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Search of human proteins with 156523260
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156523260 SKA3 [Homo sapiens]
(412 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156523260 SKA3 [Homo sapiens] 825 0.0
gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo sa... 40 0.004
gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo sa... 40 0.004
gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo sa... 40 0.004
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 36 0.073
gi|153791761 RMI1, RecQ mediated genome instability 1, homolog [... 34 0.28
gi|153792110 HEG homolog 1 [Homo sapiens] 34 0.28
gi|83367077 mucin 16 [Homo sapiens] 33 0.36
gi|32698692 zinc finger, DHHC domain containing 8 [Homo sapiens] 33 0.47
gi|55769585 HEF-like protein [Homo sapiens] 33 0.62
gi|221316754 exophilin 5 isoform c [Homo sapiens] 32 1.1
gi|221316751 exophilin 5 isoform b [Homo sapiens] 32 1.1
gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] 32 1.1
gi|221316747 exophilin 5 isoform a [Homo sapiens] 32 1.1
gi|186910286 ribonuclease H2, subunit B isoform 1 [Homo sapiens] 31 1.8
gi|34304381 inversin isoform a [Homo sapiens] 31 1.8
gi|34304379 inversin isoform b [Homo sapiens] 31 1.8
gi|52145305 patched 2 [Homo sapiens] 31 2.3
gi|115527120 nebulin [Homo sapiens] 31 2.3
gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens] 31 2.3
gi|16554449 zonadhesin isoform 3 [Homo sapiens] 31 2.3
gi|27881494 zonadhesin isoform 6 [Homo sapiens] 31 2.3
gi|125656165 THO complex 2 [Homo sapiens] 30 3.1
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 30 3.1
gi|87299628 biorientation of chromosomes in cell division 1-like... 30 3.1
gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1 ... 30 3.1
gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens] 30 3.1
gi|46409304 glutamate-rich 1 [Homo sapiens] 30 3.1
gi|35038601 spindle assembly abnormal protein 6 [Homo sapiens] 30 3.1
gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-ch... 30 4.0
>gi|156523260 SKA3 [Homo sapiens]
Length = 412
Score = 825 bits (2132), Expect = 0.0
Identities = 412/412 (100%), Positives = 412/412 (100%)
Query: 1 MDPIRSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINI 60
MDPIRSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINI
Sbjct: 1 MDPIRSFCGKLRSLASTLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINI 60
Query: 61 LLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSD 120
LLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSD
Sbjct: 61 LLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSD 120
Query: 121 PELSNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVN 180
PELSNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVN
Sbjct: 121 PELSNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVN 180
Query: 181 NYKEEPVIVTPPTKQSLVKVLKTPKCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGL 240
NYKEEPVIVTPPTKQSLVKVLKTPKCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGL
Sbjct: 181 NYKEEPVIVTPPTKQSLVKVLKTPKCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGL 240
Query: 241 KNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTK 300
KNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTK
Sbjct: 241 KNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTK 300
Query: 301 NSIALVSTNYPLSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPT 360
NSIALVSTNYPLSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPT
Sbjct: 301 NSIALVSTNYPLSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPT 360
Query: 361 PPEVTKIPEDILQLLSKYNSNLATPIAIKAVPPSKRFLKHGQNIRDVSNKEN 412
PPEVTKIPEDILQLLSKYNSNLATPIAIKAVPPSKRFLKHGQNIRDVSNKEN
Sbjct: 361 PPEVTKIPEDILQLLSKYNSNLATPIAIKAVPPSKRFLKHGQNIRDVSNKEN 412
>gi|70167032 adenosine deaminase, RNA-specific isoform c [Homo
sapiens]
Length = 1181
Score = 40.0 bits (92), Expect = 0.004
Identities = 96/412 (23%), Positives = 150/412 (36%), Gaps = 76/412 (18%)
Query: 18 LDCETARLQRALDGEESDFEDYPMRIL--------------YDLHSEVQTLKDDINILLD 63
+DC ++ Q E S ++D RIL +DL ++ T K +IN +L
Sbjct: 123 VDCLSSHFQ-----ELSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL- 176
Query: 64 KARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSDPEL 123
K K+ E + + KI Q + V + H Q A NSDP L
Sbjct: 177 ---------YSLAKKGKLQKEAGTPPLWKIAVSTQAWNQHSGVVRPDGHSQGAPNSDPSL 227
Query: 124 SNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVNNYK 183
E+ T V +DL +P +A S + D SQ PN +
Sbjct: 228 EP-EDRNSTSVSEDLLEPFIAVSAQAWNQHSGVVRPDSH------SQGSPNSDPGLE--- 277
Query: 184 EEPVIVTPPTKQSLVKVLKTPKCALKMDDF-ECVTPKLEHFGISEYTMCLNEDYTMGLKN 242
P + L+ P L M + E + L F +S+ + LN +GL
Sbjct: 278 --------PEDSNSTSALEDPLEFLDMAEIKEKICDYL--FNVSD-SSALNLAKNIGLTK 326
Query: 243 ARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEY---TNSPLVPTFCTPGLKIPST 299
AR+ + ID E + + T PI +K N+ VP T IP T
Sbjct: 327 ARDINA-VLIDMERQGDVYRQGTTPPIWHLTDKKRERMQIKRNTNSVPE--TAPAAIPET 383
Query: 300 KNSIALVSTNYPLSK-TNSSSNDLEVEDRTSLVLNSDTCFENLTDP---------SSPTI 349
K + ++ N P S +N+ +VE+ V+ + E +P + P+
Sbjct: 384 KRNAEFLTCNIPTSNASNNMVTTEKVENGQEPVIKLENRQEARPEPARLKPPVHYNGPSK 443
Query: 350 SSYENLLRTPTPPEVTKIPEDILQLLSKYNSNLATPIAIKAVPPSKRFLKHG 401
+ Y + + IP+D+ NS A P +A+ F HG
Sbjct: 444 AGYVDFENGQWATD--DIPDDL-------NSIRAAPGEFRAIMEMPSFYSHG 486
>gi|70166944 adenosine deaminase, RNA-specific isoform b [Homo
sapiens]
Length = 1200
Score = 40.0 bits (92), Expect = 0.004
Identities = 96/412 (23%), Positives = 150/412 (36%), Gaps = 76/412 (18%)
Query: 18 LDCETARLQRALDGEESDFEDYPMRIL--------------YDLHSEVQTLKDDINILLD 63
+DC ++ Q E S ++D RIL +DL ++ T K +IN +L
Sbjct: 123 VDCLSSHFQ-----ELSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL- 176
Query: 64 KARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSDPEL 123
K K+ E + + KI Q + V + H Q A NSDP L
Sbjct: 177 ---------YSLAKKGKLQKEAGTPPLWKIAVSTQAWNQHSGVVRPDGHSQGAPNSDPSL 227
Query: 124 SNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVNNYK 183
E+ T V +DL +P +A S + D SQ PN +
Sbjct: 228 EP-EDRNSTSVSEDLLEPFIAVSAQAWNQHSGVVRPDSH------SQGSPNSDPGLE--- 277
Query: 184 EEPVIVTPPTKQSLVKVLKTPKCALKMDDF-ECVTPKLEHFGISEYTMCLNEDYTMGLKN 242
P + L+ P L M + E + L F +S+ + LN +GL
Sbjct: 278 --------PEDSNSTSALEDPLEFLDMAEIKEKICDYL--FNVSD-SSALNLAKNIGLTK 326
Query: 243 ARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEY---TNSPLVPTFCTPGLKIPST 299
