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Search of human proteins with 156546888
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156546888 F-box protein 40 [Homo sapiens]
(709 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156546888 F-box protein 40 [Homo sapiens] 1461 0.0
gi|34577055 F-box only protein 30 [Homo sapiens] 394 e-109
gi|22027630 TNF receptor-associated factor 6 [Homo sapiens] 37 0.082
gi|4759254 TNF receptor-associated factor 6 [Homo sapiens] 37 0.082
gi|115511012 coiled-coil domain containing 136 [Homo sapiens] 37 0.082
gi|116006951 polycystin 1-like 2 isoform a [Homo sapiens] 35 0.24
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens] 35 0.31
gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b ... 34 0.41
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ... 34 0.41
gi|88759339 aster-associated protein [Homo sapiens] 34 0.41
gi|145275198 ADAMTS-like 3 precursor [Homo sapiens] 34 0.53
gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo ... 34 0.53
gi|21704279 jagged 2 isoform b precursor [Homo sapiens] 33 0.91
gi|21704277 jagged 2 isoform a precursor [Homo sapiens] 33 0.91
gi|118498362 kinectin 1 isoform b [Homo sapiens] 33 1.2
gi|118498356 kinectin 1 isoform a [Homo sapiens] 33 1.2
gi|118498368 kinectin 1 isoform c [Homo sapiens] 33 1.2
gi|33620775 kinectin 1 isoform a [Homo sapiens] 33 1.2
gi|157676334 transmembrane protein 8 (five membrane-spanning dom... 33 1.2
gi|4557679 jagged 1 precursor [Homo sapiens] 32 1.6
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 32 1.6
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 32 1.6
gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Hom... 32 1.6
gi|150170670 piccolo isoform 2 [Homo sapiens] 32 2.0
gi|150378539 piccolo isoform 1 [Homo sapiens] 32 2.0
gi|122937400 odz, odd Oz/ten-m homolog 3 [Homo sapiens] 32 2.0
gi|34577059 adipose differentiation-related protein [Homo sapiens] 31 3.5
gi|13775178 testis expressed 13B [Homo sapiens] 31 4.5
gi|22027622 TNF receptor-associated factor 4 [Homo sapiens] 31 4.5
gi|126032338 ryanodine receptor 3 [Homo sapiens] 31 4.5
>gi|156546888 F-box protein 40 [Homo sapiens]
Length = 709
Score = 1461 bits (3782), Expect = 0.0
Identities = 709/709 (100%), Positives = 709/709 (100%)
Query: 1 MGKARRSPPGHHRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPL 60
MGKARRSPPGHHRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPL
Sbjct: 1 MGKARRSPPGHHRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPL 60
Query: 61 EQVPCLNSEYGCPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKETP 120
EQVPCLNSEYGCPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKETP
Sbjct: 61 EQVPCLNSEYGCPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKETP 120
Query: 121 SEECLDTALALQDQKVLFRSLKMVELFPETREATEEEPTMNGETSVEEMGGAVGGVDIGL 180
SEECLDTALALQDQKVLFRSLKMVELFPETREATEEEPTMNGETSVEEMGGAVGGVDIGL
Sbjct: 121 SEECLDTALALQDQKVLFRSLKMVELFPETREATEEEPTMNGETSVEEMGGAVGGVDIGL 180
