Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC4A10 Sequence: fasta or formatted (1088aa) NCBI GI: 155722998
Description:

solute carrier family 4, sodium bicarbonate transporter-like, member 10

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         62           2
 C cysteine            1.8         20           1
 D aspartate           5.4         59           3
 E glutamate           7.3         79           3
 F phenylalanine       5.2         57           2
 G glycine             6.2         68           2
 H histidine           3.2         35           3
 I isoleucine          6.8         74           2
 K lysine              5.5         60           4
 L leucine            11.1        121           2
 M methionine          2.8         30           2
 N asparagine          2.6         28           1
 P proline             5.4         59           2
 Q glutamine           3.0         33           2
 R arginine            5.1         56           2
 S serine              7.6         83           2
 T threonine           4.9         53           1
 V valine              6.6         72           2
 W tryptophan          1.7         18           2
 Y tyrosine            1.9         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 4, sodium bicarbonate transpo... 
SLC4A8                0.770   solute carrier family 4, sodium bicarbonate cotransp...
SLC4A8                0.756   solute carrier family 4, sodium bicarbonate cotransp...
SLC4A7                0.572   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A4                0.494   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A4                0.494   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A4                0.472   solute carrier family 4, sodium bicarbonate cotranspo...
SLC4A5                0.442   sodium bicarbonate transporter 4 isoform c 
SLC4A5                0.437   sodium bicarbonate transporter 4 isoform a 
SLC4A9                0.358   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A2                0.298   solute carrier family 4, anion exchanger, member 2 ...
SLC4A3                0.291   solute carrier family 4, anion exchanger, member 3 ...
SLC4A3                0.291   solute carrier family 4, anion exchanger, member 3 ...
SLC4A1                0.248   solute carrier family 4, anion exchanger, member 1 [H...
SLC4A11               0.092   solute carrier family 4 member 11 
HRC                   0.006   histidine rich calcium binding protein precursor [Hom...
ANP32B                0.005   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
PLEKHF2               0.004   phafin 2 
TNKS                  0.003   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
WDR59                 0.003   WD repeat domain 59 
RNASEN                0.003   ribonuclease III, nuclear isoform 2 
WDR66                 0.003   WD repeat domain 66 
LOC100292916          0.003   PREDICTED: hypothetical protein 
LOC100290781          0.003   PREDICTED: hypothetical protein XP_002347101 
LOC100286938          0.003   PREDICTED: hypothetical protein XP_002342984 
C16orf71              0.003   hypothetical protein LOC146562 
LRRFIP2               0.003   leucine rich repeat (in FLII) interacting protein 2 i...
AKAP6                 0.003   A-kinase anchor protein 6 
ZNF385C               0.002   PREDICTED: zinc finger protein 385C 
ZNF385C               0.002   PREDICTED: zinc finger protein 385C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press