AR+ + ID E + + T PI +K N+ VP T IP T
Sbjct: 327 ARDINA-VLIDMERQGDVYRQGTTPPIWHLTDKKRERMQIKRNTNSVPE--TAPAAIPET 383
Query: 300 KNSIALVSTNYPLSK-TNSSSNDLEVEDRTSLVLNSDTCFENLTDP---------SSPTI 349
K + ++ N P S +N+ +VE+ V+ + E +P + P+
Sbjct: 384 KRNAEFLTCNIPTSNASNNMVTTEKVENGQEPVIKLENRQEARPEPARLKPPVHYNGPSK 443
Query: 350 SSYENLLRTPTPPEVTKIPEDILQLLSKYNSNLATPIAIKAVPPSKRFLKHG 401
+ Y + + IP+D+ NS A P +A+ F HG
Sbjct: 444 AGYVDFENGQWATD--DIPDDL-------NSIRAAPGEFRAIMEMPSFYSHG 486
>gi|70166852 adenosine deaminase, RNA-specific isoform a [Homo
sapiens]
Length = 1226
Score = 40.0 bits (92), Expect = 0.004
Identities = 96/412 (23%), Positives = 150/412 (36%), Gaps = 76/412 (18%)
Query: 18 LDCETARLQRALDGEESDFEDYPMRIL--------------YDLHSEVQTLKDDINILLD 63
+DC ++ Q E S ++D RIL +DL ++ T K +IN +L
Sbjct: 123 VDCLSSHFQ-----ELSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL- 176
Query: 64 KARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSDPEL 123
K K+ E + + KI Q + V + H Q A NSDP L
Sbjct: 177 ---------YSLAKKGKLQKEAGTPPLWKIAVSTQAWNQHSGVVRPDGHSQGAPNSDPSL 227
Query: 124 SNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVNNYK 183
E+ T V +DL +P +A S + D SQ PN +
Sbjct: 228 EP-EDRNSTSVSEDLLEPFIAVSAQAWNQHSGVVRPDSH------SQGSPNSDPGLE--- 277
Query: 184 EEPVIVTPPTKQSLVKVLKTPKCALKMDDF-ECVTPKLEHFGISEYTMCLNEDYTMGLKN 242
P + L+ P L M + E + L F +S+ + LN +GL
Sbjct: 278 --------PEDSNSTSALEDPLEFLDMAEIKEKICDYL--FNVSD-SSALNLAKNIGLTK 326
Query: 243 ARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEY---TNSPLVPTFCTPGLKIPST 299
AR+ + ID E + + T PI +K N+ VP T IP T
Sbjct: 327 ARDINA-VLIDMERQGDVYRQGTTPPIWHLTDKKRERMQIKRNTNSVPE--TAPAAIPET 383
Query: 300 KNSIALVSTNYPLSK-TNSSSNDLEVEDRTSLVLNSDTCFENLTDP---------SSPTI 349
K + ++ N P S +N+ +VE+ V+ + E +P + P+
Sbjct: 384 KRNAEFLTCNIPTSNASNNMVTTEKVENGQEPVIKLENRQEARPEPARLKPPVHYNGPSK 443
Query: 350 SSYENLLRTPTPPEVTKIPEDILQLLSKYNSNLATPIAIKAVPPSKRFLKHG 401
+ Y + + IP+D+ NS A P +A+ F HG
Sbjct: 444 AGYVDFENGQWATD--DIPDDL-------NSIRAAPGEFRAIMEMPSFYSHG 486
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 35.8 bits (81), Expect = 0.073
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 18 LDCETARLQRALDGEESDFEDYPMR-ILYDLHSEVQTLKDDINILLDKARLENQEGIDFI 76
++ E A+ ++ + D ++Y R +++++ Q + DD ++ + + +DF
Sbjct: 1182 MEMEIAKSEK-FGSPKKDVDEYERRSLVHEVGKPPQDVTDDS----PPSKKKRMDHVDFD 1236
Query: 77 KATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSDPELSNCENFQKTDVK 135
TK E+N +I E ++ G SP V+ S HE E P L + + K D K
Sbjct: 1237 ICTK--RERNYRSSRQISEDSERTGGSPSVRHGSFHEDEDPIGSPRLLSVKGSPKVDEK 1293
>gi|153791761 RMI1, RecQ mediated genome instability 1, homolog
[Homo sapiens]
Length = 625
Score = 33.9 bits (76), Expect = 0.28
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 10/159 (6%)
Query: 235 DYTMGLKNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGL 294
++++ KN NN SE+ + + D F PS + Q + + N PL F T
Sbjct: 361 NFSLTCKNGNNNWSEKNVSEQMTNEDKSFGCPS-VRDQNRSIFSVHCNVPLAHDF-TNKE 418
Query: 295 KIPSTKNSIALVSTNYPLSKTNSSSND---LEVEDRTSLVLNSDTCFENLTDPSSPTISS 351
K T N I S++ S N N V+ R S + N + C NL S ++ S
Sbjct: 419 KNLETDNKIKQTSSSDSHSLNNKILNREVVNYVQKRNSQISNENDC--NL---QSCSLRS 473
