Guide to the Human Genome
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Name: SLC4A4 Sequence: fasta or formatted (1035aa) NCBI GI: 4507025
Description:

solute carrier family 4, sodium bicarbonate cotransporter, member 4 isoform 2

Referenced in:

Kidney
Solute Carrier Families

Other entries for this name:
alt prot [1079aa] solute carrier family 4, sodium bicarbonate cotransporter, member...
alt prot [1094aa] solute carrier family 4, sodium bicarbonate cotransporter, member...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         66           3
 C cysteine            1.4         15           1
 D aspartate           6.1         63           2
 E glutamate           5.3         55           2
 F phenylalanine       6.6         68           2
 G glycine             5.8         60           4
 H histidine           2.1         22           1
 I isoleucine          6.5         67           2
 K lysine              6.8         70           7
 L leucine            11.4        118           3
 M methionine          3.1         32           1
 N asparagine          3.3         34           2
 P proline             5.9         61           2
 Q glutamine           2.5         26           2
 R arginine            4.0         41           2
 S serine              7.5         78           3
 T threonine           5.7         59           2
 V valine              6.1         63           2
 W tryptophan          1.3         13           2
 Y tyrosine            2.3         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 4, sodium bicarbonate cotranspo... 
SLC4A4                0.963   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A4                0.917   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A5                0.624   sodium bicarbonate transporter 4 isoform c 
SLC4A5                0.619   sodium bicarbonate transporter 4 isoform a 
SLC4A8                0.500   solute carrier family 4, sodium bicarbonate cotransp...
SLC4A8                0.500   solute carrier family 4, sodium bicarbonate cotransp...
SLC4A10               0.500   solute carrier family 4, sodium bicarbonate transpo...
SLC4A9                0.447   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A7                0.431   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A2                0.308   solute carrier family 4, anion exchanger, member 2 ...
SLC4A3                0.303   solute carrier family 4, anion exchanger, member 3 ...
SLC4A3                0.303   solute carrier family 4, anion exchanger, member 3 ...
SLC4A1                0.263   solute carrier family 4, anion exchanger, member 1 [H...
SLC4A11               0.100   solute carrier family 4 member 11 
LOC645685             0.005   PREDICTED: hypothetical protein 
LOC645685             0.005   PREDICTED: hypothetical protein 
LOC645685             0.005   PREDICTED: hypothetical protein 
CHD5                  0.005   chromodomain helicase DNA binding protein 5 
AP3D1                 0.005   adaptor-related protein complex 3, delta 1 subunit ...
AP3D1                 0.005   adaptor-related protein complex 3, delta 1 subunit ...
KTN1                  0.004   kinectin 1 isoform b 
KTN1                  0.004   kinectin 1 isoform a 
KTN1                  0.004   kinectin 1 isoform c 
KTN1                  0.004   kinectin 1 isoform a 
SP7                   0.004   osterix 
RP9                   0.004   retinitis pigmentosa 9 
ZC3H13                0.004   zinc finger CCCH-type containing 13 
SLU7                  0.004   step II splicing factor SLU7 
NKAPL                 0.004   NFKB activating protein-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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