Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 15743548
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15743548 LIM and senescent cell antigen-like domains 3 [Homo
sapiens]
(117 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15743548 LIM and senescent cell antigen-like domains 3 [Homo ... 247 1e-66
gi|239741720 PREDICTED: hypothetical protein XP_002342298 [Homo ... 241 7e-65
gi|13518026 LIM and senescent cell antigen-like domains 1 [Homo ... 113 4e-26
gi|238859658 LIM and senescent cell antigen-like domains 2 isofo... 94 2e-20
gi|238776786 LIM and senescent cell antigen-like domains 2 isofo... 94 2e-20
gi|40804748 LIM and senescent cell antigen-like domains 2 isofor... 94 2e-20
gi|238776788 LIM and senescent cell antigen-like domains 2 isofo... 92 9e-20
gi|58530845 zyxin [Homo sapiens] 42 1e-04
gi|4508047 zyxin [Homo sapiens] 42 1e-04
gi|109638745 transforming growth factor beta 1 induced transcrip... 39 0.001
gi|21361591 transforming growth factor beta 1 induced transcript... 39 0.001
gi|170932518 paxillin isoform 3 [Homo sapiens] 38 0.002
gi|170932516 paxillin isoform 2 [Homo sapiens] 38 0.002
gi|170932514 paxillin isoform 1 [Homo sapiens] 38 0.002
gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens] 38 0.002
gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens] 38 0.002
gi|21956641 ISL LIM homeobox 2 [Homo sapiens] 37 0.003
gi|221316659 leupaxin isoform 1 [Homo sapiens] 37 0.003
gi|4758670 leupaxin isoform 2 [Homo sapiens] 37 0.003
gi|7657307 LIM domains containing 1 [Homo sapiens] 37 0.004
gi|30795196 LIM homeobox protein 2 [Homo sapiens] 37 0.004
gi|115387114 islet-1 [Homo sapiens] 36 0.007
gi|28893581 LIM homeobox transcription factor 1, alpha isoform a... 35 0.010
gi|87159836 four and a half LIM domains 2 [Homo sapiens] 35 0.010
gi|87159834 four and a half LIM domains 2 [Homo sapiens] 35 0.010
gi|42403575 four and a half LIM domains 2 [Homo sapiens] 35 0.010
gi|87159832 four and a half LIM domains 2 [Homo sapiens] 35 0.010
gi|7662330 actin binding LIM protein family, member 3 [Homo sapi... 35 0.010
gi|11641283 LIM homeobox protein 5 [Homo sapiens] 35 0.010
gi|7657309 LIM and cysteine-rich domains 1 [Homo sapiens] 35 0.010
>gi|15743548 LIM and senescent cell antigen-like domains 3 [Homo
sapiens]
Length = 117
Score = 247 bits (631), Expect = 1e-66
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MAFSGRARPCIIPENEEIPRAALNTVHEANGTEDERAVSKLQRRHSDVKVYKEFCDFYAK 60
MAFSGRARPCIIPENEEIPRAALNTVHEANGTEDERAVSKLQRRHSDVKVYKEFCDFYAK
Sbjct: 1 MAFSGRARPCIIPENEEIPRAALNTVHEANGTEDERAVSKLQRRHSDVKVYKEFCDFYAK 60
Query: 61 FNMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYEERT 117
FNMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYEERT
Sbjct: 61 FNMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYEERT 117
>gi|239741720 PREDICTED: hypothetical protein XP_002342298 [Homo
sapiens]
Length = 248
Score = 241 bits (616), Expect = 7e-65
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MAFSGRARPCIIPENEEIPRAALNTVHEANGTEDERAVSKLQRRHSDVKVYKEFCDFYAK 60
MAFSGRARPCIIPENEEIPRAALNTVHEANGTEDERAVSKLQRRHSDVKVYKEFCDFYAK
Sbjct: 1 MAFSGRARPCIIPENEEIPRAALNTVHEANGTEDERAVSKLQRRHSDVKVYKEFCDFYAK 60
Query: 61 FNMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
FNMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE
Sbjct: 61 FNMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
>gi|13518026 LIM and senescent cell antigen-like domains 1 [Homo
sapiens]
Length = 325
Score = 113 bits (282), Expect = 4e-26
Identities = 51/52 (98%), Positives = 51/52 (98%)
Query: 63 MANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
MANALASATCERCKGGFAPAE IVNSNGELYHEQCFVCAQCFQQFPEGLFYE
Sbjct: 1 MANALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 52
Score = 29.3 bits (64), Expect = 0.70
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 85 IVNSNGELYHEQCFVCAQCFQQFPEGLFYEER 116