Query: 352 YENLLRTPTPPEVTKIPEDILQLLSKYNSNLATPIAIKA 390
EN + ++ P L +L T + +KA
Sbjct: 474 SENSINLSIAMDLYSPPFVYLSVLMASKPKEVTTVKVKA 512
>gi|153792110 HEG homolog 1 [Homo sapiens]
Length = 1381
Score = 33.9 bits (76), Expect = 0.28
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 30/195 (15%)
Query: 138 LSDPPVASSCISEKSPRSPQLS--DFGLERYIVSQVLPNPPQAVNNYKEEPVIVTP---- 191
+SD +SS S S P L ++ S +LP+ +V+ K TP
Sbjct: 656 VSDSSSSSSSSSSSSSSGPPLPLPSVSQSHHLFSSILPSTRASVHLLKSTSDASTPWSSS 715
Query: 192 --PTKQSLVKVLKTP----KCALKMDDFECVTPKLEHFGISEY---TMC-----LNEDYT 237
P SL P + L V P+ ++ + TM L+ T
Sbjct: 716 PSPLPVSLTTSTSAPLSVSQTTLPQSSSTPVLPRARETPVTSFQTSTMTSFMTMLHSSQT 775
Query: 238 MGLKNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLK-- 295
LK+ ++ +E + TES+ +PS + E + A TNSPL P+ +
Sbjct: 776 ADLKS-QSTPHQEKVITESK-------SPSLVSLPTESTKAVTTNSPLPPSLTESSTEQT 827
Query: 296 IPSTKNSIALVSTNY 310
+P+T ++A +S +
Sbjct: 828 LPATSTNLAQMSPTF 842
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 33.5 bits (75), Expect = 0.36
Identities = 58/261 (22%), Positives = 110/261 (42%), Gaps = 30/261 (11%)
Query: 75 FIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNSVHEQEAINSDPELSNCE--NFQKT 132
F++ +++ E S K+RE S ++ ++V + +I + E+S E + +T
Sbjct: 7230 FLETSRIQKESISSLSPKLRETGSSVETSSAIETSAVLSEVSIGATTEISRTEVTSSSRT 7289
Query: 133 DVKDDLSD---PPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVNNYKEEPVIV 189
+ P ++++ K P SP L++ E I +Q +PP + + E +
Sbjct: 7290 SISGSAESTMLPEISTTRKIIKFPTSPILAE-SSEMTIKTQT--SPPGSTS---ESTFTL 7343
Query: 190 TPPTKQSLVKVLKTPKCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGLKNARNNKSE 249
T SLV T +T +L H SE T ++ + + E
Sbjct: 7344 DTSTTPSLVITHST------------MTQRLPH---SEITTLVSRG-AGDVPRPSSLPVE 7387
Query: 250 EAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPG-LKIPSTKNSIALVST 308
E S+L+ + +PSP+ L S +++S V + TPG +K ++ A T
Sbjct: 7388 ETSPPSSQLSLSAMISPSPVSSTLPAS--SHSSSASVTSLLTPGQVKTTEVLDASAEPET 7445
Query: 309 NYPLSKTNSSSNDLEVEDRTS 329
+ P S +++S L + T+
Sbjct: 7446 SSPPSLSSTSVEILATSEVTT 7466
Score = 30.4 bits (67), Expect = 3.1
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Query: 255 ESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTKNSIALVSTNYP--- 311
ESR + V T P ++ +D + + L P + KIP+T I YP
Sbjct: 6532 ESRPSSPVHLTSLPTSGLVKTTDMLASVASLPPNLGSTSHKIPTTSEDIKDTEKMYPSTN 6591
Query: 312 LSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPTP--PEVTKI 367
++ TN + E E +S+ S+ +T P + + + ++ T P E+T+I
Sbjct: 6592 IAVTNVGTTTSEKESYSSVPAYSEP--PKVTSPMVTSFNIRDTIVSTSMPGSSEITRI 6647
>gi|32698692 zinc finger, DHHC domain containing 8 [Homo sapiens]
Length = 765
Score = 33.1 bits (74), Expect = 0.47
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 103 SPRVKKNSVHEQEAINSDPELSNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFG 162
+PR +S+ +A ++ P ++ + L PP +P SP +
Sbjct: 638 APRTSSSSLQADQASSNAPGPRPSSGSHRSPARQGLPSPP--------GTPHSPSYAGPK 689
Query: 163 LERYIVSQVLPNPPQAVNNYKEEPVIVTPPTK 194
+I + LP PP ++ ++ P + TPP+K
Sbjct: 690 AVAFIHTD-LPEPPPSLTVQRDHPQLKTPPSK 720
>gi|55769585 HEF-like protein [Homo sapiens]
Length = 786
Score = 32.7 bits (73), Expect = 0.62
