Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC643802 Sequence: fasta or formatted (213aa) NCBI GI: 169210488
Description:

PREDICTED: similar to M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)

Not currently referenced in the text

Other entries for this name:
alt prot {213aa} PREDICTED: similar to M-phase phosphoprotein 10 (U3 small nucleol...
alt prot {213aa} PREDICTED: similar to M-phase phosphoprotein 10 (U3 small nucleol...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.8          6           1
 C cysteine            1.4          3           1
 D aspartate          11.3         24           2
 E glutamate          16.9         36           4
 F phenylalanine       4.7         10           2
 G glycine             5.2         11           2
 H histidine           0.9          2           1
 I isoleucine          2.3          5           2
 K lysine              9.9         21           3
 L leucine             6.6         14           2
 M methionine          2.3          5           2
 N asparagine          4.2          9           2
 P proline             2.8          6           1
 Q glutamine           4.2          9           2
 R arginine            4.7         10           1
 S serine              8.9         19           2
 T threonine           3.3          7           1
 V valine              4.2          9           1
 W tryptophan          1.9          4           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to M-phase phosphoprotein 10 (U3... 
LOC643802             0.993   PREDICTED: similar to M-phase phosphoprotein 10 (U3...
LOC643802             0.993   PREDICTED: similar to M-phase phosphoprotein 10 (U3...
MPHOSPH10             0.516   M-phase phosphoprotein 10 
LOC400352             0.278   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.278   PREDICTED: similar to Putative golgin subfamily A m...
CHD5                  0.063   chromodomain helicase DNA binding protein 5 
SUPT6H                0.061   suppressor of Ty 6 homolog 
CCAR1                 0.053   cell-cycle and apoptosis regulatory protein 1 
EIF5B                 0.051   eukaryotic translation initiation factor 5B 
HRC                   0.048   histidine rich calcium binding protein precursor [Hom...
CENPB                 0.046   centromere protein B 
HTATSF1               0.046   HIV-1 Tat specific factor 1 
HTATSF1               0.046   HIV-1 Tat specific factor 1 
DAXX                  0.046   death-domain associated protein isoform a 
DAXX                  0.046   death-domain associated protein isoform a 
DAXX                  0.046   death-domain associated protein isoform b 
CHD1                  0.046   chromodomain helicase DNA binding protein 1 
GTF2F1                0.044   general transcription factor IIF, polypeptide 1, 74...
LEO1                  0.044   Leo1, Paf1/RNA polymerase II complex component, homo...
TCEAL5                0.041   transcription elongation factor A (SII)-like 5 [Homo...
MYT1L                 0.041   myelin transcription factor 1-like 
SETD1B                0.041   SET domain containing 1B 
RBM25                 0.041   RNA binding motif protein 25 
CDC2L2                0.041   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.041   cell division cycle 2-like 2 isoform 1 
BOD1L                 0.041   biorientation of chromosomes in cell division 1-like...
CDC2L1                0.041   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.041   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.041   cell division cycle 2-like 1 (PITSLRE proteins) isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press