Guide to the Human Genome
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Name: SH2D4B Sequence: fasta or formatted (357aa) NCBI GI: 224591406
Description:

SH2 domain containing 4B isoform 1

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [309aa] SH2 domain containing 4B isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         30           2
 C cysteine            0.6          2           1
 D aspartate           3.6         13           1
 E glutamate          15.1         54           4
 F phenylalanine       2.5          9           1
 G glycine             4.5         16           2
 H histidine           3.4         12           2
 I isoleucine          3.9         14           1
 K lysine              7.0         25           2
 L leucine             9.5         34           2
 M methionine          1.7          6           1
 N asparagine          0.8          3           1
 P proline             4.5         16           2
 Q glutamine           6.4         23           2
 R arginine           12.3         44           3
 S serine              3.6         13           2
 T threonine           3.1         11           1
 V valine              3.6         13           2
 W tryptophan          3.4         12           1
 Y tyrosine            2.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SH2 domain containing 4B isoform 1 
SH2D4B                0.818   SH2 domain containing 4B isoform 2 
SH2D4A                0.278   SH2 domain containing 4A 
TCHH                  0.067   trichohyalin 
CALD1                 0.064   caldesmon 1 isoform 1 
LOC440243             0.055   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC400352             0.052   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.052   PREDICTED: similar to Putative golgin subfamily A m...
INCENP                0.052   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.052   inner centromere protein antigens 135/155kDa isofor...
LOC727832             0.052   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.051   PREDICTED: hypothetical protein LOC645202 
LOC283767             0.050   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.048   PREDICTED: golgi autoantigen, golgin subfamily a-li...
WDR87                 0.047   NYD-SP11 protein 
LOC100133758          0.047   PREDICTED: hypothetical protein, partial 
TNIK                  0.047   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.047   TRAF2 and NCK interacting kinase isoform 1 
SCAPER                0.045   S-phase cyclin A-associated protein in the ER isofo...
SCAPER                0.045   S-phase cyclin A-associated protein in the ER isofo...
TNIK                  0.044   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.044   TRAF2 and NCK interacting kinase isoform 5 
PLEC1                 0.043   plectin 1 isoform 11 
PLEC1                 0.043   plectin 1 isoform 10 
PLEC1                 0.043   plectin 1 isoform 8 
PLEC1                 0.043   plectin 1 isoform 7 
PLEC1                 0.043   plectin 1 isoform 6 
PLEC1                 0.043   plectin 1 isoform 3 
PLEC1                 0.043   plectin 1 isoform 2 
PLEC1                 0.043   plectin 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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