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Search of human proteins with 157278100
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157278100 phosphonoformate immuno-associated protein 5
isoform 1 [Homo sapiens]
(752 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157278100 phosphonoformate immuno-associated protein 5 isofor... 1542 0.0
gi|7656971 phosphonoformate immuno-associated protein 5 isoform ... 221 1e-57
gi|31742492 Nedd4 binding protein 2 [Homo sapiens] 112 2e-24
gi|119226224 NEDD4 binding protein 2-like 1 isoform 1 [Homo sapi... 102 1e-21
gi|119226227 NEDD4 binding protein 2-like 1 isoform 2 [Homo sapi... 45 3e-04
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 40 0.006
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 37 0.052
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 37 0.067
gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo sap... 37 0.088
gi|7019419 guanine nucleotide binding protein-like 2 (nucleolar)... 36 0.15
gi|194306559 kinesin light chain 1 isoform 3 [Homo sapiens] 36 0.15
gi|110735431 kinesin light chain 1 isoform 2 [Homo sapiens] 36 0.15
gi|33620730 kinesin light chain 1 isoform 1 [Homo sapiens] 36 0.15
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 35 0.20
gi|212276104 leucine rich repeat (in FLII) interacting protein 1... 35 0.20
gi|212276096 leucine rich repeat (in FLII) interacting protein 1... 35 0.20
gi|212276070 leucine rich repeat (in FLII) interacting protein 1... 35 0.20
gi|47419936 SFRS protein kinase 1 [Homo sapiens] 35 0.20
gi|153791492 eukaryotic translation initiation factor 3, subunit... 35 0.26
gi|83700233 eukaryotic translation initiation factor 3, subunit ... 35 0.26
gi|4503525 eukaryotic translation initiation factor 3, subunit C... 35 0.26
gi|21361684 G patch domain containing 1 [Homo sapiens] 35 0.33
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 34 0.44
gi|94721261 2',3'-cyclic nucleotide 3' phosphodiesterase [Homo s... 34 0.57
gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens] 34 0.57
gi|146134388 YLP motif containing 1 [Homo sapiens] 34 0.57
gi|55749531 splicing factor 3B subunit 2 [Homo sapiens] 34 0.57
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 33 0.75
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ... 33 0.75
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 33 0.75
>gi|157278100 phosphonoformate immuno-associated protein 5 isoform 1
[Homo sapiens]
Length = 752
Score = 1542 bits (3992), Expect = 0.0
Identities = 752/752 (100%), Positives = 752/752 (100%)
Query: 1 MSYGEIEEFCLVRIVMALCSALMTIFTIKMGTAKQAIDQGRSPVIIDNTNIQAWEMKPYV 60
MSYGEIEEFCLVRIVMALCSALMTIFTIKMGTAKQAIDQGRSPVIIDNTNIQAWEMKPYV
Sbjct: 1 MSYGEIEEFCLVRIVMALCSALMTIFTIKMGTAKQAIDQGRSPVIIDNTNIQAWEMKPYV 60
Query: 61 EVAIGKGYRVEFHEPETWWKFDPEELEKRNKHGVSRKKIAQMLDRYEYQMSISIVMNSVE 120
EVAIGKGYRVEFHEPETWWKFDPEELEKRNKHGVSRKKIAQMLDRYEYQMSISIVMNSVE
Sbjct: 61 EVAIGKGYRVEFHEPETWWKFDPEELEKRNKHGVSRKKIAQMLDRYEYQMSISIVMNSVE 120