+VN+ G+ +H + FVCA+C + F YE +
Sbjct: 204 VVNAMGKQWHVEHFVCAKCEKPFLGHRHYERK 235
>gi|238859658 LIM and senescent cell antigen-like domains 2 isoform
1 [Homo sapiens]
Length = 363
Score = 94.4 bits (233), Expect = 2e-20
Identities = 40/53 (75%), Positives = 47/53 (88%)
Query: 62 NMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
NM++ALA+A C+RC+ F+PAE IVNSNGELYHE CFVCAQCF+ FPEGLFYE
Sbjct: 27 NMSDALANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYE 79
Score = 29.3 bits (64), Expect = 0.70
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 85 IVNSNGELYHEQCFVCAQCFQQFPEGLFYEER 116
+VN+ G+ +H + FVCA+C + F YE++
Sbjct: 231 VVNALGKQWHVEHFVCAKCEKPFLGHRHYEKK 262
>gi|238776786 LIM and senescent cell antigen-like domains 2 isoform
3 [Homo sapiens]
Length = 341
Score = 94.4 bits (233), Expect = 2e-20
Identities = 40/53 (75%), Positives = 47/53 (88%)
Query: 62 NMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
NM++ALA+A C+RC+ F+PAE IVNSNGELYHE CFVCAQCF+ FPEGLFYE
Sbjct: 5 NMSDALANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYE 57
Score = 29.3 bits (64), Expect = 0.70
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 85 IVNSNGELYHEQCFVCAQCFQQFPEGLFYEER 116
+VN+ G+ +H + FVCA+C + F YE++
Sbjct: 209 VVNALGKQWHVEHFVCAKCEKPFLGHRHYEKK 240
>gi|40804748 LIM and senescent cell antigen-like domains 2 isoform 2
[Homo sapiens]
Length = 365
Score = 94.4 bits (233), Expect = 2e-20
Identities = 40/53 (75%), Positives = 47/53 (88%)
Query: 62 NMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
NM++ALA+A C+RC+ F+PAE IVNSNGELYHE CFVCAQCF+ FPEGLFYE
Sbjct: 29 NMSDALANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYE 81
Score = 29.3 bits (64), Expect = 0.70
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 85 IVNSNGELYHEQCFVCAQCFQQFPEGLFYEER 116
+VN+ G+ +H + FVCA+C + F YE++
Sbjct: 233 VVNALGKQWHVEHFVCAKCEKPFLGHRHYEKK 264
>gi|238776788 LIM and senescent cell antigen-like domains 2 isoform
5 [Homo sapiens]
Length = 336
Score = 92.0 bits (227), Expect = 9e-20
Identities = 39/52 (75%), Positives = 46/52 (88%)
Query: 63 MANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
M++ALA+A C+RC+ F+PAE IVNSNGELYHE CFVCAQCF+ FPEGLFYE
Sbjct: 1 MSDALANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYE 52
Score = 29.3 bits (64), Expect = 0.70
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 85 IVNSNGELYHEQCFVCAQCFQQFPEGLFYEER 116
+VN+ G+ +H + FVCA+C + F YE++
Sbjct: 204 VVNALGKQWHVEHFVCAKCEKPFLGHRHYEKK 235
>gi|58530845 zyxin [Homo sapiens]
Length = 572
Score = 42.0 bits (97), Expect = 1e-04
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 65 NALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFY 113
N + C RC A A+ V + G+L+H CF C QC QQ FY
Sbjct: 377 NVAVNELCGRCHQPLARAQPAVRALGQLFHIACFTCHQCAQQLQGQQFY 425
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 71 TCERCKGGFAP-AETIVNSNGELYHEQCFVCAQC 103
T E+C P + ++ + G+ YH CF C C
Sbjct: 440 TLEKCNTCGEPITDRMLRATGKAYHPHCFTCVVC 473
>gi|4508047 zyxin [Homo sapiens]
Length = 572
Score = 42.0 bits (97), Expect = 1e-04
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 65 NALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFY 113
N + C RC A A+ V + G+L+H CF C QC QQ FY
Sbjct: 377 NVAVNELCGRCHQPLARAQPAVRALGQLFHIACFTCHQCAQQLQGQQFY 425
Score = 28.1 bits (61), Expect = 1.6
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 71 TCERCKGGFAP-AETIVNSNGELYHEQCFVCAQC 103
T E+C P + ++ + G+ YH CF C C
Sbjct: 440 TLEKCNTCGEPITDRMLRATGKAYHPHCFTCVVC 473
>gi|109638745 transforming growth factor beta 1 induced transcript 1
isoform 1 [Homo sapiens]
Length = 461
Score = 38.5 bits (88), Expect = 0.001
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 67 LASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
L + C+ C+G + +++ L+H CFVC +CF F G F+E
Sbjct: 341 LFAPRCQGCQGPIL--DNYISALSALWHPDCFVCRECFAPFSGGSFFE 386