Query: 181 VPHGLSATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENIFSKEHAASALTNSSASCES 240
VPHGLSATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENIFSKEHAASALTNSSASCES
Sbjct: 181 VPHGLSATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENIFSKEHAASALTNSSASCES 240
Query: 241 KNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDVRTAMETTGLAPWQDGVLERLKT 300
KNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDVRTAMETTGLAPWQDGVLERLKT
Sbjct: 241 KNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDVRTAMETTGLAPWQDGVLERLKT 300
Query: 301 AVDAKDYNMYLVHNGRMLIHFGQMPACTPKERDFVYGKLEAQEVKTVYTFKVPVSYCGKR 360
AVDAKDYNMYLVHNGRMLIHFGQMPACTPKERDFVYGKLEAQEVKTVYTFKVPVSYCGKR
Sbjct: 301 AVDAKDYNMYLVHNGRMLIHFGQMPACTPKERDFVYGKLEAQEVKTVYTFKVPVSYCGKR 360
Query: 361 ARLGDAMLSCKPSEHKAVDTSDLGITVEDLPKSDLIKTTLQCALERELKGHVISESRSID 420
ARLGDAMLSCKPSEHKAVDTSDLGITVEDLPKSDLIKTTLQCALERELKGHVISESRSID
Sbjct: 361 ARLGDAMLSCKPSEHKAVDTSDLGITVEDLPKSDLIKTTLQCALERELKGHVISESRSID 420
Query: 421 GLFMDFATQTYNFEPEQFSSGTVLADLTAATPGGLHVELHSECVTRRHNKSSSAFTFTCN 480
GLFMDFATQTYNFEPEQFSSGTVLADLTAATPGGLHVELHSECVTRRHNKSSSAFTFTCN
Sbjct: 421 GLFMDFATQTYNFEPEQFSSGTVLADLTAATPGGLHVELHSECVTRRHNKSSSAFTFTCN 480
Query: 481 KFFRRDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQEL 540
KFFRRDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQEL
Sbjct: 481 KFFRRDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQEL 540
Query: 541 KTFAIKPEVAPELSEGRKNNHLLGHGGKSQNSLTSLPLEILKYIAGFLDSVSLAQLSQVS 600
KTFAIKPEVAPELSEGRKNNHLLGHGGKSQNSLTSLPLEILKYIAGFLDSVSLAQLSQVS
Sbjct: 541 KTFAIKPEVAPELSEGRKNNHLLGHGGKSQNSLTSLPLEILKYIAGFLDSVSLAQLSQVS 600
Query: 601 VLMRNICATLLQERGMVLLQWKKKRYSHGGTSWRVHREIWQFSSLFSKIKSWEFNEVTSM 660
VLMRNICATLLQERGMVLLQWKKKRYSHGGTSWRVHREIWQFSSLFSKIKSWEFNEVTSM
Sbjct: 601 VLMRNICATLLQERGMVLLQWKKKRYSHGGTSWRVHREIWQFSSLFSKIKSWEFNEVTSM 660
Query: 661 SEHLKSCPFNIVEHKTDPILLTSMCQPREQARESLVSTFRIRPRGRYVS 709
SEHLKSCPFNIVEHKTDPILLTSMCQPREQARESLVSTFRIRPRGRYVS
Sbjct: 661 SEHLKSCPFNIVEHKTDPILLTSMCQPREQARESLVSTFRIRPRGRYVS 709
>gi|34577055 F-box only protein 30 [Homo sapiens]
Length = 745
Score = 394 bits (1012), Expect = e-109
Identities = 251/745 (33%), Positives = 375/745 (50%), Gaps = 81/745 (10%)
Query: 12 HRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPLEQVPCLNSEYG 71
H HC C +R C EP SC +I C L+CGA FH CK EH+LLCP E+VPCLNS++G
Sbjct: 7 HSHCVNCVSRRCMTRPEPGISCDLIGCPLVCGAVFHSCKADEHRLLCPFERVPCLNSDFG 66
Query: 72 CPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKETPSEECLDTALA- 130
CP +M+R+K+A+HL++CPASVVCC+MEWNRWP ++ +EN+ ++ LD ALA
Sbjct: 67 CPFTMARNKVAEHLEMCPASVVCCTMEWNRWPVSYADRKSYENLSRDVDEVAQLDMALAL 126
Query: 131 ------LQDQKVLFRSLKMVELFPETRE------ATEEEPTMNG-------------ETS 165
L+ KV K + + RE + E P NG + +
Sbjct: 127 QDQRMLLESLKVATMMSKATDKVSKPREQISVKSSVPEIPHANGLVSVDEESYGALYQAT 186
Query: 166 VEEMGGAVGGVDI-GLVPHGLSATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENIFSK 224
VE +DI + N + E++ +E ++ ++++ +