Query: 121 PSHKSTQRPPPPQGRQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLSD 180
PSHKSTQRPPPPQGRQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLSD
Sbjct: 121 PSHKSTQRPPPPQGRQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLSD 180
Query: 181 LTPGDQDPSQSEEEDIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPKDSFQNVM 240
LTPGDQDPSQSEEEDIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPKDSFQNVM
Sbjct: 181 LTPGDQDPSQSEEEDIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPKDSFQNVM 240
Query: 241 SIVELDNTPKNYLSKEGDNLFVSLLLRPNEISVTCPILTQNLSCVTTDDCSGMKVEKHIR 300
SIVELDNTPKNYLSKEGDNLFVSLLLRPNEISVTCPILTQNLSCVTTDDCSGMKVEKHIR
Sbjct: 241 SIVELDNTPKNYLSKEGDNLFVSLLLRPNEISVTCPILTQNLSCVTTDDCSGMKVEKHIR 300
Query: 301 NRHTIALDTQDLSAETSCLFMKKREIVDKNLSHEPILCHQHGIRMSDKVLREEQVYTTKI 360
NRHTIALDTQDLSAETSCLFMKKREIVDKNLSHEPILCHQHGIRMSDKVLREEQVYTTKI
Sbjct: 301 NRHTIALDTQDLSAETSCLFMKKREIVDKNLSHEPILCHQHGIRMSDKVLREEQVYTTKI 360
Query: 361 NHWAFFTTNLSDEDLQLGSDRQPYFGSWPAGPHKFICEQRPKKDRACKLAGPDSRGQWIQ 420
NHWAFFTTNLSDEDLQLGSDRQPYFGSWPAGPHKFICEQRPKKDRACKLAGPDSRGQWIQ
Sbjct: 361 NHWAFFTTNLSDEDLQLGSDRQPYFGSWPAGPHKFICEQRPKKDRACKLAGPDSRGQWIQ 420
Query: 421 MIFTSVAASEPGNNPEILTDKLLIGNEDFSPPPETMDSFIETNLFRSCLPQPDIPKNALE 480
MIFTSVAASEPGNNPEILTDKLLIGNEDFSPPPETMDSFIETNLFRSCLPQPDIPKNALE
Sbjct: 421 MIFTSVAASEPGNNPEILTDKLLIGNEDFSPPPETMDSFIETNLFRSCLPQPDIPKNALE 480
Query: 481 STKNKKRRKKRIFNLVPNFDLLGQSRIGVKEREKCDLLTKNHGLKITLGEEKDRISERNS 540
STKNKKRRKKRIFNLVPNFDLLGQSRIGVKEREKCDLLTKNHGLKITLGEEKDRISERNS
Sbjct: 481 STKNKKRRKKRIFNLVPNFDLLGQSRIGVKEREKCDLLTKNHGLKITLGEEKDRISERNS 540
Query: 541 EEENKQKLMTFDHHPLWFYLDIIKATPLNIDGQRYSHCLSFNRLRCSASLYKNYIPSFVL 600
EEENKQKLMTFDHHPLWFYLDIIKATPLNIDGQRYSHCLSFNRLRCSASLYKNYIPSFVL
Sbjct: 541 EEENKQKLMTFDHHPLWFYLDIIKATPLNIDGQRYSHCLSFNRLRCSASLYKNYIPSFVL 600
Query: 601 HNLSSIWKPSFTNKKLFLTFESQTRVGNKLNDAGFISPEILHSHPDTSCSLGVTSDFHFL 660
HNLSSIWKPSFTNKKLFLTFESQTRVGNKLNDAGFISPEILHSHPDTSCSLGVTSDFHFL
Sbjct: 601 HNLSSIWKPSFTNKKLFLTFESQTRVGNKLNDAGFISPEILHSHPDTSCSLGVTSDFHFL 660
Query: 661 NERFDRKLKRWEEPKELPAEDSQDLTSTDYRSLELPLSQGFAFQLVKLFGSPGVPMESLL 720
NERFDRKLKRWEEPKELPAEDSQDLTSTDYRSLELPLSQGFAFQLVKLFGSPGVPMESLL
Sbjct: 661 NERFDRKLKRWEEPKELPAEDSQDLTSTDYRSLELPLSQGFAFQLVKLFGSPGVPMESLL 720
Query: 721 PDDYVVPLDWKTLKMIYLQWKMSVEKRQKKIG 752
PDDYVVPLDWKTLKMIYLQWKMSVEKRQKKIG
Sbjct: 721 PDDYVVPLDWKTLKMIYLQWKMSVEKRQKKIG 752
>gi|7656971 phosphonoformate immuno-associated protein 5 isoform 2
[Homo sapiens]
Length = 583
Score = 221 bits (564), Expect = 1e-57
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 33 AKQAIDQGRSPVIIDNTNIQAWEMKPYVEVAIGKGYRVEFHEPETWWKFDPEELEKRNKH 92
AKQAIDQGRSPVIIDNTNIQAWEMKPYVEVAIGKGYRVEFHEPETWWKFDPEELEKRNKH
Sbjct: 462 AKQAIDQGRSPVIIDNTNIQAWEMKPYVEVAIGKGYRVEFHEPETWWKFDPEELEKRNKH 521
Query: 93 GVSRKKIAQMLDRYEYQMSISIVMNSVEPSHKSTQRPPPPQGRQR 137
GVSRKKIAQMLDRYEYQMSISIVMNSVEPSHKSTQRPPPPQGRQR
Sbjct: 522 GVSRKKIAQMLDRYEYQMSISIVMNSVEPSHKSTQRPPPPQGRQR 566
>gi|31742492 Nedd4 binding protein 2 [Homo sapiens]
Length = 1770
Score = 112 bits (279), Expect = 2e-24
Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 23/227 (10%)
Query: 33 AKQAIDQGRSPVIIDNTNIQAWEMKPYVEVAIGKGYRVEFHEPETWWKFDPEELEKRNKH 92
AK+A ++ SP+IIDNTN+QAWEMKPYV ++ Y+V F EP+TWWKF P+EL +RN H
Sbjct: 500 AKEAFEKKISPIIIDNTNLQAWEMKPYVALSQKHKYKVLFREPDTWWKFKPKELARRNIH 559
Query: 93 GVSRKKIAQMLDRYEYQMSISIVMNSVEP---------SHKSTQRPPPPQ------GRQR 137
GVS++KI +ML+ Y+ +S+ I+M+S P ++ R P+ +
Sbjct: 560 GVSKEKITRMLEHYQRFVSVPIIMSSSVPEKIERIELCAYSCEDRSTSPRDDEDIISEKE 619
Query: 138 ERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENS-----LEFLSDLTPGDQDPSQSE 192
E +L + L T++K + +N N+ + +SD+ P Q E
Sbjct: 620 ENILSLSLKHLEFTEEKNLDVTKETMLPENVAYLSNADLNKRRKEISDMNPSIQSALILE 679
Query: 193 EEDIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPKDSFQNV 239
+ + ES+ D +NE + V K + D S + V
Sbjct: 680 TPHMYFSDSESKLQATDKSENEQIEMVA---VKGYSKTDTDSSMERV 723
Score = 47.8 bits (112), Expect = 4e-05
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 693 LELPLSQGFAFQLVKLFGSPGVPMESLLPDDYVVPLDWKTLKMIYLQWKMSVEKRQKK 750
LEL L AFQL +LFG G+ SL +D VV +D K+I+ +WK SV +RQ++
Sbjct: 1376 LELALPPELAFQLNELFGPVGIDSGSLTVEDCVVHIDLNLAKVIHEKWKESVMERQRQ 1433
>gi|119226224 NEDD4 binding protein 2-like 1 isoform 1 [Homo
sapiens]
Length = 243
Score = 102 bits (255), Expect = 1e-21
Identities = 46/90 (51%), Positives = 67/90 (74%)
Query: 33 AKQAIDQGRSPVIIDNTNIQAWEMKPYVEVAIGKGYRVEFHEPETWWKFDPEELEKRNKH 92
A++A+ G SP+IIDNTN+ AWEMKPY +A+ Y V F EP+T WKF+ +EL +RN H
Sbjct: 103 ARKAMRNGISPIIIDNTNLHAWEMKPYAVMALENNYEVIFREPDTRWKFNVQELARRNIH 162
Query: 93 GVSRKKIAQMLDRYEYQMSISIVMNSVEPS 122
GVSR+KI +M +RYE+ ++ V+++ +PS
Sbjct: 163 GVSREKIHRMKERYEHDVTFHSVLHAEKPS 192
>gi|119226227 NEDD4 binding protein 2-like 1 isoform 2 [Homo
sapiens]
Length = 173
Score = 44.7 bits (104), Expect = 3e-04
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 33 AKQAIDQGRSPVIIDNTNIQAWEMKPY 59
A++A+ G SP+IIDNTN+ AWEMKPY
Sbjct: 103 ARKAMRNGISPIIIDNTNLHAWEMKPY 129
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 40.4 bits (93), Expect = 0.006
Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 25/159 (15%)
Query: 79 WKFDP--EELEKRNKHGVSRKKIAQMLDRYEYQMSISIVMNSVEPSHKSTQRPP--PPQG 134
W D +E+ ++ K G + M + Y S S+ + EP HK + P
Sbjct: 464 WTMDASIDEVVRKAKLGTP----SNMPPNFPYISSPSVSPPTPEPLHKVYEEKTKLPSSV 519
Query: 135 RQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLSDLTPGDQDPSQSEEE 194
++++ K+ ++ K +++R+R+R K +N ++D + +E+
Sbjct: 520 EVKKKLKKELKTKMKKKEKQRDREREKDKNKDKS---------------KEKDKVKEKEK 564
Query: 195 DIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPK 233
D E T RE++YP+ + L+ E D +K K +++ DPK
Sbjct: 565 DKE-TGRETKYPWKEFLKEEEAD-PYKFKIKEFEDVDPK 601
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 37.4 bits (85), Expect = 0.052
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 100 AQMLDRYEYQMSIS--IVMNSVEPSHKST-QRPPPPQGRQRERVLKKTGHRLSKTKQKRN 156
A++LD ++ + ++ V+ +++S Q+ +G QRER + HR ++ Q++
Sbjct: 193 ARILDEEVFEGDVQELAIVPGVQAAYESCEQKELECEGGQRERPQNQQPHRAQRSPQQQP 252
Query: 157 RKRNKKQNSQNRIMEENSLEF----------LSDLTPGDQDPSQSEEEDI 196
