Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EXPH5 Sequence: fasta or formatted (1989aa) NCBI GI: 221316747
Description:

exophilin 5 isoform a

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [1913aa] exophilin 5 isoform b
alt prot [1801aa] exophilin 5 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         86           2
 C cysteine            1.2         24           1
 D aspartate           4.9         97           2
 E glutamate           7.7        153           3
 F phenylalanine       4.3         86           2
 G glycine             4.7         94           1
 H histidine           2.7         54           2
 I isoleucine          3.2         64           2
 K lysine              6.6        131           2
 L leucine             6.8        136           2
 M methionine          1.8         35           1
 N asparagine          6.1        121           2
 P proline             7.1        141           3
 Q glutamine           4.9         98           3
 R arginine            6.1        122           2
 S serine             14.6        291           3
 T threonine           6.2        123           3
 V valine              4.2         84           2
 W tryptophan          0.8         15           1
 Y tyrosine            1.7         34           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   exophilin 5 isoform a 
EXPH5                 0.962   exophilin 5 isoform b 
EXPH5                 0.906   exophilin 5 isoform c 
SYTL2                 0.007   synaptotagmin-like 2 isoform a 
SYTL2                 0.007   synaptotagmin-like 2 isoform i 
SYTL2                 0.007   synaptotagmin-like 2 isoform g 
DSPP                  0.007   dentin sialophosphoprotein preproprotein 
SYTL1                 0.006   synaptotagmin-like 1 
GON4L                 0.006   gon-4-like isoform a 
NOLC1                 0.005   nucleolar and coiled-body phosphoprotein 1 
LOC100294236          0.005   PREDICTED: similar to diffuse panbronchiolitis crit...
ATRX                  0.005   transcriptional regulator ATRX isoform 2 
ATRX                  0.005   transcriptional regulator ATRX isoform 1 
MUC12                 0.005   PREDICTED: mucin 12, cell surface associated 
SRRM2                 0.005   splicing coactivator subunit SRm300 
MLL                   0.005   myeloid/lymphoid or mixed-lineage leukemia protein [...
MUC16                 0.005   mucin 16 
MUC3B                 0.005   PREDICTED: mucin 3B, cell surface associated, parti...
MUC3A                 0.004   PREDICTED: mucin 3A, intestinal 
TRAF3IP1              0.004   TNF receptor-associated factor 3 interacting protein...
MUC12                 0.004   PREDICTED: mucin 12 
NAV2                  0.004   neuron navigator 2 isoform 1 
ATMIN                 0.004   ATM interactor 
DPCR1                 0.004   diffuse panbronchiolitis critical region 1 protein ...
DOCK1                 0.004   dedicator of cytokinesis 1 
LOC100134138          0.004   PREDICTED: similar to mucin, partial 
NIPBL                 0.004   delangin isoform B 
NIPBL                 0.004   delangin isoform A 
SYTL4                 0.004   synaptotagmin-like 4 
SYTL4                 0.004   synaptotagmin-like 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press