Sbjct: 187 VETTRSLAAALDILNTATRDIGMLNTSVPNDMDEQQNA----RESLEDQNLKDQDHLYEE 242
Query: 225 EHAASAL-----TNSSASCESKNKNDSEKEQISSGHNMVEGEGAPKKKEPQEN------Q 273
E A TN +A E +D + +S ++ A P EN
Sbjct: 243 EIGAVGGIDYNDTNQNAQSEQNGSSDLLCDLNTSSYDT----SALCNGFPLENICTQVID 298
Query: 274 KQQDVRTAMETTGLAPWQDGVLERLKTAVDAKDYNMYLVHNGRMLIHFGQMPACTPK--- 330
+ Q++ + + L +G ++ + R +I +P T +
Sbjct: 299 QNQNLHGDSKQSNLT---NGDCVASSDGTSKPSSSLAVAAQLREIIPSSALPNGTVQHIL 355
Query: 331 ------ERDFVYGKLEAQEVKTVYTFKVPVSYCGKRARLGDAMLSCKPSEHKAVDTSDLG 384
E + + K++ +VK V S+ L ++ S KP E KAVDTSDL
Sbjct: 356 MPDDEGEGELCWKKVDLGDVKNVDVLSF--SHAPSFNFLSNSCWS-KPKEDKAVDTSDLE 412
Query: 385 ITVED--LPKSDLIKTTLQCALERELKGHVISESRSIDGLFMDFATQTYNFEPEQFSSGT 442
+ + L DLI L L G IS+SR D +D TQT++ ++ T
Sbjct: 413 VAEDPMGLQGIDLITAALLFCLGDSPGGRGISDSRMADIYHIDVGTQTFSLPSAILATST 472
Query: 443 VLADLTAATPGG--------------LHVELHSECVTRRHNKSSSAFTFTCNKFFRRDEF 488
++ ++ +A+ L ++L ECV R K S FTF C + FRR EF
Sbjct: 473 MVGEIASASACDHANPQLSNPSPFQTLGLDLVLECVARYQPKQRSMFTFVCGQLFRRKEF 532
Query: 489 PLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQELKTFAIKPE 548
HFKNVH DI + LNGW + RCPLAY GCT+ Q F P Q AK+I+ + L++F ++P
Sbjct: 533 SSHFKNVHGDIHAGLNGWMEQRCPLAYYGCTYSQRRFCPSIQGAKIIHDRHLRSFGVQPC 592
Query: 549 VAPELSEGRKNNHLLGHGGKSQNSLTSLPLEILKYIAGFLDSVSLAQLSQVSVLMRNICA 608
V+ L E +N L G + L+SLP E+L++IAGFLD SL QLS VS LMR++C
Sbjct: 593 VSTVLVEPARNCVL----GLHNDHLSSLPFEVLQHIAGFLDGFSLCQLSCVSKLMRDVCG 648
Query: 609 TLLQERGMVLLQWKKKRYSHGGTSWRVHREIWQFSSLFSKIKSWEFNEVTSMSEHLKSCP 668
+LLQ RGMV+LQW K++Y G +SW++ ++W+FS+ F + W+F ++ SM++HLK C
Sbjct: 649 SLLQSRGMVILQWGKRKYPEGNSSWQIKEKVWRFSTAFCSVNEWKFADILSMADHLKKCS 708
Query: 669 FNIVEHKTDPILLTSMCQPREQARE 693
+N+VE + + I L MC RE +E
Sbjct: 709 YNVVEKREEAIPLPCMCVTRELTKE 733
>gi|22027630 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 36.6 bits (83), Expect = 0.082
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 54 HQLLCPLEQVPCLNSEYGCPLSMSRHKLAKHLQ 86
+ L CP +PC S +GC M R+ LA+HLQ
Sbjct: 231 YDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQ 263
>gi|4759254 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 36.6 bits (83), Expect = 0.082
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 54 HQLLCPLEQVPCLNSEYGCPLSMSRHKLAKHLQ 86
+ L CP +PC S +GC M R+ LA+HLQ
Sbjct: 231 YDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQ 263
>gi|115511012 coiled-coil domain containing 136 [Homo sapiens]
Length = 1154
Score = 36.6 bits (83), Expect = 0.082
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 146 LFPETREATEEEPTMNGETSVEEMGGAVGGVDIGLVPHGLSATNGEMAELSQEEREVLAK 205
L+ E E EEE + E + GG+VG + + GLS T E+ EL + +++A+
Sbjct: 13 LYEEEEEEEEEEEEVEEEEEQVQKGGSVGSLSVN-KHRGLSLTETELEELRAQVLQLVAE 71
Query: 206 TKEGMDLVKFGQWEN 220
+E +L GQ E+
Sbjct: 72 LEETRELA--GQHED 84
>gi|116006951 polycystin 1-like 2 isoform a [Homo sapiens]
Length = 2459
Score = 35.0 bits (79), Expect = 0.24