+ ++ QN + + SL + + TP QDP+ EEE+I
Sbjct: 253 SRLHRPQNQEPQSQPTESLYYDYEPPYYDVMTTGTTPDYQDPTPGEEEEI 302
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 37.0 bits (84), Expect = 0.067
Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 30/190 (15%)
Query: 120 EPSHKSTQRPPPPQGRQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLS 179
+ S S+ GR+ K+T R SK K K + + +K+N +++ + ++ E S
Sbjct: 715 DSSEDSSSEQDSESGRESGLENKRTAKRNSKAKGKSDSEDGEKENEKSKTSDSSNDESSS 774
Query: 180 DLTPGDQDPSQSEEEDIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPKDSFQNV 239
S+SE E ++RR + KEK K K +
Sbjct: 775 IEDSSSDSESESEPESESESRRVT-------------------KEKEKKTKQDRTPLTKD 815
Query: 240 MSIVELDN-----------TPKNYLSKEGDNLFVSLLLRPNEISVTCPILTQNLSCVTTD 288
+S+++LD+ TP S D + L + ISV+ P + V
Sbjct: 816 VSLLDLDDFNPVSTPVALPTPALSPSLMADLEGLHLSTSSSVISVSTPAFVPTKTHVLLH 875
Query: 289 DCSGMKVEKH 298
SG + H
Sbjct: 876 RMSGKGLAAH 885
>gi|14149807 coiled-coil domain containing 55 isoform 1 [Homo
sapiens]
Length = 558
Score = 36.6 bits (83), Expect = 0.088
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 123 HKSTQRPPPPQGRQR-ERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLSDL 181
H+ +P R+R +RV K+ R + +R ++R+++QN QNR E+ E
Sbjct: 359 HEQEDKPRARDQRERSDRVWKREKDR--EKYSQREQERDRQQNDQNRPSEKGEKE----- 411
Query: 182 TPGDQDPSQSEEEDIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPKDSFQN 238
++ ++ E + K R E+ + D + EVG + +N+D K+S N
Sbjct: 412 ---EKSKAKEEHMKVRKERYENNDKYRDREKREVG------VQSSERNQDRKESSPN 459
>gi|7019419 guanine nucleotide binding protein-like 2 (nucleolar)
[Homo sapiens]
Length = 731
Score = 35.8 bits (81), Expect = 0.15
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 12/122 (9%)
Query: 57 KPYVEVAIGKGYRVE-FHEPETWWKFDPEELEKRNKHGVSRKKIAQMLDRYEYQMSISIV 115
K + V I KG + F +PE K E+++ R +K+ AQ + E+
Sbjct: 617 KKFSAVRISKGLSEKIFAKPEEQRKTLEEDVDDRAPSKKGKKRKAQREEEQEHSNKAPRA 676
Query: 116 MNSVEPSHKSTQRPPPPQGRQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSL 175
+ S E Q+ P KK G R +T +NR RNKK+ + + +
Sbjct: 677 LTSKERRRAVRQQRP-----------KKVGVRYYETHNVKNRNRNKKKTNDSEGQKHKRK 725
Query: 176 EF 177
+F
Sbjct: 726 KF 727
>gi|194306559 kinesin light chain 1 isoform 3 [Homo sapiens]
Length = 618
Score = 35.8 bits (81), Expect = 0.15
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 80 KFDPEELEKRNKHGVSRKKIAQM---LDRYEYQMSISIVMNSVEPSHKSTQRPPPPQGRQ 136
K D E K + RK + + L + M++S +N+VE S K R + Q
Sbjct: 57 KKDDESNLVEEKSNMIRKSLEMLELGLSEAQVMMALSNHLNAVE-SEKQKLRAQVRRLCQ 115
Query: 137 RERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENS-LEFLSDLTPGDQDPSQSEEED 195
+ L+ L+ T+QK K + S ++ EE LEF++ L D D S SE++D
Sbjct: 116 ENQWLRD---ELANTQQKLQ----KSEQSVAQLEEEKKHLEFMNQLKKYDDDISPSEDKD 168
Query: 196 IEKTRRESEYPFIDGLQNEVGDFVTGYKEK 225
+ T+ P D N+ D G +++
Sbjct: 169 TDSTKE----PLDDLFPNDEDDPGQGIQQQ 194
>gi|110735431 kinesin light chain 1 isoform 2 [Homo sapiens]
Length = 573
Score = 35.8 bits (81), Expect = 0.15
