTAG--IPQPPSPELQH---RRRLPGAQ 251
+PSGPS+ S + S P P P P S++G I Q S +Q R L G Q
Sbjct: 976 IPSGPSEGGSSSTMYVSGPPGPPGPPGPPGSISSSGQEIQQYISEYMQSDSIRSYLSGVQ 1035
Query: 252 GPEGGTHPPGSLPSMDSGSLWEEDEV 277
GP G PPG + ++ +G ++ E+
Sbjct: 1036 GPPGPPGPPGPVTTI-TGETFDYSEL 1060
Score = 33.9 bits (76), Expect = 0.16
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 214 PSPSPDSCPSPEEPPSTAGIPQPPSPE----------LQHRRRLPGAQGPEGGTHPPG 261
P PS P P PP G+P PP P L PG GP+G PPG
Sbjct: 868 PGPSIPGPPGPRGPPGE-GLPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPG 924
Score = 33.5 bits (75), Expect = 0.21
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 199 PSGPSQDDSLQAFSSPSP-SPDSCPSPEEPPSTAGIPQPPSPE-------LQHRRRLPGA 250
P G + A P P P P P ++G P P P L+ LPG
Sbjct: 637 PPGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGV 696
Query: 251 QGPEGGTHPPGSLPSMDSG 269
+G +G PPG P D G
Sbjct: 697 KGDKGPMGPPG--PKGDQG 713
Score = 32.0 bits (71), Expect = 0.62
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 213 SPSPS-PDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHPPGS---LPSMDS 268
+P P+ P P +E + G P PP P +PG GP G PPG P
Sbjct: 837 APGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRG---PPGEGLPGPPGPP 893
Query: 269 GSLWEEDEVF 278
GS E F
Sbjct: 894 GSFLSNSETF 903
Score = 31.2 bits (69), Expect = 1.1
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 212 SSPSPSPDSCPSPEEPPSTAGIPQPPS----------PELQHRRRLPGAQGPEGGTHPPG 261
+S S + P P PP G P PP P Q L G GP G PPG
Sbjct: 810 TSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPG 869
Query: 262 -SLP 264
S+P
Sbjct: 870 PSIP 873
Score = 29.3 bits (64), Expect = 4.0
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 216 PSPDSCPSPEEPPSTAGIPQPPSPE-LQHRRRLPGAQGPEGGTHPPGSLPSMDSGSLWE 273
P P P P+ P G P E +R G GP G PPGS + G+ E
Sbjct: 593 PGPLGHPGPQGPKGQKGSVGDPGMEGPMGQRGREGPMGPRGEAGPPGSGEKGERGAAGE 651
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 37.0 bits (84), Expect = 0.019
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 189 LESIYLQDSLPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLP 248
+E + + + PSG D + SPSPD P+ E P A P PP P L + P
Sbjct: 501 IEILPVAVATPSGG--DAPTPGVPTGSPSPDLAPAAEPAPGAAPPPPPPLPGLPSPQEAP 558
Query: 249 GAQGPE-----GGTHPPGSLP 264
+ P+ G PP + P
Sbjct: 559 PSAPPQAPPLPGSPEPPPAPP 579
Score = 35.0 bits (79), Expect = 0.073
Identities = 28/81 (34%), Positives = 32/81 (39%), Gaps = 18/81 (22%)
Query: 195 QDSLPSGPSQDDSLQAFSSPSPSPD-------SCPSPEEPPSTAGIPQPPSPELQHRRRL 247
Q++ PS P Q L P P+P P P PP T G P PP P
Sbjct: 555 QEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPPPGTDG-PVPPPP-------- 605
Query: 248 PGAQGPEGGTHPPGSLPSMDS 268
P P GG PP +L DS
Sbjct: 606 PPPPPPPGG--PPDALGRRDS 624
Score = 31.6 bits (70), Expect = 0.81
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 202 PSQDDSLQAFSSPSPSPDSCPSPEEPPSTAGIPQPPSPELQHRRRLPGAQGPEGGTHPPG 261
P+ + + A P P PSP+E P +A PP LPG+ P PG
Sbjct: 532 PAAEPAPGAAPPPPPPLPGLPSPQEAPPSAPPQAPP---------LPGSPEPPPAPPLPG 582
Query: 262 SLP 264
LP
Sbjct: 583 DLP 585
Score = 28.1 bits (61), Expect = 8.9
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 198 LPSGPSQDDSLQAFSSPSPSPDSCPSPEEPPSTAG-IPQPPSPELQHRRRLPGAQGPEGG 256
LP PS ++ + +P P P P G +P PP P PG GP
Sbjct: 548 LPGLPSPQEAPPSAPPQAPPLPGSPEPPPAPPLPGDLPPPPPPPPPP----PGTDGPVPP 603
Query: 257 THPPGSLP 264
PP P
Sbjct: 604 PPPPPPPP 611
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 36.6 bits (83), Expect = 0.025
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 216 PSPDSCPSPEEP-PSTAGIPQPPSPEL----QHRRRLPGAQGPEGGTHPPGSLP 264
P P S P PE P P +P+ P P + Q + LPG P G PP +P
Sbjct: 417 PGPLSTPVPELPGPPATAVPELPGPSVTPVPQLSQELPGLPAPSMGLEPPQEVP 470
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 36.6 bits (83), Expect = 0.025
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 216 PSPDSCPSPEEP-PSTAGIPQPPSPEL----QHRRRLPGAQGPEGGTHPPGSLP 264
P P S P PE P P +P+ P P + Q + LPG P G PP +P
Sbjct: 417 PGPLSTPVPELPGPPATAVPELPGPSVTPVPQLSQELPGLPAPSMGLEPPQEVP 470
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,090,319
Number of Sequences: 37866
Number of extensions: 928155
Number of successful extensions: 10637
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 689
Number of HSP's that attempted gapping in prelim test: 6637
Number of HSP's gapped (non-prelim): 3912
length of query: 280
length of database: 18,247,518
effective HSP length: 101
effective length of query: 179
effective length of database: 14,423,052
effective search space: 2581726308
effective search space used: 2581726308
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.