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 194 ELSQEEREVLAKTKEGMDLVKFGQWENIFSKEHAASALTNSSASC--ESKNKNDSEKEQI 251
EL++ REV ++KE L QWE + +HA+ AL SA E + + + ++
Sbjct: 950 ELAEVLREVTCRSKE---LTPSAQWEASLALQHASEALLTVSAKARPEDQRRQAATRDLF 1006
Query: 252 SSGHNMVEGEGAPKKKEPQENQKQQ 276
+ +++E + + +EP E Q
Sbjct: 1007 QAVGSVLEASLSNRPEEPAEASSSQ 1031
>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
Length = 955
Score = 34.7 bits (78), Expect = 0.31
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 20/106 (18%)
Query: 2 GKARRSPPGHHRH---------CEGCFNRHCHIPVEPNTS---CLVISCHLLCGATFHM- 48
G R PPGH C F C P+ C + C CG+ +
Sbjct: 23 GYTGRKPPGHFAAERRRLGPHVCLSGFGSGCCPGWAPSMGGGHCTLPLCSFGCGSGICIA 82
Query: 49 -----CKEAEHQLLCPLEQVPCLNSEYGCPLSMSRHKLAKHLQVCP 89
C++ E CP PC EYGC L+ + + +VCP
Sbjct: 83 PNVCSCQDGEQGATCPETHGPC--GEYGCDLTCNHGGCQEVARVCP 126
>gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b
[Homo sapiens]
Length = 806
Score = 34.3 bits (77), Expect = 0.41
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 16/169 (9%)
Query: 131 LQDQKVLFRSLKMVELFPETREATEEEPTMNGETSVEEMGGAV--GGVDIGLVPHGL--- 185
L+ +++ + LK EL + A ++E G ++E G++ GG G GL
Sbjct: 20 LKKRRLSDKGLK-AELMERLQAALDDEEA-GGRPAMEPGNGSLDLGGDSAGRSGAGLEQE 77
Query: 186 SATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENI--------FSKEHAASALTNSSAS 237
+A G+ E +EE E +G D ++ G+ +E AAS N
Sbjct: 78 AAAGGDEEEEEEEEEEEGISALDG-DQMELGEENGAAGAADSGPMEEEEAASEDENGDDQ 136
Query: 238 CESKNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDVRTAMETTG 286
+ +++ E+ +G GE P+ Q+ Q QQ A E G
Sbjct: 137 GFQEGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAAKEAAG 185
>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
[Homo sapiens]
Length = 825
Score = 34.3 bits (77), Expect = 0.41
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 16/169 (9%)
Query: 131 LQDQKVLFRSLKMVELFPETREATEEEPTMNGETSVEEMGGAV--GGVDIGLVPHGL--- 185
L+ +++ + LK EL + A ++E G ++E G++ GG G GL
Sbjct: 20 LKKRRLSDKGLK-AELMERLQAALDDEEA-GGRPAMEPGNGSLDLGGDSAGRSGAGLEQE 77
Query: 186 SATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENI--------FSKEHAASALTNSSAS 237
+A G+ E +EE E +G D ++ G+ +E AAS N
Sbjct: 78 AAAGGDEEEEEEEEEEEGISALDG-DQMELGEENGAAGAADSGPMEEEEAASEDENGDDQ 136
Query: 238 CESKNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDVRTAMETTG 286
+ +++ E+ +G GE P+ Q+ Q QQ A E G
Sbjct: 137 GFQEGEDELGDEEEGAGDENGHGEQQPQPPATQQQQPQQQRGAAKEAAG 185
>gi|88759339 aster-associated protein [Homo sapiens]
Length = 647
Score = 34.3 bits (77), Expect = 0.41
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 191 EMAELSQEEREVLAKTKEGMDLV-KFGQWENIFSKEHAASALTNS-SASCESKNKNDSEK 248
E A+ +EE V K K+ + V K+ + + F K+ + + K D +K
Sbjct: 538 ERAKKQKEEETVAEKKKDNLTAVEKWNEKKEAFFKQKEKEKINEKRKEELKRAEKKDKDK 597
Query: 249 EQISSGHNMVEGEGAPKKKEPQENQKQQDVRTAMETTGLAPW 290
+ I+ +E K+K+ + +KQ+ + +E+ L PW
Sbjct: 598 QAINEYEKWLEN----KEKQERIERKQKKRHSFLESEALPPW 635
>gi|145275198 ADAMTS-like 3 precursor [Homo sapiens]
Length = 1691
Score = 33.9 bits (76), Expect = 0.53