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 80 KFDPEELEKRNKHGVSRKKIAQM---LDRYEYQMSISIVMNSVEPSHKSTQRPPPPQGRQ 136
K D E K + RK + + L + M++S +N+VE S K R + Q
Sbjct: 57 KKDDESNLVEEKSNMIRKSLEMLELGLSEAQVMMALSNHLNAVE-SEKQKLRAQVRRLCQ 115
Query: 137 RERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENS-LEFLSDLTPGDQDPSQSEEED 195
+ L+ L+ T+QK K + S ++ EE LEF++ L D D S SE++D
Sbjct: 116 ENQWLRD---ELANTQQKLQ----KSEQSVAQLEEEKKHLEFMNQLKKYDDDISPSEDKD 168
Query: 196 IEKTRRESEYPFIDGLQNEVGDFVTGYKEK 225
+ T+ P D N+ D G +++
Sbjct: 169 TDSTKE----PLDDLFPNDEDDPGQGIQQQ 194
>gi|33620730 kinesin light chain 1 isoform 1 [Homo sapiens]
Length = 560
Score = 35.8 bits (81), Expect = 0.15
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 80 KFDPEELEKRNKHGVSRKKIAQM---LDRYEYQMSISIVMNSVEPSHKSTQRPPPPQGRQ 136
K D E K + RK + + L + M++S +N+VE S K R + Q
Sbjct: 57 KKDDESNLVEEKSNMIRKSLEMLELGLSEAQVMMALSNHLNAVE-SEKQKLRAQVRRLCQ 115
Query: 137 RERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENS-LEFLSDLTPGDQDPSQSEEED 195
+ L+ L+ T+QK K + S ++ EE LEF++ L D D S SE++D
Sbjct: 116 ENQWLRD---ELANTQQKLQ----KSEQSVAQLEEEKKHLEFMNQLKKYDDDISPSEDKD 168
Query: 196 IEKTRRESEYPFIDGLQNEVGDFVTGYKEK 225
+ T+ P D N+ D G +++
Sbjct: 169 TDSTKE----PLDDLFPNDEDDPGQGIQQQ 194
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 35.4 bits (80), Expect = 0.20
Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 10/141 (7%)
Query: 69 RVEFHEPETWWKFDPEE-LEKRNKHGVSRKKIAQMLDRYEYQMSISIVMNSVEPSHKSTQ 127
R FH P T W + + EK+ S ++ R S N K ++
Sbjct: 791 RSRFHSPSTTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPK---NESARGRKKSR 847
Query: 128 RPPPPQGRQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEEN--SLEFLSDLTPGD 185
P + RER +++ R K R +R++ + + EN S + D +PG+
Sbjct: 848 SQSPKKDIARER--RQSQSRSPKRDTTRESRRSESLSPRRETSRENKRSQPRVKDSSPGE 905
Query: 186 QDPSQSEEEDIEK--TRRESE 204
+ SQS E + ++ RRE E
Sbjct: 906 KSRSQSRERESDRDGQRRERE 926
>gi|212276104 leucine rich repeat (in FLII) interacting protein 1
isoform 5 [Homo sapiens]
Length = 752
Score = 35.4 bits (80), Expect = 0.20
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 21/145 (14%)
Query: 121 PSHKSTQRPPPPQGRQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLSD 180
PS TQ P E + G L +++K K+ K + ++ + E + +
Sbjct: 479 PSTVDTQNEPLDMKEPDEEKSDQQGEALDSSQKKTKNKKKKNKKKKSPVPVETLKDVKKE 538
Query: 181 LTPGDQDPSQ-SEEEDIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPKDSFQNV 239
LT + D S+ EEE ++ T R+S QNEV + K K +S +N
Sbjct: 539 LTYQNTDLSEIKEEEQVKSTDRKSAVE----AQNEV--------TENPKQKIAAESSEN- 585
Query: 240 MSIVELDNTPK----NYLSKEGDNL 260
V+ PK L +EGD++
Sbjct: 586 ---VDCPENPKIKLDGKLDQEGDDV 607
>gi|212276096 leucine rich repeat (in FLII) interacting protein 1
isoform 3 [Homo sapiens]
Length = 808
Score = 35.4 bits (80), Expect = 0.20
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 21/145 (14%)
Query: 121 PSHKSTQRPPPPQGRQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLSD 180
PS TQ P E + G L +++K K+ K + ++ + E + +
Sbjct: 535 PSTVDTQNEPLDMKEPDEEKSDQQGEALDSSQKKTKNKKKKNKKKKSPVPVETLKDVKKE 594
