Guide to the Human Genome
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Name: C21orf59 Sequence: fasta or formatted (290aa) NCBI GI: 11037061
Description:

hypothetical protein LOC56683

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         21           2
 C cysteine            1.0          3           1
 D aspartate           5.5         16           3
 E glutamate          10.7         31           2
 F phenylalanine       1.7          5           1
 G glycine             6.6         19           2
 H histidine           1.7          5           1
 I isoleucine          5.2         15           2
 K lysine             10.0         29           2
 L leucine             9.7         28           2
 M methionine          3.4         10           1
 N asparagine          3.4         10           1
 P proline             4.5         13           2
 Q glutamine           6.2         18           2
 R arginine            6.2         18           2
 S serine              3.4         10           2
 T threonine           3.1          9           1
 V valine              6.2         18           1
 W tryptophan          1.7          5           2
 Y tyrosine            2.4          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC56683 
TRIP11                0.021   thyroid hormone receptor interactor 11 
SH2D4B                0.020   SH2 domain containing 4B isoform 2 
SH2D4B                0.020   SH2 domain containing 4B isoform 1 
LOC643802             0.016   PREDICTED: similar to M-phase phosphoprotein 10 (U3...
MIA3                  0.014   melanoma inhibitory activity family, member 3 [Homo...
RBM19                 0.014   RNA binding motif protein 19 
RBM19                 0.014   RNA binding motif protein 19 
RBM19                 0.014   RNA binding motif protein 19 
LOC643802             0.014   PREDICTED: similar to M-phase phosphoprotein 10 (U3...
LOC643802             0.014   PREDICTED: similar to M-phase phosphoprotein 10 (U3...
MYH7                  0.011   myosin, heavy chain 7, cardiac muscle, beta 
MYO10                 0.011   myosin X 
ANKRD30A              0.009   ankyrin repeat domain 30A 
KIF16B                0.009   kinesin-like motor protein C20orf23 
RNF214                0.009   ring finger protein 214 
RNF214                0.009   ring finger protein 214 
MAN1A1                0.009   mannosidase, alpha, class 1A, member 1 
MPHOSPH10             0.009   M-phase phosphoprotein 10 
TTC6                  0.007   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.007   PREDICTED: tetratricopeptide repeat domain 6 
C14orf25              0.007   PREDICTED: chromosome 14 open reading frame 25 [Hom...
GIGYF2                0.005   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.005   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.005   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.005   GRB10 interacting GYF protein 2 isoform b 
FRMD7                 0.005   FERM domain containing 7 
REV1                  0.005   REV1-like isoform 2 
REV1                  0.005   REV1-like isoform 1 
TACC3                 0.005   transforming, acidic coiled-coil containing protein 3...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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