>gi|21361591 transforming growth factor beta 1 induced transcript 1
isoform 2 [Homo sapiens]
Length = 444
Score = 38.5 bits (88), Expect = 0.001
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 67 LASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
L + C+ C+G + +++ L+H CFVC +CF F G F+E
Sbjct: 324 LFAPRCQGCQGPIL--DNYISALSALWHPDCFVCRECFAPFSGGSFFE 369
>gi|170932518 paxillin isoform 3 [Homo sapiens]
Length = 424
Score = 38.1 bits (87), Expect = 0.002
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 77 GGFAPA--ETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
GG A A E +++ L+H +CFVC +CF F G F+E
Sbjct: 310 GGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFFE 349
Score = 29.6 bits (65), Expect = 0.53
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 67 LASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
+A C CK A +V + G+ +H + FVC C ++ F+E
Sbjct: 186 VAKGVCGACKKPIAGQ--VVTAMGKTWHPEHFVCTHCQEEIGSRNFFE 231
Score = 27.7 bits (60), Expect = 2.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 86 VNSNGELYHEQCFVCAQCFQQFPEGLFYEE 115
+ + + +H + FVCA C +Q +G F E+
Sbjct: 380 ITAMAKKFHPEHFVCAFCLKQLNKGTFKEQ 409
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 67 LASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQF-PEGLFYEE 115
L S C C G + +V + +H + F CAQC F PEG F+E+
Sbjct: 245 LFSPRCYYCNGPIL--DKVVTALDRTWHPEHFFCAQCGAFFGPEG-FHEK 291
>gi|170932516 paxillin isoform 2 [Homo sapiens]
Length = 557
Score = 38.1 bits (87), Expect = 0.002
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 77 GGFAPA--ETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
GG A A E +++ L+H +CFVC +CF F G F+E
Sbjct: 443 GGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFFE 482
Score = 29.6 bits (65), Expect = 0.53
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 67 LASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
+A C CK A +V + G+ +H + FVC C ++ F+E
Sbjct: 319 VAKGVCGACKKPIAGQ--VVTAMGKTWHPEHFVCTHCQEEIGSRNFFE 364
Score = 27.7 bits (60), Expect = 2.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 86 VNSNGELYHEQCFVCAQCFQQFPEGLFYEE 115
+ + + +H + FVCA C +Q +G F E+
Sbjct: 513 ITAMAKKFHPEHFVCAFCLKQLNKGTFKEQ 542
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 67 LASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQF-PEGLFYEE 115
L S C C G + +V + +H + F CAQC F PEG F+E+
Sbjct: 378 LFSPRCYYCNGPIL--DKVVTALDRTWHPEHFFCAQCGAFFGPEG-FHEK 424
>gi|170932514 paxillin isoform 1 [Homo sapiens]
Length = 591
Score = 38.1 bits (87), Expect = 0.002
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 77 GGFAPA--ETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
GG A A E +++ L+H +CFVC +CF F G F+E
Sbjct: 477 GGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFFE 516
Score = 29.6 bits (65), Expect = 0.53
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 67 LASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
+A C CK A +V + G+ +H + FVC C ++ F+E
Sbjct: 353 VAKGVCGACKKPIAGQ--VVTAMGKTWHPEHFVCTHCQEEIGSRNFFE 398
Score = 27.7 bits (60), Expect = 2.0
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 86 VNSNGELYHEQCFVCAQCFQQFPEGLFYEE 115
+ + + +H + FVCA C +Q +G F E+
Sbjct: 547 ITAMAKKFHPEHFVCAFCLKQLNKGTFKEQ 576
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 67 LASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQF-PEGLFYEE 115
L S C C G + +V + +H + F CAQC F PEG F+E+
Sbjct: 412 LFSPRCYYCNGPIL--DKVVTALDRTWHPEHFFCAQCGAFFGPEG-FHEK 458
>gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens]
Length = 397
Score = 37.7 bits (86), Expect = 0.002
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 56 DFYAKFNMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEG 110
D+Y +F++ C RC G + +E ++ + +YH CF C+ C + G
Sbjct: 123 DYYRRFSVQR------CARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTG 171
>gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens]
Length = 388
Score = 37.7 bits (86), Expect = 0.002
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 56 DFYAKFNMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEG 110
D+Y +F++ C RC G + +E ++ + +YH CF C+ C + G
Sbjct: 114 DYYRRFSVQR------CARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTG 162
>gi|21956641 ISL LIM homeobox 2 [Homo sapiens]
Length = 359
Score = 37.4 bits (85), Expect = 0.003
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 72 CERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEG 110
C +C+ GF+ ++ ++ + +YH +CF C+ C +Q G
Sbjct: 89 CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPG 127
>gi|221316659 leupaxin isoform 1 [Homo sapiens]
Length = 391
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 52 KEFC--DFYAKFNMANALASATCERCKGGFAPA-ETIVNSNGELYHEQCFVCAQCFQQFP 108
K +C DF A F+ +C G P E +++ ++H +CFVC CF F
Sbjct: 260 KPYCRKDFLAMFS----------PKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFS 309
Query: 109 EGLFYE 114
G F+E
Sbjct: 310 TGSFFE 315
Score = 30.0 bits (66), Expect = 0.41
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 86 VNSNGELYHEQCFVCAQCFQQFPEGLFYEE 115
+++ G +H + FVCA C Q +G+F E+
Sbjct: 346 ISAMGYKFHPEHFVCAFCLTQLSKGIFREQ 375
Score = 26.9 bits (58), Expect = 3.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 82 AETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
A ++++ G+ +H + FVC C ++ F+E
Sbjct: 165 AGKVIHALGQSWHPEHFVCTHCKEEIGSSPFFE 197
>gi|4758670 leupaxin isoform 2 [Homo sapiens]
Length = 386
Score = 37.0 bits (84), Expect = 0.003
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 52 KEFC--DFYAKFNMANALASATCERCKGGFAPA-ETIVNSNGELYHEQCFVCAQCFQQFP 108
K +C DF A F+ +C G P E +++ ++H +CFVC CF F
Sbjct: 255 KPYCRKDFLAMFS----------PKCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFS 304
Query: 109 EGLFYE 114
G F+E
Sbjct: 305 TGSFFE 310
Score = 30.0 bits (66), Expect = 0.41
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 86 VNSNGELYHEQCFVCAQCFQQFPEGLFYEE 115
+++ G +H + FVCA C Q +G+F E+
Sbjct: 341 ISAMGYKFHPEHFVCAFCLTQLSKGIFREQ 370
Score = 26.9 bits (58), Expect = 3.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 82 AETIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 114
A ++++ G+ +H + FVC C ++ F+E
Sbjct: 160 AGKVIHALGQSWHPEHFVCTHCKEEIGSSPFFE 192
>gi|7657307 LIM domains containing 1 [Homo sapiens]
Length = 676
Score = 36.6 bits (83), Expect = 0.004
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 72 CERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFY 113
C +C G A + G LYH+ CF CA C ++ FY
Sbjct: 472 CVKCSKGVFGAGQACQAMGNLYHDTCFTCAACSRKLRGKAFY 513
>gi|30795196 LIM homeobox protein 2 [Homo sapiens]
Length = 406
Score = 36.6 bits (83), Expect = 0.004
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 56 DFYAKFNMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEG 110
D+Y +F++ C RC G + +E ++ + +YH CF C C + G
Sbjct: 105 DYYRRFSVQR------CARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTG 153
>gi|115387114 islet-1 [Homo sapiens]
Length = 349
Score = 35.8 bits (81), Expect = 0.007
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 72 CERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEG 110
C +C GF+ + ++ + ++YH +CF C C +Q G
Sbjct: 79 CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPG 117
>gi|28893581 LIM homeobox transcription factor 1, alpha isoform a
[Homo sapiens]
Length = 382
Score = 35.4 bits (80), Expect = 0.010
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 58 YAKFNMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEG 110
Y K++ A C C AP E ++ + +YH CF C C +Q +G
Sbjct: 81 YCKYDYEKLFA-VKCGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKG 132
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 70 ATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEGLFYEER 116
