Guide to the Human Genome
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Name: ERICH1 Sequence: fasta or formatted (443aa) NCBI GI: 46409304
Description:

glutamate-rich 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         42           2
 C cysteine            0.9          4           1
 D aspartate           9.3         41           2
 E glutamate          13.1         58           3
 F phenylalanine       2.0          9           2
 G glycine             6.1         27           1
 H histidine           2.9         13           1
 I isoleucine          2.5         11           1
 K lysine              7.9         35           3
 L leucine             6.5         29           4
 M methionine          1.6          7           1
 N asparagine          2.0          9           2
 P proline             6.1         27           2
 Q glutamine           4.3         19           2
 R arginine            5.0         22           3
 S serine              7.9         35           2
 T threonine           6.1         27           2
 V valine              4.1         18           1
 W tryptophan          0.7          3           1
 Y tyrosine            1.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glutamate-rich 1 
RPGR                  0.055   retinitis pigmentosa GTPase regulator isoform C [Hom...
EIF5B                 0.050   eukaryotic translation initiation factor 5B 
RBM12B                0.043   RNA binding motif protein 12B 
NSBP1                 0.040   nucleosomal binding protein 1 
LEO1                  0.037   Leo1, Paf1/RNA polymerase II complex component, homo...
HTATSF1               0.033   HIV-1 Tat specific factor 1 
HTATSF1               0.033   HIV-1 Tat specific factor 1 
RP1L1                 0.033   retinitis pigmentosa 1-like 1 
UBTF                  0.032   upstream binding transcription factor, RNA polymera...
UBTF                  0.032   upstream binding transcription factor, RNA polymera...
UBTF                  0.032   upstream binding transcription factor, RNA polymerase...
LOC100132713          0.032   PREDICTED: similar to hCG1654128 
GTF2F1                0.032   general transcription factor IIF, polypeptide 1, 74...
NCL                   0.030   nucleolin 
RCSD1                 0.030   RCSD domain containing 1 
CENPB                 0.030   centromere protein B 
LOC100132713          0.030   PREDICTED: similar to hCG1654128 
TCHH                  0.030   trichohyalin 
NEFH                  0.030   neurofilament, heavy polypeptide 200kDa 
RNF20                 0.029   ring finger protein 20 
MYST3                 0.028   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.028   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.028   MYST histone acetyltransferase (monocytic leukemia)...
MACROD2               0.028   MACRO domain containing 2 isoform 1 
MACROD2               0.028   MACRO domain containing 2 isoform 2 
ANP32B                0.028   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
CTR9                  0.028   SH2 domain binding protein 1 
HIRIP3                0.028   HIRA interacting protein 3 
LOC100132713          0.026   PREDICTED: similar to hCG1654128 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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