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 11 HHRHCEGCFNRHCHIPVEPNT--SCLVISCHLLCGATFHMCKEAEHQLLCPLEQ 62
H R C+ RHC +P + CL SC C T H C +H LC L++
Sbjct: 1626 HTRSCKPVAKRHCVQKKKPISWRHCLGPSCDRDCTDTTHYCMFVKHLNLCSLDR 1679
>gi|11863152 jumonji, AT rich interactive domain 2 protein [Homo
sapiens]
Length = 1246
Score = 33.9 bits (76), Expect = 0.53
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 225 EHAASALTNSSASCESKNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDVRTAME 283
E +A N+S+SC+S + + + +GH + ++KEP + K ++ A E
Sbjct: 193 EDVKTATNNASSSCQSTPRKGKTHKHVHNGHVFNGSSRSTREKEPVQKHKSKEATPAKE 251
>gi|21704279 jagged 2 isoform b precursor [Homo sapiens]
Length = 1200
Score = 33.1 bits (74), Expect = 0.91
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 475 FTFTCNKFFR-RDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYL--GCTFVQNHFRPPGQ 530
++ TCNKF R R++F H+ ++C++GW C A GC + PG+
Sbjct: 203 YSATCNKFCRPRNDFFGHYTCDQYGNKACMDGWMGKECKEAVCKQGCNLLHGGCTVPGE 261
>gi|21704277 jagged 2 isoform a precursor [Homo sapiens]
Length = 1238
Score = 33.1 bits (74), Expect = 0.91
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 475 FTFTCNKFFR-RDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYL--GCTFVQNHFRPPGQ 530
++ TCNKF R R++F H+ ++C++GW C A GC + PG+
Sbjct: 203 YSATCNKFCRPRNDFFGHYTCDQYGNKACMDGWMGKECKEAVCKQGCNLLHGGCTVPGE 261
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 32.7 bits (73), Expect = 1.2
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 26/172 (15%)
Query: 111 LHENIMKETPSEECLDTALALQDQKVLFRSLKMVELFPETREATEEE----PTMNGETSV 166
LHE+ + P + L ALA++D +V L +VE RE ++E P + +
Sbjct: 72 LHESDSESVPRDFKLSDALAVEDDQVAPVPLNVVETSSSVRERKKKEKKQKPVLEEQVIK 131
Query: 167 EEMGGAVGGVDIGLVPHGLSATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENIFSKEH 226
E + G + VP T A S +++ K+K G D ++
Sbjct: 132 ESDASKIPGKKVEPVPVTKQPTPPSEAAAS-KKKPGQKKSKNGSD-----------DQDK 179
Query: 227 AASALTNSSASCESKNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDV 278
L S E+ + K++ SG KKK + QK ++V
Sbjct: 180 KVETLMVPSKRQEALPLHQETKQESGSG----------KKKASSKKQKTENV 221
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 32.7 bits (73), Expect = 1.2
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 26/172 (15%)
Query: 111 LHENIMKETPSEECLDTALALQDQKVLFRSLKMVELFPETREATEEE----PTMNGETSV 166
LHE+ + P + L ALA++D +V L +VE RE ++E P + +
Sbjct: 72 LHESDSESVPRDFKLSDALAVEDDQVAPVPLNVVETSSSVRERKKKEKKQKPVLEEQVIK 131
Query: 167 EEMGGAVGGVDIGLVPHGLSATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENIFSKEH 226
E + G + VP T A S +++ K+K G D ++
Sbjct: 132 ESDASKIPGKKVEPVPVTKQPTPPSEAAAS-KKKPGQKKSKNGSD-----------DQDK 179
Query: 227 AASALTNSSASCESKNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDV 278
L S E+ + K++ SG KKK + QK ++V
Sbjct: 180 KVETLMVPSKRQEALPLHQETKQESGSG----------KKKASSKKQKTENV 221
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 32.7 bits (73), Expect = 1.2