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 137 DLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQV--LPNPPQAVNNYKEEPVIVTPPTK 194
+ DPP ++ I EK+ P+ + L R + + + LP+ V PV++ P K
Sbjct: 132 EFPDPPTSARIICEKTLSFPKQAILTLPRPVRASLPTLPSQVYDVPTQHRGPVVLKEPEK 191
Query: 195 QSLVKVLKTPKCA 207
Q L + +PK A
Sbjct: 192 QQLYDIPASPKKA 204
>gi|221316754 exophilin 5 isoform c [Homo sapiens]
Length = 1801
Score = 32.0 bits (71), Expect = 1.1
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 11/54 (20%)
Query: 134 VKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVNNYKEEPV 187
+KDDL +PP S +S SP S Q+ + GL +P + +N Y+++PV
Sbjct: 1734 LKDDLRNPPNPSESLSSNSP-SSQVPEDGL----------SPSEPLNIYEDDPV 1776
>gi|221316751 exophilin 5 isoform b [Homo sapiens]
Length = 1913
Score = 32.0 bits (71), Expect = 1.1
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 11/54 (20%)
Query: 134 VKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVNNYKEEPV 187
+KDDL +PP S +S SP S Q+ + GL +P + +N Y+++PV
Sbjct: 1846 LKDDLRNPPNPSESLSSNSP-SSQVPEDGL----------SPSEPLNIYEDDPV 1888
>gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]
Length = 434
Score = 32.0 bits (71), Expect = 1.1
Identities = 36/184 (19%), Positives = 77/184 (41%), Gaps = 22/184 (11%)
Query: 215 CVTPKLEHFGISEYTMCLNEDYTMGLKNARNNKSEEAIDTESRLNDNVFATPSPIIQQLE 274
C P HF EY++ L N + ++ + N+ AT +++Q
Sbjct: 214 CCPPDGPHFESYEYSLAPPRGVECRLLEEENAMLRKRVEELKKQVSNLLATNEVLLEQ-- 271
Query: 275 KSDAEYTNSPLVPTFCTPGLKIPSTKNSIA-----LVSTNYPLSKTNSSSNDLEVEDRTS 329
+A++ N V T + P+T+ ++A + + N+ +++T+++ + ++ R
Sbjct: 272 --NAQFRNQAKVITLSSTA---PATEQTLAPTVGTVATFNHGIAQTHTTLSSQALQPRP- 325
Query: 330 LVLNSDTCFENLTDPSSPTISSYENLLRTPTPPEVTKIPEDILQLLSKYNSNLATPIAIK 389
++ P++P ++ P PP +T PE ++ ++ LA IA
Sbjct: 326 --VSQQELVAPAGAPAAPPTNAAPPAAPPPPPPHLT--PE-----ITPLSAALAQTIAQG 376
Query: 390 AVPP 393
PP
Sbjct: 377 MAPP 380
>gi|221316747 exophilin 5 isoform a [Homo sapiens]
Length = 1989
Score = 32.0 bits (71), Expect = 1.1
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 11/54 (20%)
Query: 134 VKDDLSDPPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVNNYKEEPV 187
+KDDL +PP S +S SP S Q+ + GL +P + +N Y+++PV
Sbjct: 1922 LKDDLRNPPNPSESLSSNSP-SSQVPEDGL----------SPSEPLNIYEDDPV 1964
>gi|186910286 ribonuclease H2, subunit B isoform 1 [Homo sapiens]
Length = 312
Score = 31.2 bits (69), Expect = 1.8
Identities = 39/143 (27%), Positives = 59/143 (41%), Gaps = 17/143 (11%)
Query: 106 VKKNSVHEQEAINSDPELSNCENFQKTDVKDDLSDPPVASSCISEKSPRSPQLSDFGLER 165
+K N+V+ + S S + TD ++D A IS+ P+ +LSD L +
Sbjct: 178 LKTNNVNVSSRVQSTAFFSGDQ--ASTDKEEDYIR--YAHGLISDYIPK--ELSD-DLSK 230
Query: 166 YIV----SQVLPNPPQAVNNYKEEPVIVTPPTKQSLVKVLKTPKCALKMDDFECVTPKLE 221
Y+ S LPNPP +EPV + K LKT K KM + K++
Sbjct: 231 YLKLPEPSASLPNPPSKKIKLSDEPVEAKEDYTKFNTKDLKTEKKNSKMTAAQKALAKVD 290
Query: 222 HFGISEYTMCLNEDYTMGLKNAR 244
G+ D G+KN +
Sbjct: 291 KSGMKSI------DTFFGVKNKK 307
>gi|34304381 inversin isoform a [Homo sapiens]
Length = 1065
Score = 31.2 bits (69), Expect = 1.8
Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 20/142 (14%)
Query: 286 VPTFCTPGLKIPSTKNSIALVSTNYPLSKTNSSSNDLEVEDRTSLVL----NSDTCFENL 341
+P K PS +++ + P T S N + E RT L + T + L