Query: 181 LTPGDQDPSQ-SEEEDIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPKDSFQNV 239
LT + D S+ EEE ++ T R+S QNEV + K K +S +N
Sbjct: 595 LTYQNTDLSEIKEEEQVKSTDRKSAVE----AQNEV--------TENPKQKIAAESSEN- 641
Query: 240 MSIVELDNTPK----NYLSKEGDNL 260
V+ PK L +EGD++
Sbjct: 642 ---VDCPENPKIKLDGKLDQEGDDV 663
>gi|212276070 leucine rich repeat (in FLII) interacting protein 1
isoform 4 [Homo sapiens]
Length = 784
Score = 35.4 bits (80), Expect = 0.20
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 21/145 (14%)
Query: 121 PSHKSTQRPPPPQGRQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLSD 180
PS TQ P E + G L +++K K+ K + ++ + E + +
Sbjct: 511 PSTVDTQNEPLDMKEPDEEKSDQQGEALDSSQKKTKNKKKKNKKKKSPVPVETLKDVKKE 570
Query: 181 LTPGDQDPSQ-SEEEDIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPKDSFQNV 239
LT + D S+ EEE ++ T R+S QNEV + K K +S +N
Sbjct: 571 LTYQNTDLSEIKEEEQVKSTDRKSAVE----AQNEV--------TENPKQKIAAESSEN- 617
Query: 240 MSIVELDNTPK----NYLSKEGDNL 260
V+ PK L +EGD++
Sbjct: 618 ---VDCPENPKIKLDGKLDQEGDDV 639
>gi|47419936 SFRS protein kinase 1 [Homo sapiens]
Length = 655
Score = 35.4 bits (80), Expect = 0.20
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 130 PPPQGRQRERVLK-KTGHRLSKTKQKRNRKRNKKQNS--QNRIMEENSLEFLSDLTPGDQ 186
PPP G + K ++SK K+K+ +K+ K+Q + R+ E +E + PG +
Sbjct: 244 PPPSGSAVSTAPQPKPADKMSKNKKKKLKKKQKRQAELLEKRMQEIEEME--KESGPGQK 301
Query: 187 DPSQSEEEDIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPKDSFQ--NVMSIVE 244
P++ EE + R E P Q ++ + T +++ +D + N ++E
Sbjct: 302 RPNKQEESESPVERPLKENPPNKMTQEKLEESSTIGQDQTLMERDTEGGAAEINCNGVIE 361
Query: 245 LDNTPKN 251
+ N +N
Sbjct: 362 VINYTQN 368
>gi|153791492 eukaryotic translation initiation factor 3, subunit
C-like [Homo sapiens]
Length = 914
Score = 35.0 bits (79), Expect = 0.26
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 152 KQKRNRKRNKKQNSQNRIMEENSLEFLSDLTPGDQDPSQSEEEDIEKTRRESE 204
K+K N+ K ++ + + + + +F S +T Q+P QS +ED EK +SE
Sbjct: 127 KKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSE 179
>gi|83700233 eukaryotic translation initiation factor 3, subunit C
[Homo sapiens]
Length = 913
Score = 35.0 bits (79), Expect = 0.26
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 152 KQKRNRKRNKKQNSQNRIMEENSLEFLSDLTPGDQDPSQSEEEDIEKTRRESE 204
K+K N+ K ++ + + + + +F S +T Q+P QS +ED EK +SE
Sbjct: 127 KKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSE 179
>gi|4503525 eukaryotic translation initiation factor 3, subunit C
[Homo sapiens]
Length = 913
Score = 35.0 bits (79), Expect = 0.26
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 152 KQKRNRKRNKKQNSQNRIMEENSLEFLSDLTPGDQDPSQSEEEDIEKTRRESE 204
K+K N+ K ++ + + + + +F S +T Q+P QS +ED EK +SE
Sbjct: 127 KKKMNKNNAKALSTLRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSE 179
>gi|21361684 G patch domain containing 1 [Homo sapiens]
Length = 931
Score = 34.7 bits (78), Expect = 0.33
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 121 PSHKSTQRPPPPQG--RQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFL 178