+ CE C+ ++ N +HEQC CA C + FY ++
Sbjct: 33 SVCEGCQRVILD-RFLLRLNDSFWHEQCVQCASCKEPLETTCFYRDK 78
>gi|87159836 four and a half LIM domains 2 [Homo sapiens]
Length = 279
Score = 35.4 bits (80), Expect = 0.010
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 69 SATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQ 105
S+ C+ CK P + G +HE CF+C +C Q
Sbjct: 98 SSKCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQ 134
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 67 LASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQC 103
L + TCE C ++ +HE CF C+QC
Sbjct: 35 LFANTCEECGKPIGCDCKDLSYKDRHWHEACFHCSQC 71
>gi|87159834 four and a half LIM domains 2 [Homo sapiens]
Length = 279
Score = 35.4 bits (80), Expect = 0.010
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 69 SATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQ 105
S+ C+ CK P + G +HE CF+C +C Q
Sbjct: 98 SSKCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQ 134
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 67 LASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQC 103
L + TCE C ++ +HE CF C+QC
Sbjct: 35 LFANTCEECGKPIGCDCKDLSYKDRHWHEACFHCSQC 71
>gi|42403575 four and a half LIM domains 2 [Homo sapiens]
Length = 279
Score = 35.4 bits (80), Expect = 0.010
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 69 SATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQ 105
S+ C+ CK P + G +HE CF+C +C Q
Sbjct: 98 SSKCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQ 134
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 67 LASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQC 103
L + TCE C ++ +HE CF C+QC
Sbjct: 35 LFANTCEECGKPIGCDCKDLSYKDRHWHEACFHCSQC 71
>gi|87159832 four and a half LIM domains 2 [Homo sapiens]
Length = 279
Score = 35.4 bits (80), Expect = 0.010
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 69 SATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQ 105
S+ C+ CK P + G +HE CF+C +C Q
Sbjct: 98 SSKCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQ 134
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 67 LASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQC 103
L + TCE C ++ +HE CF C+QC
Sbjct: 35 LFANTCEECGKPIGCDCKDLSYKDRHWHEACFHCSQC 71
>gi|7662330 actin binding LIM protein family, member 3 [Homo
sapiens]
Length = 683
Score = 35.4 bits (80), Expect = 0.010
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 67 LASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEG 110
L C+ C+ F E ++++ G YH +CFVC+ C + FP G
Sbjct: 77 LYGTRCDSCRD-FITGE-VISALGRTYHPKCFVCSLCRKPFPIG 118
Score = 33.9 bits (76), Expect = 0.028
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 56 DFYAKFNMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPEG 110
D++A+F + TC+R G ++ + G+ YH C C +C Q F EG
Sbjct: 201 DYHAQFG----IKCETCDRYISG-----RVLEAGGKHYHPTCARCVRCHQMFTEG 246
>gi|11641283 LIM homeobox protein 5 [Homo sapiens]
Length = 402
Score = 35.4 bits (80), Expect = 0.010
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 52 KEFC--DFYAKFNMANALASATCERCKGGFAPAETIVNSNGELYHEQCFVCAQCFQQFPE 109
K +C DF+ +F C C G +P++ + + +++H CF C C +Q
Sbjct: 49 KLYCKNDFFRRFG-------TKCAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLST 101
Query: 110 G 110
G
Sbjct: 102 G 102
>gi|7657309 LIM and cysteine-rich domains 1 [Homo sapiens]
Length = 365
Score = 35.4 bits (80), Expect = 0.010
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 72 CERCKGGFAPAETIVNSNGELYHEQ----CFVCAQCFQQFPEGLFY 113
CE CKG P +V S+ Y++Q CFVCA+C + + +++
Sbjct: 243 CELCKGAAPPDSPVVYSDRAGYNKQWHPTCFVCAKCSEPLVDLIYF 288
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,644,353
Number of Sequences: 37866
Number of extensions: 179110
Number of successful extensions: 1250
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 928
Number of HSP's gapped (non-prelim): 394
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.