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 26/172 (15%)
Query: 111 LHENIMKETPSEECLDTALALQDQKVLFRSLKMVELFPETREATEEE----PTMNGETSV 166
LHE+ + P + L ALA++D +V L +VE RE ++E P + +
Sbjct: 72 LHESDSESVPRDFKLSDALAVEDDQVAPVPLNVVETSSSVRERKKKEKKQKPVLEEQVIK 131
Query: 167 EEMGGAVGGVDIGLVPHGLSATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENIFSKEH 226
E + G + VP T A S +++ K+K G D ++
Sbjct: 132 ESDASKIPGKKVEPVPVTKQPTPPSEAAAS-KKKPGQKKSKNGSD-----------DQDK 179
Query: 227 AASALTNSSASCESKNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDV 278
L S E+ + K++ SG KKK + QK ++V
Sbjct: 180 KVETLMVPSKRQEALPLHQETKQESGSG----------KKKASSKKQKTENV 221
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 32.7 bits (73), Expect = 1.2
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 26/172 (15%)
Query: 111 LHENIMKETPSEECLDTALALQDQKVLFRSLKMVELFPETREATEEE----PTMNGETSV 166
LHE+ + P + L ALA++D +V L +VE RE ++E P + +
Sbjct: 72 LHESDSESVPRDFKLSDALAVEDDQVAPVPLNVVETSSSVRERKKKEKKQKPVLEEQVIK 131
Query: 167 EEMGGAVGGVDIGLVPHGLSATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENIFSKEH 226
E + G + VP T A S +++ K+K G D ++
Sbjct: 132 ESDASKIPGKKVEPVPVTKQPTPPSEAAAS-KKKPGQKKSKNGSD-----------DQDK 179
Query: 227 AASALTNSSASCESKNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDV 278
L S E+ + K++ SG KKK + QK ++V
Sbjct: 180 KVETLMVPSKRQEALPLHQETKQESGSG----------KKKASSKKQKTENV 221
>gi|157676334 transmembrane protein 8 (five membrane-spanning
domains) [Homo sapiens]
Length = 771
Score = 32.7 bits (73), Expect = 1.2
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 29 PNTSCLVISCHLLCGATFHMCKEAEHQLLCPLEQVPCLN--SEYGCPLSMSRHKLAKHLQ 86
P T +S L+C C++A + L VPCLN YG L + RH
Sbjct: 462 PETDNWYLSLQLMCPENAEDCEQAVVHVETTLYLVPCLNDCGPYGQCLLLRRHSYL---- 517
Query: 87 VCPASVVCCSMEWNRWPNVDSET 109
+ C W W D+ T
Sbjct: 518 ---YASCSCKAGWRGWSCTDNST 537
>gi|4557679 jagged 1 precursor [Homo sapiens]
Length = 1218
Score = 32.3 bits (72), Expect = 1.6
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 475 FTFTCNKFFR-RDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYL--GCTFVQNHFRPPG 529
+ F CNKF R RD+F H+ ++C+ GW C A GC+ + PG
Sbjct: 192 YGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHGSCKLPG 249
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 32.3 bits (72), Expect = 1.6
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 18/168 (10%)
Query: 131 LQDQKVLFRSLKMVELFPETREATEEEPTMNGETSVEEMGGAVGG-VDIGLVPHGLSATN 189
+Q KV LK+ F E E EE + ++ +EE A+ + + + A
Sbjct: 436 IQKPKVEAPKLKVQHKFVE--EIIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAE 493
Query: 190 GEMAELSQEEREVLAKT------------KEGMDLVKFGQWENIFSKEHAASALTNSSAS 237
+ E EE EV AK +EG + GQ E E A S S
Sbjct: 494 EKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGS 553
Query: 238 CESKNKNDSEKEQISSGHNMVEGEG--APKKKEPQENQKQQDVRTAME 283
E + ++ E+ + G E EG A K+E + +K ++V T E
Sbjct: 554 -EKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEE 600