Sbjct: 184 IPLHWAANHKDPSAVHTVRCILDAAP---TESLLNWQDYEGRTPLHFAVADGNVTVVDVL 240
Query: 342 TDPSSPTISSYENLLRTPTPPEVTKIPEDILQLLSKYN--------SNLATPIAIKA--- 390
T S I+SY+NL RTP I+ LL + N S ATP+ A
Sbjct: 241 TSYESCNITSYDNLFRTPLHWAALLGHAQIVHLLLERNKSGTIPSDSQGATPLHYAAQSN 300
Query: 391 -VPPSKRFLKHGQNIRDVSNKE 411
K FLKH +++D S+ E
Sbjct: 301 FAETVKVFLKH-PSVKDDSDLE 321
>gi|34304379 inversin isoform b [Homo sapiens]
Length = 895
Score = 31.2 bits (69), Expect = 1.8
Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 20/142 (14%)
Query: 286 VPTFCTPGLKIPSTKNSIALVSTNYPLSKTNSSSNDLEVEDRTSLVL----NSDTCFENL 341
+P K PS +++ + P T S N + E RT L + T + L
Sbjct: 184 IPLHWAANHKDPSAVHTVRCILDAAP---TESLLNWQDYEGRTPLHFAVADGNVTVVDVL 240
Query: 342 TDPSSPTISSYENLLRTPTPPEVTKIPEDILQLLSKYN--------SNLATPIAIKA--- 390
T S I+SY+NL RTP I+ LL + N S ATP+ A
Sbjct: 241 TSYESCNITSYDNLFRTPLHWAALLGHAQIVHLLLERNKSGTIPSDSQGATPLHYAAQSN 300
Query: 391 -VPPSKRFLKHGQNIRDVSNKE 411
K FLKH +++D S+ E
Sbjct: 301 FAETVKVFLKH-PSVKDDSDLE 321
>gi|52145305 patched 2 [Homo sapiens]
Length = 1203
Score = 30.8 bits (68), Expect = 2.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 167 IVSQVLPNPPQAVNNYKEEPVIVTPPTKQ 195
++ +L PP+ + YKE P I++PP Q
Sbjct: 1109 VLLSILGPPPEVIQMYKESPEILSPPAPQ 1137
>gi|115527120 nebulin [Homo sapiens]
Length = 6669
Score = 30.8 bits (68), Expect = 2.3
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 353 ENL---LRTPTPPEVTKIP---EDILQLLSKYNSNLATPIAIKAVPPSKRFLKHGQ-NIR 405
ENL + TP PE+ ++ E+ +L K N TP+A V P +KH Q NI
Sbjct: 6249 ENLGKGIPTPITPEMERVKRNQENFSSVLYKENMGKGTPLA---VTPEMERVKHNQENIS 6305
Query: 406 DVSNKEN 412
V KEN
Sbjct: 6306 SVLYKEN 6312
>gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens]
Length = 712
Score = 30.8 bits (68), Expect = 2.3
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 23/107 (21%)
Query: 279 EYTNSPLVPTFCTPGL-KIPSTKNSIAL--------VSTNYPLSKTNSSS---------- 319
E + P +P+ PGL ++ S L STNYP+ T S+
Sbjct: 260 EIASPPELPSSPPPGLPEVAPDATSTGLPDTPAAPETSTNYPVECTEGSAGPQSLPLPIL 319
Query: 320 ----NDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPTPP 362
N V+D+T L L+ + T P PT ++ E P PP
Sbjct: 320 EPVKNPCSVKDQTPLQLSVEDTTSPNTKPCPPTPTTPETSPPPPPPP 366
>gi|16554449 zonadhesin isoform 3 [Homo sapiens]
Length = 2812
Score = 30.8 bits (68), Expect = 2.3
Identities = 56/254 (22%), Positives = 88/254 (34%), Gaps = 34/254 (13%)
Query: 130 QKTDVKDDLSDPPVASSCISEKSPRSP-QLSDFGLERYIVSQVLPNPPQAVNNYKEEPVI 188
+K + + P S IS + P +P + E+ +S P P E +
Sbjct: 715 EKPTIPTEKPTIPTEKSTISPEKPTTPTEKPTIPTEKPTISPEKPTTPTEKPTISPEKLT 774
Query: 189 VTP--PTKQSLVKVLKTPKCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGLKNARNN 246
+ PT + + T K + + E TP E +E E T+ + +
Sbjct: 775 IPTEKPTIPTEKPTIPTEKPTISTE--EPTTPTEETTISTEKPSIPMEKPTLPTEETTTS 832
Query: 247 KSEEAIDTESR---LNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTKNSI 303
E I TE + +T P I EK PT L IP+ K +I
Sbjct: 833 VEETTISTEKLTIPMEKPTISTEKPTIPT-EK-----------PTISPEKLTIPTEKLTI 880
Query: 304 ALVSTNYPLSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRT--PT- 360
P+ +T S+ L + + P PTIS+ + + T PT
Sbjct: 881 PTEKPTIPIEETTISTEKLTIPTEKPTI-----------SPEKPTISTEKPTIPTEKPTI 929