P+ + T P + + +++ K HR K K+K++RK K +N+ E++S
Sbjct: 840 PNARQTLEVPQKEKHKKNKDKHKAKKEHRRKKEKKKKHRKHKHKGKQKNKKPEKSSSSES 899
Query: 179 SDLTPGDQDPSQSEEEDIEKTRRESEYP 206
SD + D ++ E RR P
Sbjct: 900 SDSSDSQSDEETADVSPQELLRRLKSLP 927
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.3 bits (77), Expect = 0.44
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Query: 131 PPQGRQRERVLKKTGHRLSKTKQKRNR------KRNKKQNSQNRIMEENSLEFLSDLTPG 184
P +GR R R L + G S+T Q+R R ++NK + SQ R +S E
Sbjct: 697 PRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISS 756
Query: 185 DQDPSQSEEEDIEKTR 200
+ S S K+R
Sbjct: 757 RRSRSLSSPRSKAKSR 772
>gi|94721261 2',3'-cyclic nucleotide 3' phosphodiesterase [Homo
sapiens]
Length = 421
Score = 33.9 bits (76), Expect = 0.57
Identities = 15/59 (25%), Positives = 35/59 (59%)
Query: 44 VIIDNTNIQAWEMKPYVEVAIGKGYRVEFHEPETWWKFDPEELEKRNKHGVSRKKIAQM 102
+++D+TN + ++ E+A Y+V EP+T W+ D +L+++N+ +S + ++
Sbjct: 119 LVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNQWQLSADDLKKL 177
>gi|30581135 structural maintenance of chromosomes 1A [Homo sapiens]
Length = 1233
Score = 33.9 bits (76), Expect = 0.57
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 85 ELEKRNKHGVSRKKIAQMLDRYEYQMSISIVMNSVEPSHKSTQRPPPPQGRQRERVLKKT 144
E+EK NK S+ K + + M+ VE K ++ R+++++ K+
Sbjct: 234 EIEKLNKELASKNKEIEKDKKR---------MDKVEDELKEKKKELGKMMREQQQIEKEI 284
Query: 145 GHRLSKTKQKRNRKRNKKQNSQNRIME-ENSLEFLSDL------TPGDQDPSQSEEEDIE 197
+ S+ QKR + K+N+ ++I + E + + L + GD D + E +E
Sbjct: 285 KEKDSELNQKRPQYIKAKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMDELEKEMLSVE 344
Query: 198 KTRRESE 204
K R+E E
Sbjct: 345 KARQEFE 351
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 33.9 bits (76), Expect = 0.57
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 24 TIFTIKMGTAKQAIDQGRSP-VIIDNTNIQAWEMKPYVEVAIGKGYRVEFHEPETWWKFD 82
T T T K+ +D G P +I+D N + + A KG+ V E D
Sbjct: 1908 TYRTSMFKTFKKTLDDGFFPFIILDAINDRVRHFDQFWSAAKTKGFEVYLAEMSA----D 1963
Query: 83 PEELEKRNKHGVSRKKIAQMLDRYE 107
+ KRN HG K+I +M D +E
Sbjct: 1964 NQTCGKRNIHGRKLKEINKMADHWE 1988
>gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]
Length = 895
Score = 33.9 bits (76), Expect = 0.57
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 129 PPPPQGRQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLSDLTPGDQDP 188
PPPP RE G ++ + +K + + +Q N EE +E + + G Q
Sbjct: 250 PPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDARSSLG-QSA 308
Query: 189 SQSEEEDIEKTRRE 202
S++EE+ + +++E
Sbjct: 309 SETEEDTVSVSKKE 322
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 33.5 bits (75), Expect = 0.75
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 19/122 (15%)
Query: 135 RQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLSDLTPGDQDPSQSEEE 194
+Q++++L+K RL K K+K++RK+ K Q S+++ + S S + SE
Sbjct: 219 KQKQKLLRKLD-RLEKKKKKKDRKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESS 277
Query: 195 DIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPKDSFQNVMSIVELDNTPKNYLS 254