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 32.3 bits (72), Expect = 1.6
Identities = 43/168 (25%), Positives = 66/168 (39%), Gaps = 18/168 (10%)
Query: 131 LQDQKVLFRSLKMVELFPETREATEEEPTMNGETSVEEMGGAVGG-VDIGLVPHGLSATN 189
+Q KV LK+ F E E EE + ++ +EE A+ + + + A
Sbjct: 60 IQKPKVEAPKLKVQHKFVE--EIIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAE 117
Query: 190 GEMAELSQEEREVLAKT------------KEGMDLVKFGQWENIFSKEHAASALTNSSAS 237
+ E EE EV AK +EG + GQ E E A S S
Sbjct: 118 EKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGS 177
Query: 238 CESKNKNDSEKEQISSGHNMVEGEG--APKKKEPQENQKQQDVRTAME 283
E + ++ E+ + G E EG A K+E + +K ++V T E
Sbjct: 178 -EKEGSSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEE 224
>gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Homo
sapiens]
Length = 1551
Score = 32.3 bits (72), Expect = 1.6
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 184 GLSATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENIFSKEHAASALTNSSASCESKNK 243
GL A E+ ++ E+L + +E + AA+A + S + +
Sbjct: 504 GLQAQEQELCRAQGQQEELLQRLQEAQE-------------REAATASQTRALSSQLEEA 550
Query: 244 NDSEKE---QISSGHNMVEGEGAPKKKEPQENQKQQDVRTAMETTGLAPWQDGVLE-RLK 299
+++E Q+SS V ++ +E+ + + + TA ET G+ P + G E +L+
Sbjct: 551 RAAQRELEAQVSSLSRQVTQLQGQWEQRLEESSQAKTIHTASETNGMGPPEGGPQEAQLR 610
Query: 300 TAVDAKDYNMYLVHNGR 316
V A + H+ R
Sbjct: 611 KEVAALREQLEQAHSHR 627
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 32.0 bits (71), Expect = 2.0
Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 151 REATEEEPTMNGETSVEEMGGAVGGVDIGLVPHGLSATNGEMAEL-SQEEREVLAKTKEG 209
+E TE+E + +S ++ G D G G+S++ GE+ L +E+++L K
Sbjct: 1336 KEKTEKEDDKSDTSSSQQPKSPQGLSDTGYSSDGISSSLGEIPSLIPTDEKDILKGLK-- 1393
Query: 210 MDLVKFGQWENIFSKEHAASALTNSSASCESKNKNDSEKEQISSGHNMVEGEGAPKKKEP 269
++ FS+E + S+ + A ES + E + + E + P + P
Sbjct: 1394 ---------KDSFSQESSPSS-PSDLAKLESTVLSILEAQASTLADEKSEKKTQPHEVSP 1443
Query: 270 QENQKQQDVRTAMETTGLAPWQDGVLE 296
++ + Q+ ++ ET + ++ + E
Sbjct: 1444 EQPKDQEKTQSLSETLEITISEEEIKE 1470
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 32.0 bits (71), Expect = 2.0
Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 13/147 (8%)
Query: 151 REATEEEPTMNGETSVEEMGGAVGGVDIGLVPHGLSATNGEMAEL-SQEEREVLAKTKEG 209
+E TE+E + +S ++ G D G G+S++ GE+ L +E+++L K
Sbjct: 1336 KEKTEKEDDKSDTSSSQQPKSPQGLSDTGYSSDGISSSLGEIPSLIPTDEKDILKGLK-- 1393
Query: 210 MDLVKFGQWENIFSKEHAASALTNSSASCESKNKNDSEKEQISSGHNMVEGEGAPKKKEP 269
++ FS+E + S+ + A ES + E + + E + P + P
Sbjct: 1394 ---------KDSFSQESSPSS-PSDLAKLESTVLSILEAQASTLADEKSEKKTQPHEVSP 1443
Query: 270 QENQKQQDVRTAMETTGLAPWQDGVLE 296
++ + Q+ ++ ET + ++ + E
Sbjct: 1444 EQPKDQEKTQSLSETLEITISEEEIKE 1470
>gi|122937400 odz, odd Oz/ten-m homolog 3 [Homo sapiens]
Length = 2699
Score = 32.0 bits (71), Expect = 2.0
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Query: 177 DIGLVPHGLSATNGEMAELSQEEREVLAKTKEGMDL----VKFGQWENIFSKEHAASALT 232
++GL G S + G A+ E E + + M L VK G+ + S+ ++A LT