Query: 361 PPEVTKIPEDILQL 374
P E T I + L +
Sbjct: 930 PTEETTISTEKLTI 943
>gi|27881494 zonadhesin isoform 6 [Homo sapiens]
Length = 2721
Score = 30.8 bits (68), Expect = 2.3
Identities = 56/254 (22%), Positives = 88/254 (34%), Gaps = 34/254 (13%)
Query: 130 QKTDVKDDLSDPPVASSCISEKSPRSP-QLSDFGLERYIVSQVLPNPPQAVNNYKEEPVI 188
+K + + P S IS + P +P + E+ +S P P E +
Sbjct: 715 EKPTIPTEKPTIPTEKSTISPEKPTTPTEKPTIPTEKPTISPEKPTTPTEKPTISPEKLT 774
Query: 189 VTP--PTKQSLVKVLKTPKCALKMDDFECVTPKLEHFGISEYTMCLNEDYTMGLKNARNN 246
+ PT + + T K + + E TP E +E E T+ + +
Sbjct: 775 IPTEKPTIPTEKPTIPTEKPTISTE--EPTTPTEETTISTEKPSIPMEKPTLPTEETTTS 832
Query: 247 KSEEAIDTESR---LNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTKNSI 303
E I TE + +T P I EK PT L IP+ K +I
Sbjct: 833 VEETTISTEKLTIPMEKPTISTEKPTIPT-EK-----------PTISPEKLTIPTEKLTI 880
Query: 304 ALVSTNYPLSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRT--PT- 360
P+ +T S+ L + + P PTIS+ + + T PT
Sbjct: 881 PTEKPTIPIEETTISTEKLTIPTEKPTI-----------SPEKPTISTEKPTIPTEKPTI 929
Query: 361 PPEVTKIPEDILQL 374
P E T I + L +
Sbjct: 930 PTEETTISTEKLTI 943
>gi|125656165 THO complex 2 [Homo sapiens]
Length = 1593
Score = 30.4 bits (67), Expect = 3.1
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 74 DFIKATKVLMEKNSMDIMKIREYFQK-YGYSPRVKKNSVHEQEAINSDPELSNCENFQKT 132
+F+ ++L E S D R++ Q Y S V K ++ ++A N ++S +
Sbjct: 23 EFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASNVLSDISEFREDMPS 82
Query: 133 DVKDDLSDPPVASSCISEKSPR 154
+ D + ++C+ EKS R
Sbjct: 83 ILADVFCILDIETNCLEEKSKR 104
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 30.4 bits (67), Expect = 3.1
Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 265 TPSPIIQQLEKSDAEYTNSP-----LVPTFCTPGLKIPSTKNSIALVSTNYPLSKTNSSS 319
T +P + S A T+ P VPT T + P+T SI T S SS+
Sbjct: 1912 TSAPTTRTTSASPASTTSGPGNTPSPVPTTST--ISAPTT--SITSAPTTSTTSAPTSST 1967
Query: 320 NDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPTPPEVT 365
TS +S T + S+PT S+ TP+P T
Sbjct: 1968 TSAPTTSTTSAPTSSTTSSPQTSTTSAPTTSTTSGPGTTPSPVPTT 2013
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 30.4 bits (67), Expect = 3.1
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 20/128 (15%)
Query: 241 KNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTK 300
+N R + S+E E +L N +TPS Q K + T L+P + P
Sbjct: 1072 ENRRGSLSQEMAKGEEKLAANTLSTPSGSSLQRPKKSGDMT---LIPE------QEPMEI 1122
Query: 301 NSIALVSTNYPLSKTNSSSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPT 360
+S V + +SKT + N+ +D S EN+ +S T+ E LRT T
Sbjct: 1123 DSEPGVENVFEVSKTQDNRNNNSQQDIDS---------ENMKQKTSATVQKDE--LRTCT 1171
Query: 361 PPEVTKIP 368
P
Sbjct: 1172 ADSKATAP 1179
>gi|46519147 ankyrin repeat and KH domain containing 1 isoform 1
[Homo sapiens]
Length = 2542
Score = 30.4 bits (67), Expect = 3.1
Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 222 HFGISEYTMCLNEDYTMGLKNARNNKSEEA----IDTESRLND---NVFATPSPIIQQLE 274
H + E + D T LK+ E A + S L D NV + P+ + QL
Sbjct: 647 HLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDYPNNVLSVPTTDVSQLP 706
Query: 275 KSDAEYTNSPLVPTFCTPGLKIP-------STKNSIALVSTNYPLSKTNSSSNDLEVEDR 327
+ + P VPT T + +P S +NS AL+ SK SSS L+V D+