++ + + K +R K K K S N E D + K L
Sbjct: 278 SESESNNKEK------------------KIQRKKRKKNKCSGHNNSDSEEKDKSKKRKLH 319
Query: 255 KE 256
+E
Sbjct: 320 EE 321
>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B [Homo sapiens]
Length = 546
Score = 33.5 bits (75), Expect = 0.75
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 133 QGRQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLSDLTPGDQDPSQSE 192
+GR+R+R K + +++R+R+R+K+Q S+ + E+ E D D +
Sbjct: 362 RGRRRDRDYDKERGNEREKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRDDKRDSKK 421
Query: 193 EEDIEKTR-RESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPKDSFQNVMS 241
E+ ++R RE ++ +N + KEK K+K+ N S
Sbjct: 422 EKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRS 471
Score = 31.2 bits (69), Expect = 3.7
Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 7/134 (5%)
Query: 124 KSTQRPPPPQGRQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEFLSDLTP 183
K + R R R K S+ KR+R R+K+++S+++ + S
Sbjct: 416 KRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRS---- 471
Query: 184 GDQDPSQSEEEDIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKDPKDSFQNVMS-I 242
+ SQ + +EK+++ P + + +K +KD D S
Sbjct: 472 --RSGSQGRTDSVEKSKKREHSPSKEKSRKRSRSKERSHKRDHSDSKDQSDKHDRRRSQS 529
Query: 243 VELDNTPKNYLSKE 256
+E ++ K + +K+
Sbjct: 530 IEQESQEKQHKNKD 543
Score = 30.0 bits (66), Expect = 8.2
Identities = 24/114 (21%), Positives = 47/114 (41%)
Query: 118 SVEPSHKSTQRPPPPQGRQRERVLKKTGHRLSKTKQKRNRKRNKKQNSQNRIMEENSLEF 177
S E H+S R R R R +K+ +++K+K N++ + +E++
Sbjct: 430 SRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKRE 489
Query: 178 LSDLTPGDQDPSQSEEEDIEKTRRESEYPFIDGLQNEVGDFVTGYKEKRWKNKD 231
S + S+S+E ++ +S+ + +EK+ KNKD
Sbjct: 490 HSPSKEKSRKRSRSKERSHKRDHSDSKDQSDKHDRRRSQSIEQESQEKQHKNKD 543
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 33.5 bits (75), Expect = 0.75
Identities = 32/161 (19%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 87 EKRNKHGVSRKKIAQMLDRYEYQMSISIVMNSVEPSHKSTQRPPPPQGRQRERVLKKTGH 146
+KR+K G R+ ++ DR + S K +R R RER +
Sbjct: 29 DKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRLRR-----SRSRERDRSRERR 83
Query: 147 RLSKTKQKRNRKRNKKQNSQNRI------MEENSLEFLSDLTPGDQDPSQSEEEDIEKTR 200
R ++R+R R++ + S++ EN G+ + +++D ++
Sbjct: 84 RSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDGGESSKEKKKDKDDKEDE 143
Query: 201 RESEYPFIDGLQNEVGDFVTGYKEK--RWKNKDPKDSFQNV 239
+E + D QN++ + + KE+ +W+ + K + +N+
Sbjct: 144 KEKDAGNFD--QNKLEEEMRKRKERVEKWREEQRKKAMENI 182
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,346,240
Number of Sequences: 37866
Number of extensions: 1504999
Number of successful extensions: 6106
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 5826
Number of HSP's gapped (non-prelim): 344
length of query: 752
length of database: 18,247,518
effective HSP length: 110
effective length of query: 642
effective length of database: 14,082,258
effective search space: 9040809636
effective search space used: 9040809636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.