Sbjct: 102 EMGLPHRGYSISAGSDADT---ENEAVMSPEHAMRLWGRGVKSGRSSCLSSRSNSALTLT 158
Query: 233 NSSASCESKNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQ 273
++ E +NK+DSE EQ +S +G+ + P Q
Sbjct: 159 DT----EHENKSDSENEQPASN----QGQSTLQPLPPSHKQ 191
>gi|34577059 adipose differentiation-related protein [Homo sapiens]
Length = 437
Score = 31.2 bits (69), Expect = 3.5
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 195 LSQEEREVLAKTKEGMDLVK----FGQWENIFSKEHAASALTNSSASCESKNKNDSEKEQ 250
L++EE E AK EG DLV+ + + ++ +K H+ + S E+K K+ Q
Sbjct: 193 LTEEELEKEAKKVEGFDLVQKPSYYVRLGSLSTKLHSRAYQQALSRVKEAKQKSQQTISQ 252
Query: 251 ISSGHNMVEGEGAPKKKEPQENQKQQDVR 279
+ S +++E +K NQK QD +
Sbjct: 253 LHSTVHLIE---FARKNVYSANQKIQDAQ 278
>gi|13775178 testis expressed 13B [Homo sapiens]
Length = 312
Score = 30.8 bits (68), Expect = 4.5
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 217 QWENIFSKEHAASALTNSSASCESKNKNDSEKEQISSGHNMVEGEGAPKKKE-------- 268
QW F+K H ++AL +S E K + + E + + + E A ++E
Sbjct: 91 QWLQGFAKLHRSAALVLASNLTELKEQQEMECNEATFQLQLTETSLAEVQRERDMLRWKL 150
Query: 269 ------PQENQKQQDVRTAMETTGLAPWQDGVLERLKTAVDA 304
P + Q Q V + T G W +G E+ K AV A
Sbjct: 151 FHAELAPPQGQGQATVFPGLATAG-GDWTEGAGEQEKEAVAA 191
>gi|22027622 TNF receptor-associated factor 4 [Homo sapiens]
Length = 470
Score = 30.8 bits (68), Expect = 4.5
Identities = 28/97 (28%), Positives = 35/97 (36%), Gaps = 20/97 (20%)
Query: 1 MGKARRSPPGHHRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPL 60
M +RR P H +H C R + C CG F H+ +CP
Sbjct: 119 MKLSRRDLPAHLQH--DCPKRR-------------LKCEF-CGCDFSGEAYESHEGMCPQ 162
Query: 61 EQVPCLNSEYGCPLSMSRHKLAKH-LQVCPASVVCCS 96
E V C N C M R LA+H CP C+
Sbjct: 163 ESVYCENK---CGARMMRRLLAQHATSECPKRTQPCT 196
Score = 30.4 bits (67), Expect = 5.9
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 63 VPCLNSEYGCPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKETP 120
+ C++SE GC S L HL C +V+ C NR P S L ++ + P
Sbjct: 81 IRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCP---NRCPMKLSRRDLPAHLQHDCP 135
>gi|126032338 ryanodine receptor 3 [Homo sapiens]
Length = 4870
Score = 30.8 bits (68), Expect = 4.5
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 354 VSYCGKRARLGDAM-LSCKPSEHKAVDTSDLGITVEDLPKSDLIKTTLQCALERELKGHV 412
+S+ G R G A L + H T D G+ ++D KSD T +ELK +
Sbjct: 271 ISWSGSNIRWGQAFRLRHLTTGHYLALTEDQGLILQDRAKSDTKSTAFSFRASKELKEKL 330
Query: 413 -ISESRSIDGL 422
S R I+G+
Sbjct: 331 DSSHKRDIEGM 341
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,907,308
Number of Sequences: 37866
Number of extensions: 1332746
Number of successful extensions: 4020
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 3974
Number of HSP's gapped (non-prelim): 87
length of query: 709
length of database: 18,247,518
effective HSP length: 109
effective length of query: 600
effective length of database: 14,120,124
effective search space: 8472074400
effective search space used: 8472074400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.