Sbjct: 707 PPSQDQSQVPRVPTH-TLAMVVPPQEPDRTSQENSPALLGVQKGTSKQKSSS--LQVADQ 763
Query: 328 TSL 330
L
Sbjct: 764 DLL 766
>gi|37620163 ANKHD1-EIF4EBP3 protein [Homo sapiens]
Length = 2617
Score = 30.4 bits (67), Expect = 3.1
Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 222 HFGISEYTMCLNEDYTMGLKNARNNKSEEA----IDTESRLND---NVFATPSPIIQQLE 274
H + E + D T LK+ E A + S L D NV + P+ + QL
Sbjct: 647 HLAVVELLLAHGADPTHRLKDGSTMLIEAAKGGHTNVVSYLLDYPNNVLSVPTTDVSQLP 706
Query: 275 KSDAEYTNSPLVPTFCTPGLKIP-------STKNSIALVSTNYPLSKTNSSSNDLEVEDR 327
+ + P VPT T + +P S +NS AL+ SK SSS L+V D+
Sbjct: 707 PPSQDQSQVPRVPTH-TLAMVVPPQEPDRTSQENSPALLGVQKGTSKQKSSS--LQVADQ 763
Query: 328 TSL 330
L
Sbjct: 764 DLL 766
>gi|46409304 glutamate-rich 1 [Homo sapiens]
Length = 443
Score = 30.4 bits (67), Expect = 3.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 30 DGEESDFEDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGI 73
D E+ D D P R H + K+ N+L+++A LE Q+ +
Sbjct: 99 DTEDQDPHDQPKRRRIRKHKSKKKFKNPNNVLIEQAELEKQQSL 142
>gi|35038601 spindle assembly abnormal protein 6 [Homo sapiens]
Length = 657
Score = 30.4 bits (67), Expect = 3.1
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 27/132 (20%)
Query: 51 VQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQKYGYSPRVKKNS 110
++ L+ D+ L+ K +L+N I + K+L EK + K ++ Q G S R+K+
Sbjct: 387 IKKLQGDLKTLMGKLKLKNTVTI---QQEKLLAEKEEK-LQKEQKELQDVGQSLRIKEQE 442
Query: 111 VHE-QEAINS----------------------DPELSNCENFQKTDVKDDLSDPPVASSC 147
V + QE + + + EL+ + +K DV + PP SS
Sbjct: 443 VCKLQEQLEATVKKLEESKQLLKNNEKLITWLNKELNENQLVRKQDVLGPSTTPPAHSSS 502
Query: 148 ISEKSPRSPQLS 159
+ +S SP L+
Sbjct: 503 NTIRSGISPNLN 514
>gi|239745501 PREDICTED: similar to acyl-CoA synthetase medium-chain
family member 2 [Homo sapiens]
Length = 1122
Score = 30.0 bits (66), Expect = 4.0
Identities = 53/231 (22%), Positives = 80/231 (34%), Gaps = 39/231 (16%)
Query: 141 PPVASSCISEKSPRSPQLSDFGLERYIVSQVLPNPPQAVNNYKEEPVIVTPPTKQSLVKV 200
PP CI++ S L+ + + P PP A +N K P + P S
Sbjct: 249 PPTQQHCITDNS--------LSLKTPLECLLTPLPPSADDNLKTPPECLLTPLPPSADDN 300
Query: 201 LKT-PKCALK--MDDFECVTPKLEHFGISEYTMCLNEDYTMGLKNARNNKSEEAIDTESR 257
LKT P+C L P + CL + SE +
Sbjct: 301 LKTPPECLLTPLPPSAPPSAPPSADDNLKTRAECLLHPLPPSADDNLKTPSERQLTP--- 357
Query: 258 LNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGLKIPSTKNSIALVSTNYPLSKTNS 317
+ + P K+ AE PL P+ LK PS + L + P
Sbjct: 358 ----LPPSAPPSADDNIKTTAERLRGPLPPS-ADDNLKTPSERQLTPLPPSAPP------ 406
Query: 318 SSNDLEVEDRTSLVLNSDTCFENLTDPSSPTISSYENLLRTPTPPEVTKIP 368
S++D N T E+L P P S ++ L+TP+ ++T +P
Sbjct: 407 SADD-----------NIKTPAEHLRGPLPP---SADDNLKTPSERQLTPLP 443
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,704,845
Number of Sequences: 37866
Number of extensions: 786952
Number of successful extensions: 2213
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 2176
Number of HSP's gapped (non-prelim): 85
length of query: 412
length of database: 18,247,518
effective HSP length: 105
effective length of query: 307
effective length of database: 14,271,588
effective search space: 4381377516
effective search space used: 4381377516
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.